Carg04356 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04356
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase MARCH8
Location	Cucurbita_argyrosperma_scaffold_044 : 1582730 .. 1586343 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACAATCTGTGGAATCGTCATCCCCGGCTGAGATTATTGTCATAGGGAGAGAGAGCTCCGTTACGGATGATGATTTACACAATCTTAACGTTGATGAAACTTGTCACCTGTTGAACGCAGACCTACCGCAATGTCGGATATGCCTTGACACCGGAGGTTTTTATCATTCTTTTTTTGTTCAATATGCAATGCAATTTCATCAACATCAGTTAAGACAGTGTTTGTCACATTTTTTTTTTAACAAATAAAAATATTGTCTTCAATGAGTTAAGATTGTCACTACATATTTTGTTTTTCTTTTCTTCTGAAGCTTCCATCTCCTGAATTTTCTTTCAGGAGAAGATTTAATCGCTCCATGCCACTGCAAAGGCACTCAGAAGTATGTCCATAGATTATGTCTTGGTAATTGGAGGTCCACAAAGGTCAGTTTTCCTTGCCTCTCTATTCTTAATTGTCATTCCCTTCGCCGCTAGCAGATAGCAGATATTGTCGATTATACCCCGTGATATATCATCGTCAGTCTCACGATTTTAAAATACGCCTACTAGGGAGTTCTACTCTCTTATTAGGAATGCTTCGTTTCCCTTTTCAACCAATGTAGGATCTCACGATCCACCACCCCTTGGGAACCCAGCGTCCTTATGGCACACTGCCTGGTAACTGACCCTAATACCATTTGTAACAACTCAAACCCACTGCTATCAAATATTGTCTGTTTTGGTCCATTACGTATCGCGTCAGCCTCACAATTTTAAAATGTGTCTACTAGGGAGAGGTTTCCAAAATGTGTCTACTAGGGAGAGGTTTCCACGTCCTTATAAGGAATGCTTCGTTTCCCTCTTCAACCAATGTGAGATCTCATAGTTGGTTAGAACCTGCATCGGTTGAAGAGAGAAACGAAATATTTCTTATAAGGGTGTGAAAACATCTCCGTTTTAAAATCGTGAGGCTGACGGCGATACATAACCGGCCAAAGCAAACAATATCTACTAATAGTGGGCTTGGGCGGTTACAAATAGTATTGGAATGGCTCAAAAGATGTGCCAACAAAGACGTTGGACCTCCCAGAAGAGTGGATTGTGAGATTTAACATTGGTTGAAAAGGAGAACAAGTCAGTGAAAACCTCCTCTAATAGGAGTGTTTTTAAAACTGTGAGGCTGATAGCAATACATAACATATCAAAGCAGACAATATCTACGTATATCGTAAAATTTTTGAACTTTCCGATTACCAATCTAATCCATCAGCTTTCATAGACGTTCCAAACAAGTGGGTGTTCGATAATGAAGTTTTCAAGGTTTTTGTCTTCTAATCCATGTCAGTAATTCTGTCAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCATGATACGTGCAAATGTCCCTACTGATCGCTGGTGGTTAAGACTGAAGTTTCAGTTTCTCGTTGCTAGAGACCATGCGTTCATTTTCATCATTGTTCAGCTGGTAGATTCTTCTAATTATATTTTCAACTACTCTGGGTTCATTCACTTTTAAGTCAAGGAGTTTGATTCGAGTTTGGCTAAATTTTCTTCCTCATTATTATCATATAAACCCATTTCATTGTTATGATTGATTTTTCTAGAGAGATCTTCACCATGTGCTTTAAACAGATCGTGGCATTCTTGGGTGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTACGCCATGGCTGGTATACTGAGGCTGCCGATTAACTCCTTACTTTTTAGTCTTTCTTATATATGTATTGTATTTATTAAAGTGAATATTCTCCCACAGTTTTTTGGTTTCTTTTGATAAGAAGAACCTAGAACTTGCTGTTGATGAATCCTTGAATGAAATCAAGCACACCGGCTTAAGAAAATGTAGTTGCTATACTATCCGACTTTTAAATGCTTCGTCTATAATTTCCTTCTGCAGTCTTGGCTATCATCTTGGTTGGATTACTCTATGGATTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGTTCAGTAATGATTTAAGATCAGAATATTGTAAAATTGTCCTCCCCCGTTAAGAGTTTTATGTCAAAGTTGAGCTTACAGCGGTTAGCACGTATTGTAATGTCCCACATTGGTTGGGGAGGAGAACAAATCATCCTTTATAAGGGTGTGAAAACTTTCCCCTTCCAGACGCGTTTTAAAGCCTTGAGGGGAAACCCGAAAGGAAAAACCCAAAAAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACAAATGATAGCAGAGTCAGTCACCGGACGATGTGTCGGCCTTCTCGCTGTTCCCCGAAGGGGGTAGACATGAGGCTGTGTGCCAGTAAGGACGCTGGACCCCAAAGGGGGTGGATTTGGGGGCGATCCCACATCGATTAGATAAAGGAACGAGTGCCAGCGAGGACACTGGGCCCCGAAGGGGGGTGGATTGTAATGTCCCACATTGGTTGGGGAGGAGAACAAATCACCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCCTTTTAAAGTCTTAAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTAGATCTGGGTCGTTACACGTATTCCACCTGAGATTGAGATTGATGGTTCAAATGTCCCCTCTCCTATTCTTTGTACTAAAAGAAAAACTTTATACATTTCAGGAGTATATAGTCGAAGATCGAGAACATAACAAAAGTGTTCCTGAACTAGACCCCAGACATGTTATGGAGCTAAGGATGTTAGGCCTGTATTAATCTGGAACTTCGTGAACTCTACTTGATGTAAGGAACTCTGTAGTGTATAAATTCCTCATCTTTTTATATCTCACTGGAGAATTAGCATTTGGGTAATGTTGTCTGGCCATAATATTTGTTTTGTAACTTCAGAATTCAATTTACAATTATACAGAAAGAATCCTGGAGGTTTTACAGTTTTTTGACCCCGTAATCTTCACAGGTTTTGATTGATCTGGCGGGTAGATCAAACAAAGCAAATTGTTTATAAAATTTCGCGAGATACCTAGCAAGAAGAGTCTGTTCCTTCCTCGTTTACTATAGCGGTCTGTTTGAACAAATAAGGAGTCGCTTCTTGGTTGGGCACACAGATTTCCTGGTGTAAATGGGCATTCTACGTGATGACAAGGAAATTGCTTCCCGTGCCGCCAGGCTCCCACTTACCCCTGAAGGCCATTTCACATATCCTTTTGGATTTGTATTTCTTTGTGAACGATTCAAATTAGTAAATTAAACTGTAATTTATCTGTTAGCGATTGAGTTATCCAAGATGCTTCAAGGTTAAGACAGCTATGCGTCCATACTCCTATTAATGTGTGTGATCCTTACCTCTTGGGTTCTTTTAGTCAGTCTAGATATTACATAGTTCTTGTCTTTCAGCATTCGTATATGAAGATGTTTCACAAGGAAGGAAAGAGGTCGGTTTGGCTTTTGCGGAGAAAGAGGGAGAGAATTGGAGATTAGAAGCTAATCCTTCAATTTCATAG

