CsaV3_4G000500 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G000500
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	zinc finger SWIM domain-containing protein 7
Location	chr4 : 279423 .. 281786 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAGATACAAAATTTAAGAAATGGGTATGTGAAAAAGGAAAAAAAATTGTTGTTAATTGGGAGAAAGAAGAAGAATTTGGGTGGGAATGAGTGCGAGTATTGTGGTAGCTGAAGCTGTGTGGAAGCAGATCGAGTCCACTCGATTAGGTTCTTTCTTTCTTTCTTTCTACTTAGCTTGTTTTTTTCTTTTCGAATCTTTACTGAAAGAAGTTGGAACCGATTTTCGTAGTGACTGATGATCAGCTTTCAATGTGAGTATTCTCGGTTCTTTCCATTTCCACTACTTTTTCTTCATCTTCTTTGTGTATGTAATGTTTATGCAACCTTGATGTTGCTCCAGCTTGCATTTCTTGTTTGGCAAGAACTTCGAGCGAGCTACTCGAATTGTTGATCAAAGAGGGGTCAAGAAAATTTCAGGCCACCCAAGCACACGATCTATCTTTCAGGTCAATTTCTATTATTGTTATTGTTATTGTTATTGTTATTTTTTTTTTTTTAGTTGAAATATTCAAATTGATTTTAGGTTTGGCAAAATGAAGATTCTGTTTGGGGGTTTGCTGAGAGTATCCTAAAATAGAACGTACTTCTGTTCTGTTTAAAGTCTCATGATATGGAATGGCACGGAGAATTAAGCCATGTTTCTTCTCCATCTCCCTAGATATATAGGAAGATTTACCCCTAGGGTTAAGAATCTTTCCTATACATATTAAAAATAGCGCGAAACTAAATGTTAGGAGGAGGTGGAGTTCGTTGGTTTGATTCCATGTGATATGTACCACCAGACCTAGGAAGTTAATCTTAAGAATATGAATATAAGATTAAATACTGTAGTCTATTTGCTCGAGCTTTTGGAGTTAGTCTTGGGTTAATATGGTATAAGAGTTGCACTTGTCAATATGAAATTTTTTCTCTCTGTTTCATATTTGAAAAAGAAAAAAAAAAAAGTCATTTATTTCCGCTCATAACAAGATAGATTGCTCCAAGTGGAATCCACATCATGACTCAAGTATGGTTCATCACACAAATCAACCTTAGCCAAACCAAGAGCTAATATGTTCTCTTTTAACATAAATGGATCAGTTTTGAGAAAACCTGGAGGGCTGCTCTAGCCGCCATTAGTTGAACTTCTAGTTAATAAGAACCAATCTAAATATTACAGGACTTAAAAATAGGATGAGTTCAAGTCATGATGACCATTTAACTAAGATTTGGTATCTTGTGAGTTTTCTTAGCAACCAAATGTTGATGGATCAAACAATTGTCCTATGAAACTAATTGAGATGTGCAAGTTAATTTGGATAATGACAAATATTAACAAAAAGAAAAAAGAAATTCGTTGATACACGTACTTTACTTCCTCTTGGGCGAAAGAAATCCTTTGTTCTACTTTGAATTTCTATAATATATTTTCCTCTCTAGTTAATATCGATAGTCACTTGTTCGGTTTTTTTTGCTAATTTCCAAGCTCGCAATCAAGGGAAGCATTGGGAATGAGTACAAAAGATTATGGTATATTTTTTCCTTCCTACTTGTTCTTAACAAAACTTTCTCGAAATAAGAAGTTTTTTGTTGCTGGACTGAAGACAATGGAAATCGTTAATTTAGAATATGTAACAGCTTAAGCACTTTTAAACTCGAGGATAGCTTGGAAGATGAGTTCAGTTTTCTTACAATGTTAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATCTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTGTAAGCACCAGTTCTTATTAATATGTAATGAAAATGAGTTGAAGCTTGATGAGAACCTTAATCCCCTTCCACTTCTCAACCGTCTTTATTTCCTGCTTCTTTCTTTTATTTCTTTGGTAGTGCAAGCATCAATTAGCTGCAAGGCTTGCTGCTTCAGTGGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCAATATTGTTGTCCAATCTCTAAAAGCCTGTAATGATTTTATCTAAGCCAACACTCTCAGTGCTCGAAGTTTCAGAGGTAATCAAACCACATAATTGTATGAACAGCAACCTTTTCCGGTTGTACTCAAGTAGCTTTTATACTCGATATAGCTATTGAGCTCATGTAAAACTTGCACTATGACCATCACAACATACTAGGTTTCACAGGTGAGCTGGTAATTCTAATTTGTTTGTGACTCACCAGTTACTAATATGTTCCGTTTTACGAGTAAATGAAGACAAACCAACACAGCAGTATTTCGAAATCAAACACCTATCTTCCTCTCCCATCCTACTATTTTGTTCCTTAGTTTTGCACATCCTGATAATTTTTT

