CsaV3_4G031030 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G031030
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RING finger protein 165-like
Location	chr4 : 21217062 .. 21217538 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTTTCCGCCTCCCCAAACACCCTTCAATTCCTCATTGTTCGATTTCGGTATTCCAGCCGTCTCATCACTTTAGATCAAATACTTCAACAGACTCCCTCAACCCTCATGGGAACACTCTGATTCTTTTTTCTAATCTCCTCCACCCTCGACAACAACAATCAATTCACTTTTTGGTTAATCAGTTTCTGTGTTTCTTCAACCTCCATTCCTCTGTTTTCCAAATCATTTGTTATAAGATTCTCTCCTTTGCTCTACAGTTTTGTGCCATTCCTCCGAGCTTCAAAATTGAAGCCAACATCGCTAATATGGATGACTTGATTATCGGAGAGCAAGGATTTCAAGAAACTCCTCCACCCCCAAGGACAACAGGGGTGCCGGAGTTTGCAATTGAGAGACTAATGACGCAGAAATTTGATGGGTTCAATAAAGAAGAAAGAAGAAGAAATTGGAGATTGCAGTGTTTGTTATGA

mRNA sequence

ATGTTCTCTTTCCGCCTCCCCAAACACCCTTCAATTCCTCATTGTTCGATTTCGTTTTGTGCCATTCCTCCGAGCTTCAAAATTGAAGCCAACATCGCTAATATGGATGACTTGATTATCGGAGAGCAAGGATTTCAAGAAACTCCTCCACCCCCAAGGACAACAGGGGTGCCGGAGTTTGCAATTGAGAGACTAATGACGCAGAAATTTGATGGGTTCAATAAAGAAGAAAGAAGAAGAAATTGGAGATTGCAGTGTTTGTTATGA

Coding sequence (CDS)

ATGTTCTCTTTCCGCCTCCCCAAACACCCTTCAATTCCTCATTGTTCGATTTCGTTTTGTGCCATTCCTCCGAGCTTCAAAATTGAAGCCAACATCGCTAATATGGATGACTTGATTATCGGAGAGCAAGGATTTCAAGAAACTCCTCCACCCCCAAGGACAACAGGGGTGCCGGAGTTTGCAATTGAGAGACTAATGACGCAGAAATTTGATGGGTTCAATAAAGAAGAAAGAAGAAGAAATTGGAGATTGCAGTGTTTGTTATGA

Protein sequence

MFSFRLPKHPSIPHCSISFCAIPPSFKIEANIANMDDLIIGEQGFQETPPPPRTTGVPEFAIERLMTQKFDGFNKEERRRNWRLQCLL

Homology

[Close]

BLAST of CsaV3_4G031030 vs. NCBI nr
Match: KGN54844.1 (hypothetical protein Csa_4G539600 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 5.4e-36
Identity = 88/158 (55.70%), Postives = 88/158 (55.70%), Query Frame = 0


Query: 1   MFSFRLPKHPSIPHCSIS------------------------------------------ 60
           MFSFRLPKHPSIPHCSIS                                          
Sbjct: 1   MFSFRLPKHPSIPHCSISVFQPSHHFRSNTSTDSLNPHGNTLILFSNLLHPRQQQSIHFL 60

Query: 61  ----------------------------FCAIPPSFKIEANIANMDDLIIGEQGFQETPP 89
                                       FCAIPPSFKIEANIANMDDLIIGEQGFQETPP
Sbjct: 61  VNQFLCFFNLHSSVFQIICYKILSFALQFCAIPPSFKIEANIANMDDLIIGEQGFQETPP 120

[Close]

BLAST of CsaV3_4G031030 vs. NCBI nr
Match: XP_008442291.1 (PREDICTED: RING finger protein 165-like [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 16  SISFCAIPPSFKIEANIANMDDLIIGEQGFQETPPPPRTTGVPEFAIERL-MTQKFDGFN 75
           ++ F AI PSFKIEANI +++DLIIGEQGFQET PPPRT G PE AIERL M QKFDGFN
Sbjct: 49  ALQFRAILPSFKIEANIDHVEDLIIGEQGFQET-PPPRTRGAPESAIERLIMKQKFDGFN 108