mRNA sequence

CCACAATCTGTGGAATCGTCATCCCCGGCTGAGATTATTGTCATAGGGAGAGAGAGCTCCGTTACGGATGATGATTTACACAATCTTAACGTTGATGAAACTTGTCACCTGTTGAACGCAGACCTACCGCAATGTCGGATATGCCTTGACACCGGAGGAGAAGATTTAATCGCTCCATGCCACTGCAAAGGCACTCAGAAGTATGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCATGATACGTGCAAATGTCCCTACTGATCGCTGGTGGTTAAGACTGAAGTTTCAGTTTCTCGTTGCTAGAGACCATGCGTTCATTTTCATCATTGTTCAGCTGATCGTGGCATTCTTGGGTGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTACGCCATGGCTGTCTTGGCTATCATCTTGGTTGGATTACTCTATGGATTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAGTATATAGTCGAAGATCGAGAACATAACAAAAGTGTTCCTGAACTAGACCCCAGACATGTTATGGAGCTAAGGATGTTAGGCCTAAAGAATCCTGGAGCATTCGTATATGAAGATGTTTCACAAGGAAGGAAAGAGGTCGGTTTGGCTTTTGCGGAGAAAGAGGGAGAGAATTGGAGATTAGAAGCTAATCCTTCAATTTCATAG