mRNA sequence

ATGAGTGCGAGTATTGTGGTAGCTGAAGCTGTGTGGAAGCAGATCGAGTCCACTCGATTAGTGACTGATGATCAGCTTTCAATCTTGCATTTCTTGTTTGGCAAGAACTTCGAGCGAGCTACTCGAATTGTTGATCAAAGAGGGGTCAAGAAAATTTCAGGCCACCCAAGCACACGATCTATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATCTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTTGCAAGCATCAATTAGCTGCAAGGCTTGCTGCTTCAGTGGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCAATATTGTTGTCCAATCTCTAA

Coding sequence (CDS)

ATGAGTGCGAGTATTGTGGTAGCTGAAGCTGTGTGGAAGCAGATCGAGTCCACTCGATTAGTGACTGATGATCAGCTTTCAATCTTGCATTTCTTGTTTGGCAAGAACTTCGAGCGAGCTACTCGAATTGTTGATCAAAGAGGGGTCAAGAAAATTTCAGGCCACCCAAGCACACGATCTATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATCTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTTGCAAGCATCAATTAGCTGCAAGGCTTGCTGCTTCAGTGGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCAATATTGTTGTCCAATCTCTAA

Protein sequence

MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKVSDEELAILLSNL

Homology

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BLAST of CsaV3_4G000500 vs. NCBI nr
Match: XP_004152266.1 (PREDICTED: zinc finger SWIM domain-containing protein 7 isoform X1 [Cucumis sativus] >KGN52782.1 hypothetical protein Csa_4G001010 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 6.2e-68
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS
Sbjct: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV
Sbjct: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of CsaV3_4G000500 vs. NCBI nr
Match: XP_008454376.1 (PREDICTED: zinc finger SWIM domain-containing protein 7 [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 2.6e-66
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPS RS
Sbjct: 1   MSASIVVAEAVWKRIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSRRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV
Sbjct: 61  IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of CsaV3_4G000500 vs. NCBI nr
Match: XP_022942858.1 (zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata] >XP_022942859.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata])

HSP 1 Score: 250.0 bits (637), Expect = 4.6e-63
Identity = 124/132 (93.94%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSAS + AEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RS
Sbjct: 1   MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAAS+GACIEVKV
Sbjct: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of CsaV3_4G000500 vs. NCBI nr
Match: XP_022983272.1 (zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima] >XP_022983279.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima] >XP_022983286.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima])

HSP 1 Score: 249.6 bits (636), Expect = 6.0e-63
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSAS +VAEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RS
Sbjct: 1   MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAAS+GAC+EVKV
Sbjct: 61  IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGACVEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

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BLAST of CsaV3_4G000500 vs. NCBI nr
Match: XP_023526305.1 (zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023526312.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.4 bits (633), Expect = 1.3e-62
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSAS + AEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVK+ISG PS RS
Sbjct: 1   MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKRISGDPSGRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAAS+GACIEVKV
Sbjct: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of CsaV3_4G000500 vs. TAIR10
Match: AT4G33925.1 (unknown protein)

HSP 1 Score: 191.4 bits (485), Expect = 3.5e-49
Identity = 88/132 (66.67%), Postives = 113/132 (85.61%), Query Frame = 0


Query: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           M+ +++VA+AVW  IEST  VT++QLSIL  LFGKN E+ATRI+D+RGVKKISG PS RS
Sbjct: 1   MNVTLLVADAVWSNIESTGSVTEEQLSILQLLFGKNLEKATRIIDKRGVKKISGLPSGRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGES+++EEYLCFP ++C CYSFFYD+V+RGE  CCKHQLAARLA+S+G   E++V
Sbjct: 61  IFQVVGESQKREEYLCFPGDYCGCYSFFYDVVSRGEHQCCKHQLAARLASSLGTYNEIEV 120

