CSPI04G00550 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G00550
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Zinc finger SWIM domain-containing protein 7
Location	Chr4 : 276363 .. 278278 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCGAGTATTGTGGTAGCTGAAGCTGTGTGGAAGAAGATCGAGTCCACTCGATTAGGTTCTTTCTTTCTTTCTTTCTACTTAGCTTGTTTTTTTCTTTTCGAATCTTTACTGAAAGAAGTTGGAACCGATTTTCGTAGTGACTGATGATCAGCTTTCAATGTGAGTATTCTCGGTTCTTTCCATTTCCACTACTTTTTCTTCATCTTCTTTATGTATGTAATGTTTATGCAACCTTGATGTTGCTCCAGCTTGCATTTCTTGTTTGGCAAGAACTTCGAGCGAGCTACTCGAATTGTTGATCAAAGAGGGGTCAAGAAAATTTCAGGCCACCCAAGCACACGATCTATCTTTCAGGTCAATTTCTATTATTGTTATTGTTATTGTTATTTTTTTTTTTTTTAGTTGAAATATTCAAATTGATTTTAGGTTTGGCAAAATGAAGATTCTGTTTGGGGGTTTGCTGAGAGTATCCTAAAATAGAACGTACTTCTGTTCTGTTTAAAGTCTCATGATATGGAATGGCACGGAGAATTAAGCCATGTTTCTTCTCCATCTCCCTAGATATATAGGAAGATTTACCCCTAGGGTTAAGAATCTTTCCTATACATATTAAAAATAGCGCGAAACTAAATGTTAGGAGGGGGTGGAGTTCGTTGGTTTGATTCCATGTGATATGTACCACCAGACCTAGGAAGTTAATCTTAAGAATATGAATATAAGATTAAATACTGTAGTCTATTTCCTCGAGCTTTTGGAGTTAGTCTTGGGTTAATATGGTATAAGAGTTGCACTTGTCAATATGAAATTTTTTCTCTCTGTTTCATATTTGAAAAAGAAAAAAAAAAGTCATTTATTTCCGCTCATAACAAGATAGATTGCTCCAAGTGGAATCCACATCATGACTCAAGTATGGTTCATCACACAAATCAACCTTAGCCAAACCAAGAGCTAATATGTTCTCTTTTAACATAAATGGATCAGTTTTGAGAAAACCTGGAGGGCTGCTCTAGCCGCCATTAGTTGAACTTCTAGTTAATAAGAACCAATCTAAATATTACAGGACTTAAAAATAGGATGAGTTCAAGTCATAATGACCATTTAACTAAGATTTGGAATCTTGTGAGTTTTCTTAGCAACCAAATGTTGATGGATCAAACAATTGTCCTATGAAACTAATTGAGATGTGCAAGTTAATTTGGATAATGATAAATATTAACAAAAAGAAAAAAGAAATTCGTTGATACACGTACTTTACTTCCTCTTGGGCGAAAGAAATCCTTTGTTCTACTTTGAATTTCTGTAATATATTTTCCTCTCTAGTTAATATCGATAGTCACTTGTTCGGTTTTTTTTGCTAATTTCCAAGCTCGCAATCAAGGGAAGCATTGGGAATGAGTACAAAAGATTATGGTATATTTTTTCCTTCATACTTGTTCTTAACAAAACTTTCTCGAAATAAAAAGTTCTTCGTTGCTGGACTGAAGACAATGGAAATCGTTAATTTAGAATATGTAACAGCTTAAGCACTTTTAAACTCGAGGATAGCTTGGAAGATGAGTTCAGTTTTCTTACAATGTTAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATCTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTGTAAGCACCAGTTCTTATTAATATGTAATGAAAATGAGTTGAAGCTTGATGAGAACCTTAATCCCCTTCCACTTCTCAACCGTCTTTATTTCCTGCTTCTTTCTTTTATTTCTTTGGTAGTGCAAGCATCAATTAGCTGCAAGGCTTGCTGCTTCAGTGGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCAATATTGTTGTCCAATCTCTAA

mRNA sequence

ATGAGTGCGAGTATTGTGGTAGCTGAAGCTGTGTGGAAGAAGATCGAGTCCACTCGATTAGTGACTGATGATCAGCTTTCAATCTTGCATTTCTTGTTTGGCAAGAACTTCGAGCGAGCTACTCGAATTGTTGATCAAAGAGGGGTCAAGAAAATTTCAGGCCACCCAAGCACACGATCTATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATCTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTTGCAAGCATCAATTAGCTGCAAGGCTTGCTGCTTCAGTGGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCAATATTGTTGTCCAATCTCTAA

Coding sequence (CDS)