Coding sequence (CDS)

CCACAATCTGTGGAATCGTCATCCCCGGCTGAGATTATTGTCATAGGGAGAGAGAGCTCCGTTACGGATGATGATTTACACAATCTTAACGTTGATGAAACTTGTCACCTGTTGAACGCAGACCTACCGCAATGTCGGATATGCCTTGACACCGGAGGAGAAGATTTAATCGCTCCATGCCACTGCAAAGGCACTCAGAAGTATGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCATGATACGTGCAAATGTCCCTACTGATCGCTGGTGGTTAAGACTGAAGTTTCAGTTTCTCGTTGCTAGAGACCATGCGTTCATTTTCATCATTGTTCAGCTGATCGTGGCATTCTTGGGTGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTACGCCATGGCTGTCTTGGCTATCATCTTGGTTGGATTACTCTATGGATTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAGTATATAGTCGAAGATCGAGAACATAACAAAAGTGTTCCTGAACTAGACCCCAGACATGTTATGGAGCTAAGGATGTTAGGCCTAAAGAATCCTGGAGCATTCGTATATGAAGATGTTTCACAAGGAAGGAAAGAGGTCGGTTTGGCTTTTGCGGAGAAAGAGGGAGAGAATTGGAGATTAGAAGCTAATCCTTCAATTTCATAG

Protein sequence

PQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLIAPCHCKGTQKYEGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGLKNPGAFVYEDVSQGRKEVGLAFAEKEGENWRLEANPSIS

Homology

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BLAST of Carg04356 vs. NCBI nr
Match: XP_022948731.1 (E3 ubiquitin-protein ligase MARCH8-like isoform X1 [Cucurbita moschata] >XP_022948732.1 E3 ubiquitin-protein ligase MARCH8-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 433.7 bits (1114), Expect = 4.3e-118
Identity = 217/231 (93.94%), Postives = 218/231 (94.37%), Query Frame = 0


Query: 1   PQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLIAPC 60
           PQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHL+NADLPQCRICLDTGGEDLIAPC
Sbjct: 21  PQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLVNADLPQCRICLDTGGEDLIAPC 80

Query: 61  HCKGTQKY-------------EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD 120
           HCKGTQKY             EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD
Sbjct: 81  HCKGTQKYVHRLCLDNWRSTKEGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD 140

Query: 121 HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA 180
           HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA
Sbjct: 141 HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA 200

Query: 181 IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 219
           IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL
Sbjct: 201 IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 251

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BLAST of Carg04356 vs. NCBI nr
Match: XP_022948733.1 (E3 ubiquitin-protein ligase MARCH8-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 433.7 bits (1114), Expect = 4.3e-118
Identity = 217/231 (93.94%), Postives = 218/231 (94.37%), Query Frame = 0


Query: 1   PQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLIAPC 60
           PQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHL+NADLPQCRICLDTGGEDLIAPC
Sbjct: 19  PQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLVNADLPQCRICLDTGGEDLIAPC 78

Query: 61  HCKGTQKY-------------EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD 120
           HCKGTQKY             EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD
Sbjct: 79  HCKGTQKYVHRLCLDNWRSTKEGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD 138

Query: 121 HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA 180
           HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA
Sbjct: 139 HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA 198

Query: 181 IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 219
           IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL
Sbjct: 199 IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 249

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BLAST of Carg04356 vs. NCBI nr
Match: XP_023524617.1 (uncharacterized protein LOC111788515, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431.0 bits (1107), Expect = 2.8e-117
Identity = 216/231 (93.51%), Postives = 217/231 (93.94%), Query Frame = 0


Query: 1   PQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLIAPC 60
           PQSVESSSPAEIIVIGRESSVTDDDLHN NVDETCHL+NADLPQCRICLDTGGEDLIAPC
Sbjct: 69  PQSVESSSPAEIIVIGRESSVTDDDLHNPNVDETCHLVNADLPQCRICLDTGGEDLIAPC 128

Query: 61  HCKGTQKY-------------EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD 120
           HCKGTQKY             EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD
Sbjct: 129 HCKGTQKYVHRLCLDNWRSTKEGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD 188

Query: 121 HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA 180
           HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA
Sbjct: 189 HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA 248

Query: 181 IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 219
           IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL
Sbjct: 249 IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 299

