CSPI04G00520 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G00520
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionProlyl 4-hydroxylase subunit alpha-1
LocationChr4 : 266063 .. 266455 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGAGGCAATGGTCAGAAGGCTAAGATGGCTCGTGAGAGAAACTTGGAGAAACAAAAAGGCGCCAAGGGTACTTTTTTCTTTATCCACCCCTTTTTTCTTCGTTTCACTAAACTTCTATTGCCCCCCTCGTTTACCCTTTTGAATTCTTCTCTTTTTCGTTGTTGATCTGATGTTTTGCAGGAAGCCAGCTTGATTCCAACAAAAAAGCTATGACTATTCAGGTACTTTCGTTGATTCCAGTGCTTATTGTTCTTTTCCCTTTTCTTTTCGTTTTCGGAATTGGATTGTCCACTTGATCTACTTCAATTTTATCCCTCATTGGGTTGTGACAGATAAAGGGTTTATACATAATAGTAATGGAAATTGACCCGCTAGCTCGTTTGATTT

mRNA sequence

ATGGGAGGAGGCAATGGTCAGAAGGCTAAGATGGCTCGTGAGAGAAACTTGGAGAAACAAAAAGGCGCCAAGGGAAGCCAGCTTGATTCCAACAAAAAAGCTATGACTATTCAGGTACTTTCGTTGATTCCAGTGCTTATTGTTCTTTTCCCTTTTCTTTTCGTTTTCGGAATTGGATTGTCCACTTGA

Coding sequence (CDS)

ATGGGAGGAGGCAATGGTCAGAAGGCTAAGATGGCTCGTGAGAGAAACTTGGAGAAACAAAAAGGCGCCAAGGGAAGCCAGCTTGATTCCAACAAAAAAGCTATGACTATTCAGGTACTTTCGTTGATTCCAGTGCTTATTGTTCTTTTCCCTTTTCTTTTCGTTTTCGGAATTGGATTGTCCACTTGA
Homology
[Close]
BLAST of CSPI04G00520 vs. TrEMBL
Match: A0A0A0KV37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000980 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 38

[Close]
BLAST of CSPI04G00520 vs. TrEMBL
Match: A0A067KZL2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16048 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARERN+EKQK A+GSQLDSNKKAMTIQ
Sbjct: 1  MGGGNGQKAKMARERNMEKQKAARGSQLDSNKKAMTIQ 38

[Close]
BLAST of CSPI04G00520 vs. TrEMBL
Match: B4UWA0_ARAHY (Putative uncharacterized protein OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARE+NLEKQK AKGSQLDSNKKAM+IQ
Sbjct: 1  MGGGNGQKAKMAREKNLEKQKAAKGSQLDSNKKAMSIQ 38

[Close]
BLAST of CSPI04G00520 vs. TrEMBL
Match: M1AZU0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401013013 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.3e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARERNLEK KGAKGSQLD+NKKAM IQ
Sbjct: 1  MGGGNGQKAKMARERNLEKLKGAKGSQLDTNKKAMNIQ 38

[Close]
BLAST of CSPI04G00520 vs. TrEMBL
Match: K4B6Q9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.3e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARERNLEK KGAKGSQLD+NKKAM IQ
Sbjct: 1  MGGGNGQKAKMARERNLEKLKGAKGSQLDTNKKAMNIQ 38

[Close]
BLAST of CSPI04G00520 vs. TAIR10
Match: AT2G23090.1 (AT2G23090.1 Uncharacterised protein family SERF)

HSP 1 Score: 50.1 bits (118), Expect = 6.0e-07
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 

Query: 1  MGGGNGQKAKMARERNLEKQKGA-KGSQLDSNKKAMTIQ 39
          MGGGN QK+ MAR +NLEK K A KGSQL++NKKAM+IQ
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQ 39

[Close]
BLAST of CSPI04G00520 vs. NCBI nr
Match: gi|449469126|ref|XP_004152272.1| (PREDICTED: uncharacterized protein At2g23090 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 38

[Close]
BLAST of CSPI04G00520 vs. NCBI nr
Match: gi|802570652|ref|XP_012068249.1| (PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas])

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARERN+EKQK A+GSQLDSNKKAMTIQ
Sbjct: 1  MGGGNGQKAKMARERNMEKQKAARGSQLDSNKKAMTIQ 38

[Close]
BLAST of CSPI04G00520 vs. NCBI nr
Match: gi|1012126788|ref|XP_015963855.1| (PREDICTED: uncharacterized protein At2g23090 [Arachis duranensis])

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARE+NLEKQK AKGSQLDSNKKAM+IQ
Sbjct: 1  MGGGNGQKAKMAREKNLEKQKAAKGSQLDSNKKAMSIQ 38