Query: 121 SDEELAILLSNL 133
           SD+ LA++LS +
Sbjct: 121 SDDHLALMLSKI 132

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BLAST of CsaV3_4G000500 vs. TrEMBL
Match: tr|A0A0A0KWG5|A0A0A0KWG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001010 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.1e-68
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS
Sbjct: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV
Sbjct: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of CsaV3_4G000500 vs. TrEMBL
Match: tr|A0A1S3BZP2|A0A1S3BZP2_CUCME (zinc finger SWIM domain-containing protein 7 OS=Cucumis melo OX=3656 GN=LOC103494794 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.7e-66
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPS RS
Sbjct: 1   MSASIVVAEAVWKRIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSRRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV
Sbjct: 61  IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of CsaV3_4G000500 vs. TrEMBL
Match: tr|A0A2P4HEF4|A0A2P4HEF4_QUESU (Zinc finger swim domain-containing protein 7 OS=Quercus suber OX=58331 GN=CFP56_53177 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.5e-57
Identity = 114/132 (86.36%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSASI+VAEAVWK IEST  V++DQLSILHFLFGKNFERATRIVDQRGVK+ISG PS R 
Sbjct: 49  MSASILVAEAVWKDIESTCSVSNDQLSILHFLFGKNFERATRIVDQRGVKRISGKPSGRF 108

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEY CF E++CACYSFFYDIVNRGEQLCCKHQLAARLAAS+GACIEVKV
Sbjct: 109 IFQVVGESRRKEEYFCFAESYCACYSFFYDIVNRGEQLCCKHQLAARLAASLGACIEVKV 168

Query: 121 SDEELAILLSNL 133
           SDE+LA+LLS L
Sbjct: 169 SDEKLALLLSKL 180

[Close]

BLAST of CsaV3_4G000500 vs. TrEMBL
Match: tr|A0A2I4F6X5|A0A2I4F6X5_9ROSI (zinc finger SWIM domain-containing protein 7 isoform X1 OS=Juglans regia OX=51240 GN=LOC108996089 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.5e-57
Identity = 113/132 (85.61%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MSAS + AEAVWK IESTR VTDDQLSILHFLFGKNFERATRIVDQRGVK+ISG PS R 
Sbjct: 1   MSASSLTAEAVWKDIESTRSVTDDQLSILHFLFGKNFERATRIVDQRGVKRISGEPSGRF 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           +FQVVGESRRKEEY CF EN+CACYSFFYDIVNRGEQLCCKHQLAARLA S+GA IEVKV
Sbjct: 61  VFQVVGESRRKEEYFCFAENYCACYSFFYDIVNRGEQLCCKHQLAARLALSLGAFIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDE+LA+LLS L
Sbjct: 121 SDEQLAVLLSKL 132

[Close]

BLAST of CsaV3_4G000500 vs. TrEMBL
Match: tr|A0A2P5EYH8|A0A2P5EYH8_9ROSA (Zinc finger, SWIM-type OS=Trema orientalis OX=63057 GN=TorRG33x02_136390 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.2e-57
Identity = 111/132 (84.09%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60
           MS+S +VAE VWKQ+EST LVTD+QLS+L+FLFGKNFERATRIVDQRGVK+ISG PS RS
Sbjct: 1   MSSSRLVAETVWKQVESTGLVTDEQLSVLNFLFGKNFERATRIVDQRGVKRISGQPSGRS 60

Query: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120
           IFQVVGESRRKEEY CFPE+FCACYSFFYD VNRGEQLCCKHQLAARLA S+GACIE+KV
Sbjct: 61  IFQVVGESRRKEEYFCFPEHFCACYSFFYDTVNRGEQLCCKHQLAARLATSLGACIELKV 120

Query: 121 SDEELAILLSNL 133
           SD+ELA LLS L
Sbjct: 121 SDDELAWLLSKL 132

The following BLAST results are available for this feature:

BLAST of CsaV3_4G000500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152266.1	6.2e-68	100.00	PREDICTED: zinc finger SWIM domain-containing protein 7 isoform X1 [Cucumis sati...	[more]
XP_008454376.1	2.6e-66	97.73	PREDICTED: zinc finger SWIM domain-containing protein 7 [Cucumis melo]	[more]
XP_022942858.1	4.6e-63	93.94	zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata] >XP...	[more]
XP_022983272.1	6.0e-63	93.18	zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima] >XP_0...	[more]
XP_023526305.1	1.3e-62	93.18	zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita pepo subsp. p...	[more]

BLAST of CsaV3_4G000500 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33925.1	3.5e-49	66.67	unknown protein	[more]

BLAST of CsaV3_4G000500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G000500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWG5\|A0A0A0KWG5_CUCSA	4.1e-68	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001010 PE=4 SV=1	[more]
tr\|A0A1S3BZP2\|A0A1S3BZP2_CUCME	1.7e-66	97.73	zinc finger SWIM domain-containing protein 7 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A2P4HEF4\|A0A2P4HEF4_QUESU	1.5e-57	86.36	Zinc finger swim domain-containing protein 7 OS=Quercus suber OX=58331 GN=CFP56_...	[more]
tr\|A0A2I4F6X5\|A0A2I4F6X5_9ROSI	2.5e-57	85.61	zinc finger SWIM domain-containing protein 7 isoform X1 OS=Juglans regia OX=5124...	[more]
tr\|A0A2P5EYH8\|A0A2P5EYH8_9ROSA	4.2e-57	84.09	Zinc finger, SWIM-type OS=Trema orientalis OX=63057 GN=TorRG33x02_136390 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR007527	Znf_SWIM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0044212	transcription regulatory region DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G000500.1	CsaV3_4G000500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR28498	FAMILY NOT NAMED	coord: 5..130
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 62..111 score: 8.16

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G000500	CSPI04G00550	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G000500	Cucsa.097380	Cucumber (Gy14) v1	cgycucB102
CsaV3_4G000500	CmaCh04G004610	Cucurbita maxima (Rimu)	cmacucB0843
CsaV3_4G000500	CmoCh04G004930	Cucurbita moschata (Rifu)	cmocucB0829
CsaV3_4G000500	Cp4.1LG01g02610	Cucurbita pepo (Zucchini)	cpecucB0499
CsaV3_4G000500	CsGy4G000480	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G000500	Carg08132	Silver-seed gourd	carcucB0406
CsaV3_4G000500	Cla006408	Watermelon (97103) v1	cucwmB300
CsaV3_4G000500	ClCG10G010580	Watermelon (Charleston Gray)	cucwcgB279
CsaV3_4G000500	Cla97C10G193510	Watermelon (97103) v2	cucwmbB273

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G000500	Cucumber (Chinese Long) v3	cuccucB165
CsaV3_4G000500	Silver-seed gourd	carcucB0328
CsaV3_4G000500	Cucumber (Gy14) v2	cgybcucB178
CsaV3_4G000500	Cucumber (Gy14) v2	cgybcucB338
CsaV3_4G000500	Cucumber (Gy14) v1	cgycucB339
CsaV3_4G000500	Cucumber (Gy14) v1	cgycucB537
CsaV3_4G000500	Cucurbita maxima (Rimu)	cmacucB0388
CsaV3_4G000500	Cucurbita moschata (Rifu)	cmocucB0385
CsaV3_4G000500	Cucurbita pepo (Zucchini)	cpecucB0263
CsaV3_4G000500	Wild cucumber (PI 183967)	cpicucB227
CsaV3_4G000500	Wild cucumber (PI 183967)	cpicucB404
CsaV3_4G000500	Bottle gourd (USVL1VR-Ls)	cuclsiB296
CsaV3_4G000500	Melon (DHL92) v3.5.1	cucmeB282
CsaV3_4G000500	Melon (DHL92) v3.5.1	cucmeB314
CsaV3_4G000500	Melon (DHL92) v3.5.1	cucmeB315
CsaV3_4G000500	Melon (DHL92) v3.5.1	cucmeB345
CsaV3_4G000500	Melon (DHL92) v3.6.1	cucmedB275
CsaV3_4G000500	Melon (DHL92) v3.6.1	cucmedB306
CsaV3_4G000500	Melon (DHL92) v3.6.1	cucmedB307
CsaV3_4G000500	Watermelon (Charleston Gray)	cucwcgB308
CsaV3_4G000500	Wax gourd	cucwgoB360