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BLAST of Carg04356 vs. NCBI nr
Match: XP_022998756.1 (E3 ubiquitin-protein ligase MARCH8-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 426.0 bits (1094), Expect = 9.0e-116
Identity = 214/231 (92.64%), Postives = 216/231 (93.51%), Query Frame = 0


Query: 1   PQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLIAPC 60
           PQSVESSSP EIIVIGRESSVT+DDLHNLNVDETCHL+NADL QCRICLDTGGEDLIAPC
Sbjct: 21  PQSVESSSPNEIIVIGRESSVTEDDLHNLNVDETCHLVNADLLQCRICLDTGGEDLIAPC 80

Query: 61  HCKGTQKY-------------EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD 120
           HCKGTQKY             EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD
Sbjct: 81  HCKGTQKYVHRLCLDNWRSTKEGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD 140

Query: 121 HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA 180
           HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA
Sbjct: 141 HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA 200

Query: 181 IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 219
           IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL
Sbjct: 201 IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 251

[Close]

BLAST of Carg04356 vs. NCBI nr
Match: XP_022998757.1 (E3 ubiquitin-protein ligase MARCH8-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 426.0 bits (1094), Expect = 9.0e-116
Identity = 214/231 (92.64%), Postives = 216/231 (93.51%), Query Frame = 0


Query: 1   PQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLIAPC 60
           PQSVESSSP EIIVIGRESSVT+DDLHNLNVDETCHL+NADL QCRICLDTGGEDLIAPC
Sbjct: 19  PQSVESSSPNEIIVIGRESSVTEDDLHNLNVDETCHLVNADLLQCRICLDTGGEDLIAPC 78

Query: 61  HCKGTQKY-------------EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD 120
           HCKGTQKY             EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD
Sbjct: 79  HCKGTQKYVHRLCLDNWRSTKEGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARD 138

Query: 121 HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA 180
           HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA
Sbjct: 139 HAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIA 198

Query: 181 IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 219
           IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL
Sbjct: 199 IICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 249

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BLAST of Carg04356 vs. TAIR10
Match: AT1G50440.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 316.6 bits (810), Expect = 1.4e-86
Identity = 160/220 (72.73%), Postives = 180/220 (81.82%), Query Frame = 0


Query: 12  IIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLIAPCHCKGTQKY--- 71
           ++  G+ S + + D      DET  L++ D PQCRICLD GGEDLIAPC+CKGTQK+   
Sbjct: 36  VVEEGQVSEIAETD-----DDETTLLVSGDQPQCRICLDVGGEDLIAPCNCKGTQKHVHR 95

Query: 72  ----------EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARDHAFIFIIVQLI 131
                     EGFAF+HCTECRA F +RANVP DRWWLRL+FQ LVARDHAFIFI VQ+I
Sbjct: 96  SCLDNWRSTKEGFAFSHCTECRAFFKLRANVPADRWWLRLRFQLLVARDHAFIFISVQMI 155

Query: 132 VAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERH 191
           VAFLG+LVYKFYGEELREMFGYEEHPYGFY +AVLAI+LVGLLYGFFIAIICGQ+INERH
Sbjct: 156 VAFLGLLVYKFYGEELREMFGYEEHPYGFYTLAVLAIVLVGLLYGFFIAIICGQKINERH 215

Query: 192 YHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 219
           YHVLAKQELTKEYIVEDR+  K+VPELD  HVMEL+MLGL
Sbjct: 216 YHVLAKQELTKEYIVEDRD-CKNVPELDQSHVMELKMLGL 249

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BLAST of Carg04356 vs. TAIR10
Match: AT2G22120.2 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-27
Identity = 90/301 (29.90%), Postives = 124/301 (41.20%), Query Frame = 0


Query: 44  QCRICLDTGGEDLIAPCHCKGTQKY-------------EGFAFAHCTECRAMFMIRANVP 103
           QCRICL+T G D IAPC CKGT KY             EGFAFAHCT C+A + +R +  
Sbjct: 34  QCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYYLRVHSA 93

Query: 104 TDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVY---KFYGEELREMFGYEEHPYGF 163
            DR W  LKF+F V RD   IF+ VQL++A L  +VY    +    LR ++G++     +
Sbjct: 94  GDRKWRTLKFRFFVTRDILSIFLAVQLVIAALAYMVYFIDSYQQSWLRHIWGFDSEVTFY 153