ATGAGTGCGAGTATTGTGGTAGCTGAAGCTGTGTGGAAGAAGATCGAGTCCACTCGATTAGTGACTGATGATCAGCTTTCAATCTTGCATTTCTTGTTTGGCAAGAACTTCGAGCGAGCTACTCGAATTGTTGATCAAAGAGGGGTCAAGAAAATTTCAGGCCACCCAAGCACACGATCTATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATCTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTTGCAAGCATCAATTAGCTGCAAGGCTTGCTGCTTCAGTGGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCAATATTGTTGTCCAATCTCTAA

Homology

[Close]

BLAST of CSPI04G00550 vs. Swiss-Prot
Match: ZSWM7_DANRE (Zinc finger SWIM domain-containing protein 7 OS=Danio rerio GN=zswim7 PE=2 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-15
Identity = 50/134 (37.31%), Postives = 77/134 (57.46%), Query Frame = 1


Query: 2   SASIVVAEAVWKKIEST----RLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPS 61
           S+ + VAE + K ++ T    + + DD L  L F+FG    +A  +VDQ  V  +S  PS
Sbjct: 3   SSLVSVAEQLLKDLQRTYSEIKQIPDDLLIALRFVFGPCALQALDLVDQHSVTCVSS-PS 62

Query: 62  TRSIFQVVGESRRKEEYLCFPE-NFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACI 121
            R  FQV+G S R   Y CF   ++C C +F + ++ R E L CKH LA  L+ ++G C 
Sbjct: 63  GRKAFQVLGGSGRL--YTCFTSCHYCPCPAFSFTVLRRNESLMCKHLLAVILSQAMGLCQ 122

Query: 122 EVKVSDEELAILLS 131
           + +VSD+++  +LS
Sbjct: 123 QEQVSDQQMTHILS 133

[Close]

BLAST of CSPI04G00550 vs. TrEMBL
Match: A0A0A0KWG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001010 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 6.4e-68
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS
Sbjct: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV
Sbjct: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of CSPI04G00550 vs. TrEMBL
Match: A0A061E048_THECC (Zinc finger SWIM domain-containing protein 7 isoform 1 OS=Theobroma cacao GN=TCM_007185 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.3e-57
Identity = 110/132 (83.33%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 1   MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           M+AS +VAE+VWK IEST  V+++QLSILHFLFGKNFERATRIVDQRGVKKISG PS RS
Sbjct: 33  MTASHLVAESVWKTIESTHSVSEEQLSILHFLFGKNFERATRIVDQRGVKKISGEPSGRS 92

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEY CFPE++CACYSFFYDI NRGEQLCCKHQLAARLA S+GAC+EVKV
Sbjct: 93  IFQVVGESRRKEEYFCFPEHYCACYSFFYDIANRGEQLCCKHQLAARLAGSLGACVEVKV 152

Query: 121 SDEELAILLSNL 133
           SDE+LA+LLS L
Sbjct: 153 SDEQLALLLSEL 164

[Close]

BLAST of CSPI04G00550 vs. TrEMBL
Match: A0A067F2X6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035575mg PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-56
Identity = 108/132 (81.82%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSAS +VAE+VWK IESTR VT+DQLSILHFLFGKN ERATRIVDQRGV++ISG PS RS
Sbjct: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IF+VVGESRRKEEYLCF EN+CACYSFFYDIVN+GEQLCCKHQLAARLA+++GAC+EV V
Sbjct: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120

Query: 121 SDEELAILLSNL 133
           SDE+LA+LL+ L
Sbjct: 121 SDEQLALLLAKL 132

[Close]

BLAST of CSPI04G00550 vs. TrEMBL
Match: V4S6R4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029563mg PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-56
Identity = 108/132 (81.82%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSAS +VAE+VWK IESTR VT+DQLSILHFLFGKN ERATRIVDQRGV++ISG PS RS
Sbjct: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IF+VVGESRRKEEYLCF EN+CACYSFFYDIVN+GEQLCCKHQLAARLA+++GAC+EV V
Sbjct: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120

Query: 121 SDEELAILLSNL 133
           SDE+LA+LL+ L
Sbjct: 121 SDEQLALLLAKL 132

[Close]

BLAST of CSPI04G00550 vs. TrEMBL
Match: D7SXT9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00460 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.6e-56
Identity = 108/132 (81.82%), Postives = 119/132 (90.15%), Query Frame = 1


Query: 1   MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           M  S +VAE VWK+IEST  VTDDQ+SI+HFLFGKNFERATRIVDQRGVK+I G PS R 
Sbjct: 1   MGPSSLVAETVWKEIESTHSVTDDQISIMHFLFGKNFERATRIVDQRGVKRIVGEPSGRW 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESR+KEEY CF E++CACYSFFYDIVNRGEQLCCKHQLAARLAASVGAC+EVKV
Sbjct: 61  IFQVVGESRKKEEYFCFAEHYCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACVEVKV 120

