Csa5G622650 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G622650
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 24638322 .. 24638633 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACGTCTAGAGCCATGTTGTTTATAGAACCAACTCCAACCATCGATGCAAAACCTTCTCCACCACCAACGGTATCTGAAGCTACGTTGGTTGCAGGATTTGGCTCATCGTTATCAACTTCCATGCCTCCAAGTTTTGGTGATTTTGTTGCTTTTGAGGTTCCTAGTGAAGTGAGTACTGCAAATCCACCAATGCCTGATTGGATGATTAGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAACCTCTTGTCTCTATTGTATGTTCAAACATGTCGTGA

mRNA sequence

ATGGCAACGTCTAGAGCCATGTTGTTTATAGAACCAACTCCAACCATCGATGCAAAACCTTCTCCACCACCAACGGTATCTGAAGCTACGTTGGTTGCAGGATTTGGCTCATCGTTATCAACTTCCATGCCTCCAAGTTTTGGTGATTTTGTTGCTTTTGAGGTTCCTAGTGAAGTGAGTACTGCAAATCCACCAATGCCTGATTGGATGATTAGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAACCTCTTGTCTCTATTGTATGTTCAAACATGTCGTGA

Coding sequence (CDS)

ATGGCAACGTCTAGAGCCATGTTGTTTATAGAACCAACTCCAACCATCGATGCAAAACCTTCTCCACCACCAACGGTATCTGAAGCTACGTTGGTTGCAGGATTTGGCTCATCGTTATCAACTTCCATGCCTCCAAGTTTTGGTGATTTTGTTGCTTTTGAGGTTCCTAGTGAAGTGAGTACTGCAAATCCACCAATGCCTGATTGGATGATTAGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAACCTCTTGTCTCTATTGTATGTTCAAACATGTCGTGA

Protein sequence

MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVSTANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS*
Homology
[Close]
BLAST of Csa5G622650 vs. TrEMBL
Match: A0A0A0KRI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622650 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.0e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 60
           MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS
Sbjct: 1   MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 60

Query: 61  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 104
           TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS
Sbjct: 61  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 103

[Close]
BLAST of Csa5G622650 vs. NCBI nr
Match: gi|700197073|gb|KGN52250.1| (hypothetical protein Csa_5G622650 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 7.2e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 60
           MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS
Sbjct: 1   MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 60

Query: 61  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 104
           TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS
Sbjct: 61  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 103

The following BLAST results are available for this feature:
BLAST of Csa5G622650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRI3_CUCSA5.0e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622650 PE=4 SV=1[more]
BLAST of Csa5G622650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197073|gb|KGN52250.1|7.2e-52100.00hypothetical protein Csa_5G622650 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G622650.1Csa5G622650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G622650ClCG05G021190Watermelon (Charleston Gray)cuwcgB394
Csa5G622650Lsi04G000860Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G622650Bhi07G000717Wax gourdcuwgoB501
Csa5G622650CSPI05G26940Wild cucumber (PI 183967)cpicuB239
Csa5G622650CmoCh18G009100Cucurbita moschata (Rifu)cmocuB406
Csa5G622650Cp4.1LG09g04040Cucurbita pepo (Zucchini)cpecuB041
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G622650Cucurbita pepo (Zucchini)cpecuB182
Csa5G622650Cucurbita pepo (Zucchini)cpecuB427
Csa5G622650Cucurbita pepo (Zucchini)cpecuB439
Csa5G622650Bottle gourd (USVL1VR-Ls)culsiB389
Csa5G622650Cucumber (Gy14) v2cgybcuB223
Csa5G622650Cucumber (Gy14) v2cgybcuB280
Csa5G622650Melon (DHL92) v3.6.1cumedB359
Csa5G622650Melon (DHL92) v3.6.1cumedB377
Csa5G622650Silver-seed gourdcarcuB0295
Csa5G622650Silver-seed gourdcarcuB0515
Csa5G622650Silver-seed gourdcarcuB0709
Csa5G622650Silver-seed gourdcarcuB0857
Csa5G622650Watermelon (97103) v2cuwmbB383
Csa5G622650Watermelon (97103) v2cuwmbB404
Csa5G622650Wax gourdcuwgoB488
Csa5G622650Cucumber (Gy14) v1cgycuB441
Csa5G622650Cucumber (Gy14) v1cgycuB540
Csa5G622650Cucurbita maxima (Rimu)cmacuB305
Csa5G622650Cucurbita maxima (Rimu)cmacuB417
Csa5G622650Cucurbita maxima (Rimu)cmacuB738
Csa5G622650Cucurbita maxima (Rimu)cmacuB748
Csa5G622650Cucurbita moschata (Rifu)cmocuB294
Csa5G622650Cucurbita moschata (Rifu)cmocuB738
Csa5G622650Cucurbita moschata (Rifu)cmocuB727
Csa5G622650Melon (DHL92) v3.5.1cumeB377
Csa5G622650Melon (DHL92) v3.5.1cumeB394
Csa5G622650Watermelon (Charleston Gray)cuwcgB414
Csa5G622650Watermelon (97103) v1cuwmB380
Csa5G622650Watermelon (97103) v1cuwmB401
Csa5G622650Watermelon (97103) v1cuwmB430