Query: 164 Y----------------------------------------------------------- 223
           Y                                                           
Sbjct: 154 YMCGALLFFALLGLSGCVITCYDRRVRNDLAQPCRELCLCCCQPGICTDCHLPGTICMWA 213

Query: 224 ----------------------------------AMAVLAII-LVGLLYGFFIAIICGQR 227
                                             A+ +L +  ++G+ Y   +A + GQR
Sbjct: 214 DCTACTEGCASAVSECGGCLGGAGEAGLPLLFITALVILGLFTVIGIFYSVLVATMVGQR 273

[Close]

BLAST of Carg04356 vs. TAIR10
Match: AT1G11020.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 112.5 bits (280), Expect = 4.0e-25
Identity = 90/300 (30.00%), Postives = 127/300 (42.33%), Query Frame = 0


Query: 3   SVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTG----GEDLIA 62
           S  S S A ++    +    ++DL N      C         CRICL+      G++LI+
Sbjct: 30  SSASPSAASVVAGNSDEIKAEEDLENDASSAPC---------CRICLEDDSELLGDELIS 89

Query: 63  PCHCKGTQKY-------------EGFAFAHCTECRAMFMIRANVPTDR--WWLRLKFQFL 122
           PC CKGTQ++             EGFAF+HCT C+A F +R     D   W  + KF+  
Sbjct: 90  PCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVEPFEDNNSWRRKAKFRLF 149

Query: 123 VARDHAFIFIIVQLIVAFLGVLVYKFYGE-ELREMFG------YEEHPYGFY-------- 182
           VARD   +F+ VQ ++A +    Y    + E R  F         +HP  FY        
Sbjct: 150 VARDVLLVFLAVQTVIAVMAGFAYMMDKDGEFRNSFNDDWDRILSKHPIPFYYCIGVISF 209

Query: 183 -----------------------------------------------AMAVLAII---LV 219
                                                          A+ V+ ++   ++
Sbjct: 210 FVLTGFLGIILHCSALNGNDPRMAGCQNCCYGWGVLDCFPASMEACFALVVVFVVIFAIL 269

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BLAST of Carg04356 vs. TrEMBL
Match: tr|A0A1S3CN40|A0A1S3CN40_CUCME (E3 ubiquitin-protein ligase MARCH8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502787 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 7.0e-109
Identity = 205/234 (87.61%), Postives = 211/234 (90.17%), Query Frame = 0


Query: 1   PQSVESSSP---AEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLI 60
           PQSV SSS    AEII IGRESSV+DDDLHNLN+DETCHL+N D PQCRICLDTGGEDLI
Sbjct: 28  PQSVGSSSSAEIAEIIAIGRESSVSDDDLHNLNIDETCHLVN-DQPQCRICLDTGGEDLI 87

Query: 61  APCHCKGTQKY-------------EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLV 120
           APCHCKGTQKY             EGFAFAHCTECRAMF++RANVP DRWWLRLKFQFLV
Sbjct: 88  APCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLV 147

Query: 121 ARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGF 180
           ARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGF
Sbjct: 148 ARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGF 207

Query: 181 FIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 219
           FIAIICGQRINERHYHVLAKQELTKEYIVEDREHNK+VPELDP HVMELRMLGL
Sbjct: 208 FIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL 260

[Close]

BLAST of Carg04356 vs. TrEMBL
Match: tr|A0A0A0LE97|A0A0A0LE97_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G640630 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.0e-107
Identity = 203/234 (86.75%), Postives = 210/234 (89.74%), Query Frame = 0


Query: 1   PQSVESSSP---AEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLI 60
           PQSV SSS    AEII IGRESSV+DDDLHN N+DETCHL+N D PQCRICLDTGGEDLI
Sbjct: 28  PQSVGSSSSAEIAEIIAIGRESSVSDDDLHNPNIDETCHLVN-DQPQCRICLDTGGEDLI 87

Query: 61  APCHCKGTQKY-------------EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLV 120
           APCHCKGTQKY             EGFAFAHCTECRAMF++RANVP DRWWLRLKFQFLV
Sbjct: 88  APCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLV 147

Query: 121 ARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGF 180
           ARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGF
Sbjct: 148 ARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGF 207

Query: 181 FIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 219
           FIAIICGQRINERHYHVLAKQELTKEYIVEDREHNK+VPELDP HVMELR+LGL
Sbjct: 208 FIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRLLGL 260

