CSPI05G26940 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G26940
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 25650809 .. 25651277 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACACTCAATGCAATAACCAAACCCTAAACAACTCATACTCTCTATAGTGTTGTCATTTTTGTTATCTTTGTCAATGGCTCTACGTCATGCTCCTCTCCTCTTCTTTTTCCTCCTCGTTTTAGCTTTAGCTTCTTCTTCTACGACCATGGCAACATCTAGAGCCATGTTGTTTATAGAACCAACTCCAACCATCGATGCAAAACCTTCTCCACCACCAACGGTATCTGAAGCTACGTTGGTTGCAGGATTTGGCTCATCGTTATCAACTTCCATGCCTCCAAGTTTTGGTGATTTTGTTGCTTTTGAGGTTCCTAGTGAAGTGAGTACTGCAAATCCACCAATGCCTGATTGGATGATTAGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAACCTCTTGTCTCTATTGTATGTTCAAACATGTCGTGAAAAATTGAAC

mRNA sequence

ATGGCTCTACGTCATGCTCCTCTCCTCTTCTTTTTCCTCCTCGTTTTAGCTTTAGCTTCTTCTTCTACGACCATGGCAACATCTAGAGCCATGTTGTTTATAGAACCAACTCCAACCATCGATGCAAAACCTTCTCCACCACCAACGGTATCTGAAGCTACGTTGGTTGCAGGATTTGGCTCATCGTTATCAACTTCCATGCCTCCAAGTTTTGGTGATTTTGTTGCTTTTGAGGTTCCTAGTGAAGTGAGTACTGCAAATCCACCAATGCCTGATTGGATGATTAGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAACCTCTTGTCTCTATTGTATGTTCAAACATGTCGTGA

Coding sequence (CDS)

ATGGCTCTACGTCATGCTCCTCTCCTCTTCTTTTTCCTCCTCGTTTTAGCTTTAGCTTCTTCTTCTACGACCATGGCAACATCTAGAGCCATGTTGTTTATAGAACCAACTCCAACCATCGATGCAAAACCTTCTCCACCACCAACGGTATCTGAAGCTACGTTGGTTGCAGGATTTGGCTCATCGTTATCAACTTCCATGCCTCCAAGTTTTGGTGATTTTGTTGCTTTTGAGGTTCCTAGTGAAGTGAGTACTGCAAATCCACCAATGCCTGATTGGATGATTAGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAACCTCTTGTCTCTATTGTATGTTCAAACATGTCGTGA
Homology
[Close]
BLAST of CSPI05G26940 vs. TrEMBL
Match: A0A0A0KRI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622650 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 25  MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 84
           MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS
Sbjct: 1   MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 60

Query: 85  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 128
           TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS
Sbjct: 61  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 103

[Close]
BLAST of CSPI05G26940 vs. NCBI nr
Match: gi|700197073|gb|KGN52250.1| (hypothetical protein Csa_5G622650 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 2.2e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 25  MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 84
           MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS
Sbjct: 1   MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 60

Query: 85  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 128
           TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS
Sbjct: 61  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 103

The following BLAST results are available for this feature:
BLAST of CSPI05G26940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G26940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRI3_CUCSA1.5e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622650 PE=4 SV=1[more]
BLAST of CSPI05G26940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G26940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197073|gb|KGN52250.1|2.2e-50100.00hypothetical protein Csa_5G622650 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G26940.1CSPI05G26940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G26940Csa5G622650Cucumber (Chinese Long) v2cpicuB239
CSPI05G26940ClCG05G021190Watermelon (Charleston Gray)cpiwcgB412
CSPI05G26940Lsi04G000860Bottle gourd (USVL1VR-Ls)cpilsiB372
CSPI05G26940Bhi07G000717Wax gourdcpiwgoB506
CSPI05G26940CmoCh18G009100Cucurbita moschata (Rifu)cmocpiB411
CSPI05G26940Cp4.1LG09g04040Cucurbita pepo (Zucchini)cpecpiB036
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G26940Wild cucumber (PI 183967)cpicpiB122
CSPI05G26940Cucumber (Gy14) v1cgycpiB464
CSPI05G26940Cucumber (Gy14) v1cgycpiB569
CSPI05G26940Cucurbita maxima (Rimu)cmacpiB309
CSPI05G26940Cucurbita maxima (Rimu)cmacpiB423
CSPI05G26940Cucurbita maxima (Rimu)cmacpiB743
CSPI05G26940Cucurbita maxima (Rimu)cmacpiB755
CSPI05G26940Cucurbita moschata (Rifu)cmocpiB302
CSPI05G26940Cucurbita moschata (Rifu)cmocpiB736
CSPI05G26940Cucurbita moschata (Rifu)cmocpiB745
CSPI05G26940Melon (DHL92) v3.5.1cpimeB369
CSPI05G26940Melon (DHL92) v3.5.1cpimeB390
CSPI05G26940Melon (DHL92) v3.5.1cpimeB396
CSPI05G26940Watermelon (Charleston Gray)cpiwcgB366
CSPI05G26940Watermelon (Charleston Gray)cpiwcgB432
CSPI05G26940Watermelon (97103) v1cpiwmB380
CSPI05G26940Watermelon (97103) v1cpiwmB387
CSPI05G26940Watermelon (97103) v1cpiwmB410
CSPI05G26940Watermelon (97103) v1cpiwmB443
CSPI05G26940Cucurbita pepo (Zucchini)cpecpiB184
CSPI05G26940Cucurbita pepo (Zucchini)cpecpiB425
CSPI05G26940Cucurbita pepo (Zucchini)cpecpiB439
CSPI05G26940Bottle gourd (USVL1VR-Ls)cpilsiB393
CSPI05G26940Melon (DHL92) v3.6.1cpimedB363
CSPI05G26940Melon (DHL92) v3.6.1cpimedB384
CSPI05G26940Cucumber (Gy14) v2cgybcpiB225
CSPI05G26940Cucumber (Gy14) v2cgybcpiB286
CSPI05G26940Silver-seed gourdcarcpiB0299
CSPI05G26940Silver-seed gourdcarcpiB0522
CSPI05G26940Silver-seed gourdcarcpiB0723
CSPI05G26940Silver-seed gourdcarcpiB0877
CSPI05G26940Cucumber (Chinese Long) v3cpicucB284
CSPI05G26940Watermelon (97103) v2cpiwmbB402
CSPI05G26940Watermelon (97103) v2cpiwmbB425
CSPI05G26940Wax gourdcpiwgoB492