CSPI05G26940.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI05G26940.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 25650809 .. 25651277 (-)
Sequence length384
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACACTCAATGCAATAACCAAACCCTAAACAACTCATACTCTCTATAGTGTTGTCATTTTTGTTATCTTTGTCAATGGCTCTACGTCATGCTCCTCTCCTCTTCTTTTTCCTCCTCGTTTTAGCTTTAGCTTCTTCTTCTACGACCATGGCAACATCTAGAGCCATGTTGTTTATAGAACCAACTCCAACCATCGATGCAAAACCTTCTCCACCACCAACGGTATCTGAAGCTACGTTGGTTGCAGGATTTGGCTCATCGTTATCAACTTCCATGCCTCCAAGTTTTGGTGATTTTGTTGCTTTTGAGGTTCCTAGTGAAGTGAGTACTGCAAATCCACCAATGCCTGATTGGATGATTAGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAACCTCTTGTCTCTATTGTATGTTCAAACATGTCGTGAAAAATTGAAC

mRNA sequence

ATGGCTCTACGTCATGCTCCTCTCCTCTTCTTTTTCCTCCTCGTTTTAGCTTTAGCTTCTTCTTCTACGACCATGGCAACATCTAGAGCCATGTTGTTTATAGAACCAACTCCAACCATCGATGCAAAACCTTCTCCACCACCAACGGTATCTGAAGCTACGTTGGTTGCAGGATTTGGCTCATCGTTATCAACTTCCATGCCTCCAAGTTTTGGTGATTTTGTTGCTTTTGAGGTTCCTAGTGAAGTGAGTACTGCAAATCCACCAATGCCTGATTGGATGATTAGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAACCTCTTGTCTCTATTGTATGTTCAAACATGTCGTGA

Coding sequence (CDS)

ATGGCTCTACGTCATGCTCCTCTCCTCTTCTTTTTCCTCCTCGTTTTAGCTTTAGCTTCTTCTTCTACGACCATGGCAACATCTAGAGCCATGTTGTTTATAGAACCAACTCCAACCATCGATGCAAAACCTTCTCCACCACCAACGGTATCTGAAGCTACGTTGGTTGCAGGATTTGGCTCATCGTTATCAACTTCCATGCCTCCAAGTTTTGGTGATTTTGTTGCTTTTGAGGTTCCTAGTGAAGTGAGTACTGCAAATCCACCAATGCCTGATTGGATGATTAGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCTAGTGATCGTAGGAACAGTGAACCTCTTGTCTCTATTGTATGTTCAAACATGTCGTGA
Homology
[Close]
BLAST of CSPI05G26940.1 vs. TrEMBL
Match: A0A0A0KRI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622650 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 25  MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 84
           MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS
Sbjct: 1   MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 60

Query: 85  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 128
           TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS
Sbjct: 61  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 103

[Close]
BLAST of CSPI05G26940.1 vs. NCBI nr
Match: gi|700197073|gb|KGN52250.1| (hypothetical protein Csa_5G622650 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 2.2e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 25  MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 84
           MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS
Sbjct: 1   MATSRAMLFIEPTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVS 60

Query: 85  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 128
           TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS
Sbjct: 61  TANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 103

The following BLAST results are available for this feature:
BLAST of CSPI05G26940.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G26940.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRI3_CUCSA1.5e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622650 PE=4 SV=1[more]
BLAST of CSPI05G26940.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G26940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197073|gb|KGN52250.1|2.2e-50100.00hypothetical protein Csa_5G622650 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI05G26940CSPI05G26940gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI05G26940.1CSPI05G26940.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G26940.1.utr3p1CSPI05G26940.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G26940.1.cds1CSPI05G26940.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G26940.1.utr5p1CSPI05G26940.1.utr5p1five_prime_UTR