[Close]

BLAST of Carg04356 vs. TrEMBL
Match: tr|A0A2P5EDK3|A0A2P5EDK3_9ROSA (Zinc finger, RING-CH-type OS=Trema orientalis OX=63057 GN=TorRG33x02_205650 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 3.2e-101
Identity = 186/230 (80.87%), Postives = 200/230 (86.96%), Query Frame = 0


Query: 2   QSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLIAPCH 61
           +SVESSS  EI  +G + ++ D+DL NL VDE C L+NAD PQCRICLD+GGEDLIAPCH
Sbjct: 28  RSVESSSSCEITTVGGDHAIIDEDLQNLRVDENCQLVNADQPQCRICLDSGGEDLIAPCH 87

Query: 62  CKGTQKY-------------EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARDH 121
           CKGTQKY             EGFAFAHCTECRAMF++RANVP DRWWLRLKFQFLVARDH
Sbjct: 88  CKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFLLRANVPPDRWWLRLKFQFLVARDH 147

Query: 122 AFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAI 181
           AFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFY MAVLAI+LVGLLYGFFIAI
Sbjct: 148 AFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYTMAVLAILLVGLLYGFFIAI 207

Query: 182 ICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 219
           ICGQRI+ERHYHVLAKQELTKEY+VEDRE NK+VPELDP HV ELRMLGL
Sbjct: 208 ICGQRISERHYHVLAKQELTKEYVVEDREANKNVPELDPSHVTELRMLGL 257

[Close]

BLAST of Carg04356 vs. TrEMBL
Match: tr|A0A2P5BWI2|A0A2P5BWI2_PARAD (Zinc finger, RING-CH-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_203930 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 7.0e-101
Identity = 185/230 (80.43%), Postives = 199/230 (86.52%), Query Frame = 0


Query: 2   QSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLIAPCH 61
           +SVESSS  EI  +G + ++ D+DL NL VDE C L+NAD PQCRICLD+GGEDLIAPCH
Sbjct: 28  RSVESSSSCEITTVGGDHAIIDEDLQNLRVDENCQLVNADQPQCRICLDSGGEDLIAPCH 87

Query: 62  CKGTQKY-------------EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARDH 121
           CKGTQKY             EGFAFAHCTECRAMF++RANVP DRWWLRLKFQFLVARDH
Sbjct: 88  CKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFLLRANVPPDRWWLRLKFQFLVARDH 147

Query: 122 AFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAI 181
           AFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFY MAVLAI+LVGLLYGFFIAI
Sbjct: 148 AFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYTMAVLAILLVGLLYGFFIAI 207

Query: 182 ICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 219
           ICGQRI+ERHYHVLAKQELTKEY+VEDRE NK+ PELDP HV ELRMLGL
Sbjct: 208 ICGQRISERHYHVLAKQELTKEYVVEDREANKNAPELDPNHVTELRMLGL 257

[Close]

BLAST of Carg04356 vs. TrEMBL
Match: tr|A0A061G9T2|A0A061G9T2_THECC (RING/FYVE/PHD zinc finger superfamily protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_027833 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 2.7e-100
Identity = 184/230 (80.00%), Postives = 199/230 (86.52%), Query Frame = 0


Query: 2   QSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLLNADLPQCRICLDTGGEDLIAPCH 61
           +S E SS  EI  IG +S V DDDL ++NVDETCHL+NAD PQCRICLD GG+DLIAPCH
Sbjct: 28  RSEECSSSCEITAIGGDSVVVDDDLEDINVDETCHLVNADHPQCRICLDIGGDDLIAPCH 87

Query: 62  CKGTQKY-------------EGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARDH 121
           CKGTQKY             EGFAFAHCTECRA+F++RANVP DRWWLRLKFQFLVARDH
Sbjct: 88  CKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRALFILRANVPPDRWWLRLKFQFLVARDH 147

Query: 122 AFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAI 181
           AFIF+IVQLIVAFLGVLVYKFYGEELREMFGY+EHPYGFY MAVLAI+LVGLLYGFFIAI
Sbjct: 148 AFIFVIVQLIVAFLGVLVYKFYGEELREMFGYDEHPYGFYTMAVLAIVLVGLLYGFFIAI 207

