CSPI04G20600 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G20600
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 18840022 .. 18840606 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAACAGCCCTTAGCAAAACTTGACTCCCAAGAAAGAAAGAAAAAAAAGAGCCGTTGGTGGTGACGTGGATTTTTCCATCCTGTCTGAAATTCCACCAACTATCTCAAATTCATCAATTCCATTCCACACTCTTAGTCTTACCTTCATCATCTATCATCATGTCTCCCTCTACTTCTTCCTTTCAATGTTCTCTTTCCGCCTCCCCAAACACCCATCAATTCCTCATTGTTCGATTTCAGTATTCCAGCCGTCTCATCACTTTAGATCAAATACTTCAACAGACTCCCTCAACCCTCATGGGAATACTCTGATTCTTTTTTCTAATCTCCTCCACCCTCGACAACAACAATCAATTCACTTTTTGGTTAATCAGTTTCTGTGTTTCTTCAACCTCCATTCCTCTGTTTTCCAAATCATTTGTTATAAGATTCTCTCCTTTGCTCTACAGTTTTGTGCCATTCCTCCGAGCTTGAAAATTGAAGCCAACATCGCTAATATGGATGACTTGATTATCGGAGAGCAAGGATTTCAAGAAACTCCTCCACCCCCAAGGACAACAGGGGTGCCCGGAGTTTGCAATTGA

mRNA sequence

ATGTTCTCTTTCCGCCTCCCCAAACACCCATCAATTCCTCATTGTTCGATTTCAGTATTCCAGCCGTCTCATCACTTTAGATCAAATACTTCAACAGACTCCCTCAACCCTCATGGGAATACTCTGATTCTTTTTTCTAATCTCCTCCACCCTCGACAACAACAATCAATTCACTTTTTGGTTAATCAGTTTCTGTGTTTCTTCAACCTCCATTCCTCTGTTTTCCAAATCATTTGTTATAAGATTCTCTCCTTTGCTCTACAGTTTTGTGCCATTCCTCCGAGCTTGAAAATTGAAGCCAACATCGCTAATATGGATGACTTGATTATCGGAGAGCAAGGATTTCAAGAAACTCCTCCACCCCCAAGGACAACAGGGGTGCCCGGAGTTTGCAATTGA

Coding sequence (CDS)

ATGTTCTCTTTCCGCCTCCCCAAACACCCATCAATTCCTCATTGTTCGATTTCAGTATTCCAGCCGTCTCATCACTTTAGATCAAATACTTCAACAGACTCCCTCAACCCTCATGGGAATACTCTGATTCTTTTTTCTAATCTCCTCCACCCTCGACAACAACAATCAATTCACTTTTTGGTTAATCAGTTTCTGTGTTTCTTCAACCTCCATTCCTCTGTTTTCCAAATCATTTGTTATAAGATTCTCTCCTTTGCTCTACAGTTTTGTGCCATTCCTCCGAGCTTGAAAATTGAAGCCAACATCGCTAATATGGATGACTTGATTATCGGAGAGCAAGGATTTCAAGAAACTCCTCCACCCCCAAGGACAACAGGGGTGCCCGGAGTTTGCAATTGA
Homology
[Close]
BLAST of CSPI04G20600 vs. TrEMBL
Match: A0A0A0L1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539600 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 6.4e-68
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MFSFRLPKHPSIPHCSISVFQPSHHFRSNTSTDSLNPHGNTLILFSNLLHPRQQQSIHFL 60
           MFSFRLPKHPSIPHCSISVFQPSHHFRSNTSTDSLNPHGNTLILFSNLLHPRQQQSIHFL
Sbjct: 1   MFSFRLPKHPSIPHCSISVFQPSHHFRSNTSTDSLNPHGNTLILFSNLLHPRQQQSIHFL 60

Query: 61  VNQFLCFFNLHSSVFQIICYKILSFALQFCAIPPSLKIEANIANMDDLIIGEQGFQETPP 120
           VNQFLCFFNLHSSVFQIICYKILSFALQFCAIPPS KIEANIANMDDLIIGEQGFQETPP
Sbjct: 61  VNQFLCFFNLHSSVFQIICYKILSFALQFCAIPPSFKIEANIANMDDLIIGEQGFQETPP 120