Query: 121 SDEELAILLSNL 133
           SDE+LA+LLS L
Sbjct: 121 SDEQLALLLSKL 132

[Close]

BLAST of CSPI04G00550 vs. TAIR10
Match: AT4G33925.1 (AT4G33925.1 unknown protein)

HSP 1 Score: 191.4 bits (485), Expect = 3.5e-49
Identity = 88/132 (66.67%), Postives = 113/132 (85.61%), Query Frame = 1


Query: 1   MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           M+ +++VA+AVW  IEST  VT++QLSIL  LFGKN E+ATRI+D+RGVKKISG PS RS
Sbjct: 1   MNVTLLVADAVWSNIESTGSVTEEQLSILQLLFGKNLEKATRIIDKRGVKKISGLPSGRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGES+++EEYLCFP ++C CYSFFYD+V+RGE  CCKHQLAARLA+S+G   E++V
Sbjct: 61  IFQVVGESQKREEYLCFPGDYCGCYSFFYDVVSRGEHQCCKHQLAARLASSLGTYNEIEV 120

Query: 121 SDEELAILLSNL 133
           SD+ LA++LS +
Sbjct: 121 SDDHLALMLSKI 132

[Close]

BLAST of CSPI04G00550 vs. NCBI nr
Match: gi|449469114|ref|XP_004152266.1| (PREDICTED: zinc finger SWIM domain-containing protein 7 isoform X1 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 9.2e-68
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS
Sbjct: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV
Sbjct: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of CSPI04G00550 vs. NCBI nr
Match: gi|659108764|ref|XP_008454376.1| (PREDICTED: zinc finger SWIM domain-containing protein 7 [Cucumis melo])

HSP 1 Score: 261.2 bits (666), Expect = 1.0e-66
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 1


Query: 1   MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPS RS
Sbjct: 1   MSASIVVAEAVWKRIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSRRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV
Sbjct: 61  IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of CSPI04G00550 vs. NCBI nr
Match: gi|1009150346|ref|XP_015892970.1| (PREDICTED: zinc finger SWIM domain-containing protein 7 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 236.9 bits (603), Expect = 2.1e-59
Identity = 114/132 (86.36%), Postives = 124/132 (93.94%), Query Frame = 1


Query: 1   MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSAS +VAEAVWK+I+ST  VTDDQLSILHFLFGKNFERAT+IVDQRGVK++SGHPS RS
Sbjct: 1   MSASSLVAEAVWKEIQSTGSVTDDQLSILHFLFGKNFERATKIVDQRGVKRVSGHPSGRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           +FQVVGESRRKEEYLCF E FCACYSFFYDIVNRGEQLCCKHQLAARLAAS+G+CIEVKV
Sbjct: 61  VFQVVGESRRKEEYLCFAEEFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGSCIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDE+LA LL NL
Sbjct: 121 SDEQLAFLLCNL 132

[Close]

BLAST of CSPI04G00550 vs. NCBI nr
Match: gi|645261693|ref|XP_008236417.1| (PREDICTED: zinc finger SWIM domain-containing protein 7 [Prunus mume])

HSP 1 Score: 230.3 bits (586), Expect = 1.9e-57
Identity = 112/132 (84.85%), Postives = 121/132 (91.67%), Query Frame = 1


Query: 1   MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSAS +VAEAVWK IEST  VTDDQLSILHFLFGKN ERATRIVDQRGVK++ G PS RS
Sbjct: 1   MSASSLVAEAVWKAIESTGSVTDDQLSILHFLFGKNLERATRIVDQRGVKRVLGEPSGRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEY CF E++CACYSFFYDIVNRGEQLCCKHQLAARLAAS+GAC+EVKV
Sbjct: 61  IFQVVGESRRKEEYFCFAEHYCACYSFFYDIVNRGEQLCCKHQLAARLAASLGACVEVKV 120

Query: 121 SDEELAILLSNL 133
           SDE+LA+LLS L
Sbjct: 121 SDEQLAVLLSKL 132

[Close]

BLAST of CSPI04G00550 vs. NCBI nr
Match: gi|1009150350|ref|XP_015892972.1| (PREDICTED: zinc finger SWIM domain-containing protein 7 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 229.9 bits (585), Expect = 2.5e-57
Identity = 112/132 (84.85%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSAS +VAEAVWK+I+ST   +DDQLSILHFLFGKNFERAT+IVDQRGVK++SGHPS RS
Sbjct: 1   MSASSLVAEAVWKEIQSTG--SDDQLSILHFLFGKNFERATKIVDQRGVKRVSGHPSGRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           +FQVVGESRRKEEYLCF E FCACYSFFYDIVNRGEQLCCKHQLAARLAAS+G+CIEVKV
Sbjct: 61  VFQVVGESRRKEEYLCFAEEFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGSCIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDE+LA LL NL
Sbjct: 121 SDEQLAFLLCNL 130