Query: 76  KEE 78
           KEE
Sbjct: 109 KEE 110

[Close]

BLAST of CsaV3_4G031030 vs. TrEMBL
Match: tr|A0A0A0L1B0|A0A0A0L1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539600 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.6e-36
Identity = 88/158 (55.70%), Postives = 88/158 (55.70%), Query Frame = 0


Query: 1   MFSFRLPKHPSIPHCSIS------------------------------------------ 60
           MFSFRLPKHPSIPHCSIS                                          
Sbjct: 1   MFSFRLPKHPSIPHCSISVFQPSHHFRSNTSTDSLNPHGNTLILFSNLLHPRQQQSIHFL 60

Query: 61  ----------------------------FCAIPPSFKIEANIANMDDLIIGEQGFQETPP 89
                                       FCAIPPSFKIEANIANMDDLIIGEQGFQETPP
Sbjct: 61  VNQFLCFFNLHSSVFQIICYKILSFALQFCAIPPSFKIEANIANMDDLIIGEQGFQETPP 120

[Close]

BLAST of CsaV3_4G031030 vs. TrEMBL
Match: tr|A0A1S3B605|A0A1S3B605_CUCME (RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103486202 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.0e-16
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 16  SISFCAIPPSFKIEANIANMDDLIIGEQGFQETPPPPRTTGVPEFAIERL-MTQKFDGFN 75
           ++ F AI PSFKIEANI +++DLIIGEQGFQET PPPRT G PE AIERL M QKFDGFN
Sbjct: 49  ALQFRAILPSFKIEANIDHVEDLIIGEQGFQET-PPPRTRGAPESAIERLIMKQKFDGFN 108

Query: 76  KEE 78
           KEE
Sbjct: 109 KEE 110

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031030 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54844.1	5.4e-36	55.70	hypothetical protein Csa_4G539600 [Cucumis sativus]	[more]
XP_008442291.1	1.1e-15	76.19	PREDICTED: RING finger protein 165-like [Cucumis melo]	[more]

BLAST of CsaV3_4G031030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1B0\|A0A0A0L1B0_CUCSA	3.6e-36	55.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539600 PE=4 SV=1	[more]
tr\|A0A1S3B605\|A0A1S3B605_CUCME	7.0e-16	76.19	RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103486202 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031030.1	CsaV3_4G031030.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G031030	CSPI04G20600	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G031030	Cucsa.357580	Cucumber (Gy14) v1	cgycucB543

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G031030	Silver-seed gourd	carcucB0314
CsaV3_4G031030	Silver-seed gourd	carcucB0898
CsaV3_4G031030	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G031030	Cucurbita maxima (Rimu)	cmacucB0799
CsaV3_4G031030	Cucurbita maxima (Rimu)	cmacucB1018
CsaV3_4G031030	Cucurbita moschata (Rifu)	cmocucB0782
CsaV3_4G031030	Cucurbita moschata (Rifu)	cmocucB1001
CsaV3_4G031030	Cucurbita pepo (Zucchini)	cpecucB0076
CsaV3_4G031030	Cucurbita pepo (Zucchini)	cpecucB0613
CsaV3_4G031030	Wild cucumber (PI 183967)	cpicucB222
CsaV3_4G031030	Bottle gourd (USVL1VR-Ls)	cuclsiB279
CsaV3_4G031030	Melon (DHL92) v3.5.1	cucmeB336
CsaV3_4G031030	Melon (DHL92) v3.6.1	cucmedB329
CsaV3_4G031030	Watermelon (Charleston Gray)	cucwcgB319
CsaV3_4G031030	Watermelon (97103) v1	cucwmB357
CsaV3_4G031030	Watermelon (97103) v2	cucwmbB308
CsaV3_4G031030	Wax gourd	cucwgoB403
CsaV3_4G031030	Wax gourd	cucwgoB414