Query: 121 PPRTTGVP 129
           PPRTTGVP
Sbjct: 121 PPRTTGVP 128

[Close]
BLAST of CSPI04G20600 vs. NCBI nr
Match: gi|700199686|gb|KGN54844.1| (hypothetical protein Csa_4G539600 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 9.2e-68
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MFSFRLPKHPSIPHCSISVFQPSHHFRSNTSTDSLNPHGNTLILFSNLLHPRQQQSIHFL 60
           MFSFRLPKHPSIPHCSISVFQPSHHFRSNTSTDSLNPHGNTLILFSNLLHPRQQQSIHFL
Sbjct: 1   MFSFRLPKHPSIPHCSISVFQPSHHFRSNTSTDSLNPHGNTLILFSNLLHPRQQQSIHFL 60

Query: 61  VNQFLCFFNLHSSVFQIICYKILSFALQFCAIPPSLKIEANIANMDDLIIGEQGFQETPP 120
           VNQFLCFFNLHSSVFQIICYKILSFALQFCAIPPS KIEANIANMDDLIIGEQGFQETPP
Sbjct: 61  VNQFLCFFNLHSSVFQIICYKILSFALQFCAIPPSFKIEANIANMDDLIIGEQGFQETPP 120

Query: 121 PPRTTGVP 129
           PPRTTGVP
Sbjct: 121 PPRTTGVP 128

[Close]
BLAST of CSPI04G20600 vs. NCBI nr
Match: gi|659083325|ref|XP_008442291.1| (PREDICTED: RING finger protein 165-like [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.9e-28
Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = 1 

Query: 39  GNTLILFSNLLHPRQQQSIHFLVNQFLCFFNLHSSVFQIICYKILSFALQFCAIPPSLKI 98
           G+TLI FSNL HPRQQQSI FLVNQFLC FNLHSSV + IC++ILSFALQF AI PS KI
Sbjct: 2   GDTLIPFSNLRHPRQQQSIQFLVNQFLCSFNLHSSVRRTICHEILSFALQFRAILPSFKI 61

Query: 99  EANIANMDDLIIGEQGFQETPPPPRTTGVP 129
           EANI +++DLIIGEQGFQET PPPRT G P
Sbjct: 62  EANIDHVEDLIIGEQGFQET-PPPRTRGAP 90

[Close]
BLAST of CSPI04G20600 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 64/92 (69.57%), Postives = 71/92 (77.17%), Query Frame = 1 

Query: 39  GNTLILFSNLLHPRQQQSIHFLVNQFLCFFNLHS--SVFQIICYKILSFALQFCAIPPSL 98
           G TLI FSNL HP QQQSI FLVN+FL  FNLHS  S  + IC KILSFALQF  +  S 
Sbjct: 49  GETLIPFSNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFHNVHGSF 108

Query: 99  KIEANIANMDDLIIGEQGFQETPPPPRTTGVP 129
           KIEAN+ +++DLIIGEQGFQETP PPRTTG P
Sbjct: 109 KIEANVEHVEDLIIGEQGFQETPSPPRTTGAP 140

[Close]
BLAST of CSPI04G20600 vs. NCBI nr
Match: gi|659114890|ref|XP_008457277.1| (PREDICTED: RING finger protein 165-like [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 41/95 (43.16%), Postives = 54/95 (56.84%), Query Frame = 1 

Query: 39  GNTLILFSNLLHPRQQQSIHFLVNQFLCFFNLHSSVFQIICYKILSFALQFCAIPPSLKI 98
           G  L   SNL  P QQQ + +LVN+FL  FNL SSV +II + ILSFA QF      +KI
Sbjct: 57  GEALFSLSNLRCPLQQQELQYLVNEFLHSFNLRSSVCRIISHNILSFAQQFDINNEWVKI 116

Query: 99  EANIANMDDLIIGEQGFQETPP---PPRTTGVPGV 131
           EAN+ ++      ++ + E PP   P  T G  G+
Sbjct: 117 EANVDHI------KEYWTEAPPELNPISTVGEEGL 145

The following BLAST results are available for this feature:
BLAST of CSPI04G20600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G20600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1B0_CUCSA6.4e-6899.22Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539600 PE=4 SV=1[more]
BLAST of CSPI04G20600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G20600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199686|gb|KGN54844.1|9.2e-6899.22hypothetical protein Csa_4G539600 [Cucumis sativus][more]
gi|659083325|ref|XP_008442291.1|1.9e-2877.78PREDICTED: RING finger protein 165-like [Cucumis melo][more]
gi|659121671|ref|XP_008460768.1|2.8e-2469.57PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|659114890|ref|XP_008457277.1|2.6e-0643.16PREDICTED: RING finger protein 165-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G20600.1CSPI04G20600.1mRNA