Query: 182 ICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGL 219
           ICGQRINERHYHVLAKQELTKEY+VEDRE NK++ ELDP HV ELRMLGL
Sbjct: 208 ICGQRINERHYHVLAKQELTKEYVVEDREDNKNILELDPSHVTELRMLGL 257

The following BLAST results are available for this feature:

BLAST of Carg04356 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948731.1	4.3e-118	93.94	E3 ubiquitin-protein ligase MARCH8-like isoform X1 [Cucurbita moschata] >XP_0229...	[more]
XP_022948733.1	4.3e-118	93.94	E3 ubiquitin-protein ligase MARCH8-like isoform X2 [Cucurbita moschata]	[more]
XP_023524617.1	2.8e-117	93.51	uncharacterized protein LOC111788515, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022998756.1	9.0e-116	92.64	E3 ubiquitin-protein ligase MARCH8-like isoform X1 [Cucurbita maxima]	[more]
XP_022998757.1	9.0e-116	92.64	E3 ubiquitin-protein ligase MARCH8-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg04356 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50440.1	1.4e-86	72.73	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G22120.2	1.5e-27	29.90	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT1G11020.1	4.0e-25	30.00	RING/FYVE/PHD zinc finger superfamily protein	[more]

BLAST of Carg04356 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04356 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CN40\|A0A1S3CN40_CUCME	7.0e-109	87.61	E3 ubiquitin-protein ligase MARCH8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A0A0LE97\|A0A0A0LE97_CUCSA	1.0e-107	86.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G640630 PE=4 SV=1	[more]
tr\|A0A2P5EDK3\|A0A2P5EDK3_9ROSA	3.2e-101	80.87	Zinc finger, RING-CH-type OS=Trema orientalis OX=63057 GN=TorRG33x02_205650 PE=4...	[more]
tr\|A0A2P5BWI2\|A0A2P5BWI2_PARAD	7.0e-101	80.43	Zinc finger, RING-CH-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_203930 ...	[more]
tr\|A0A061G9T2\|A0A061G9T2_THECC	2.7e-100	80.00	RING/FYVE/PHD zinc finger superfamily protein isoform 2 OS=Theobroma cacao OX=36...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR033275	MARCH-like
IPR013083	Znf_RING/FYVE/PHD
IPR011016	Znf_RING-CH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04356-RA	Carg04356-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 44..80 e-value: 0.002 score: 13.1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 31..78 e-value: 1.5E-5 score: 26.5
IPR033275	E3 ubiquitin-protein ligase MARCH-like	PANTHER	PTHR23012	MEMBRANE ASSOCIATED RING FINGER	coord: 3..205
None	No IPR available	PANTHER	PTHR23012:SF65	SUBFAMILY NOT NAMED	coord: 3..205
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 41..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04356	Csa3G640630	Cucumber (Chinese Long) v2	carcuB0223
Carg04356	ClCG07G014630	Watermelon (Charleston Gray)	carwcgB0199
Carg04356	CSPI03G28150	Wild cucumber (PI 183967)	carcpiB0230
Carg04356	Cucsa.149680	Cucumber (Gy14) v1	carcgyB0241
Carg04356	CmaCh14G011880	Cucurbita maxima (Rimu)	carcmaB0276
Carg04356	CmaCh01G000020	Cucurbita maxima (Rimu)	carcmaB0278
Carg04356	CmoCh01G000020	Cucurbita moschata (Rifu)	carcmoB0285
Carg04356	CmoCh14G012120	Cucurbita moschata (Rifu)	carcmoB0283
Carg04356	Lsi07G006750	Bottle gourd (USVL1VR-Ls)	carlsiB182
Carg04356	Cp4.1LG03g15080	Cucurbita pepo (Zucchini)	carcpeB0287
Carg04356	Cp4.1LG02g17630	Cucurbita pepo (Zucchini)	carcpeB0285
Carg04356	CsGy3G026170	Cucumber (Gy14) v2	carcgybB0213
Carg04356	CsaV3_3G030540	Cucumber (Chinese Long) v3	carcucB0228
Carg04356	Cla97C07G141560	Watermelon (97103) v2	carwmbB0205
Carg04356	Bhi01G002249	Wax gourd	carwgoB0245

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04356	Silver-seed gourd	carcarB233
Carg04356	Cucurbita maxima (Rimu)	carcmaB0282
Carg04356	Watermelon (97103) v2	carwmbB0201