The following BLAST results are available for this feature:

BLAST of CSPI04G00550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZSWM7_DANRE	5.3e-15	37.31	Zinc finger SWIM domain-containing protein 7 OS=Danio rerio GN=zswim7 PE=2 SV=2	[more]

BLAST of CSPI04G00550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWG5_CUCSA	6.4e-68	99.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001010 PE=4 SV=1	[more]
A0A061E048_THECC	2.3e-57	83.33	Zinc finger SWIM domain-containing protein 7 isoform 1 OS=Theobroma cacao GN=TCM...	[more]
A0A067F2X6_CITSI	1.1e-56	81.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035575mg PE=4 SV=1	[more]
V4S6R4_9ROSI	1.1e-56	81.82	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029563mg PE=4 SV=1	[more]
D7SXT9_VITVI	5.6e-56	81.82	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00460 PE=4 SV=...	[more]

BLAST of CSPI04G00550 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33925.1	3.5e-49	66.67	unknown protein	[more]

BLAST of CSPI04G00550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469114\|ref\|XP_004152266.1\|	9.2e-68	99.24	PREDICTED: zinc finger SWIM domain-containing protein 7 isoform X1 [Cucumis sati...	[more]
gi\|659108764\|ref\|XP_008454376.1\|	1.0e-66	97.73	PREDICTED: zinc finger SWIM domain-containing protein 7 [Cucumis melo]	[more]
gi\|1009150346\|ref\|XP_015892970.1\|	2.1e-59	86.36	PREDICTED: zinc finger SWIM domain-containing protein 7 isoform X1 [Ziziphus juj...	[more]
gi\|645261693\|ref\|XP_008236417.1\|	1.9e-57	84.85	PREDICTED: zinc finger SWIM domain-containing protein 7 [Prunus mume]	[more]
gi\|1009150350\|ref\|XP_015892972.1\|	2.5e-57	84.85	PREDICTED: zinc finger SWIM domain-containing protein 7 isoform X2 [Ziziphus juj...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007527	Znf_SWIM

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0044212	transcription regulatory region DNA binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G00550.1	CSPI04G00550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007527	Zinc finger, SWIM-type	PROFILE	PS50966	ZF_SWIM	coord: 62..111 score:
None	No IPR available	PANTHER	PTHR28498	FAMILY NOT NAMED	coord: 7..129 score: 4.1
None	No IPR available	PANTHER	PTHR28498:SF1	ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 7	coord: 7..129 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G00550	Cla006408	Watermelon (97103) v1	cpiwmB291
CSPI04G00550	Csa4G001010	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G00550	ClCG10G010580	Watermelon (Charleston Gray)	cpiwcgB280
CSPI04G00550	CsaV3_4G000500	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G00550	Cla97C10G193510	Watermelon (97103) v2	cpiwmbB278
CSPI04G00550	Cucsa.097380	Cucumber (Gy14) v1	cgycpiB103
CSPI04G00550	CmaCh04G004610	Cucurbita maxima (Rimu)	cmacpiB715
CSPI04G00550	CmoCh04G004930	Cucurbita moschata (Rifu)	cmocpiB709
CSPI04G00550	Cp4.1LG01g02610	Cucurbita pepo (Zucchini)	cpecpiB399
CSPI04G00550	CsGy4G000480	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G00550	Carg08132	Silver-seed gourd	carcpiB0407

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G00550	Bottle gourd (USVL1VR-Ls)	cpilsiB274
CSPI04G00550	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G00550	Cucumber (Gy14) v2	cgybcpiB179
CSPI04G00550	Silver-seed gourd	carcpiB0328
CSPI04G00550	Cucumber (Chinese Long) v3	cpicucB224
CSPI04G00550	Wax gourd	cpiwgoB358
CSPI04G00550	Wild cucumber (PI 183967)	cpicpiB151
CSPI04G00550	Wild cucumber (PI 183967)	cpicpiB169
CSPI04G00550	Cucumber (Gy14) v1	cgycpiB522
CSPI04G00550	Cucurbita maxima (Rimu)	cmacpiB338
CSPI04G00550	Cucurbita moschata (Rifu)	cmocpiB329
CSPI04G00550	Cucumber (Chinese Long) v2	cpicuB188
CSPI04G00550	Cucumber (Chinese Long) v2	cpicuB207
CSPI04G00550	Melon (DHL92) v3.5.1	cpimeB276
CSPI04G00550	Melon (DHL92) v3.5.1	cpimeB309
CSPI04G00550	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G00550	Cucurbita pepo (Zucchini)	cpecpiB221