[Close]
BLAST of CSPI04G00520 vs. NCBI nr
Match: gi|460375315|ref|XP_004233452.1| (PREDICTED: uncharacterized protein At2g23090-like [Solanum lycopersicum])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARERNLEK KGAKGSQLD+NKKAM IQ
Sbjct: 1  MGGGNGQKAKMARERNLEKLKGAKGSQLDTNKKAMNIQ 38

[Close]
BLAST of CSPI04G00520 vs. NCBI nr
Match: gi|743858121|ref|XP_011030366.1| (PREDICTED: somatic embryogenesis receptor kinase 1-like [Populus euphratica])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 

Query: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQK+KMARERN+EKQK AKGSQL+SNKKAMTIQ
Sbjct: 1  MGGGNGQKSKMARERNIEKQKAAKGSQLESNKKAMTIQ 38

The following BLAST results are available for this feature:
BLAST of CSPI04G00520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G00520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV37_CUCSA1.7e-10100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000980 PE=4 SV=1[more]
A0A067KZL2_JATCU3.2e-0992.11Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16048 PE=4 SV=1[more]
B4UWA0_ARAHY5.5e-0992.11Putative uncharacterized protein OS=Arachis hypogaea PE=2 SV=1[more]
M1AZU0_SOLTU9.3e-0992.11Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401013013 PE=4 SV=1[more]
K4B6Q9_SOLLC9.3e-0992.11Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of CSPI04G00520 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G23090.16.0e-0771.79 Uncharacterised protein family SERF[more]
BLAST of CSPI04G00520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449469126|ref|XP_004152272.1|2.4e-10100.00PREDICTED: uncharacterized protein At2g23090 [Cucumis sativus][more]
gi|802570652|ref|XP_012068249.1|4.6e-0992.11PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas][more]
gi|1012126788|ref|XP_015963855.1|7.8e-0992.11PREDICTED: uncharacterized protein At2g23090 [Arachis duranensis][more]
gi|460375315|ref|XP_004233452.1|1.3e-0892.11PREDICTED: uncharacterized protein At2g23090-like [Solanum lycopersicum][more]
gi|743858121|ref|XP_011030366.1|1.3e-0889.47PREDICTED: somatic embryogenesis receptor kinase 1-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007513Uncharacterised_SERF
IPR026939At2g23090-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0007165 signal transduction
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0019199 transmembrane receptor protein kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G00520.1CSPI04G00520.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007513Uncharacterised protein family SERFPFAMPF044194F5coord: 3..35
score: 2.
IPR026939At2g23090-likeGENE3DG3DSA:4.10.1050.10coord: 1..38
score: 1.0
IPR026939At2g23090-likeunknownSSF118359Expressed protein At2g23090/F21P24.15coord: 1..39
score: 5.36
NoneNo IPR availablePANTHERPTHR33788FAMILY NOT NAMEDcoord: 2..47
score: 9.5
NoneNo IPR availablePANTHERPTHR33788:SF3SUBFAMILY NOT NAMEDcoord: 2..47
score: 9.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G00520Cla006411Watermelon (97103) v1cpiwmB291
CSPI04G00520Csa4G642360Cucumber (Chinese Long) v2cpicuB188
CSPI04G00520Csa4G000980Cucumber (Chinese Long) v2cpicuB182
CSPI04G00520MELO3C016805Melon (DHL92) v3.5.1cpimeB309
CSPI04G00520ClCG10G010550Watermelon (Charleston Gray)cpiwcgB280
CSPI04G00520MELO3C017988.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G00520CsaV3_4G000470Cucumber (Chinese Long) v3cpicucB213
CSPI04G00520CsaV3_4G034900Cucumber (Chinese Long) v3cpicucB224
CSPI04G00520Cla97C10G193480Watermelon (97103) v2cpiwmbB278
CSPI04G00520Cucsa.097410Cucumber (Gy14) v1cgycpiB103
CSPI04G00520CmaCh04G004600Cucurbita maxima (Rimu)cmacpiB715
CSPI04G00520CmaCh16G003290Cucurbita maxima (Rimu)cmacpiB338
CSPI04G00520CmoCh04G004910Cucurbita moschata (Rifu)cmocpiB709
CSPI04G00520CmoCh16G003480Cucurbita moschata (Rifu)cmocpiB329
CSPI04G00520Cp4.1LG01g02540Cucurbita pepo (Zucchini)cpecpiB399
CSPI04G00520Cp4.1LG14g04340Cucurbita pepo (Zucchini)cpecpiB221
CSPI04G00520CsGy4G022920Cucumber (Gy14) v2cgybcpiB179
CSPI04G00520CsGy4G000450Cucumber (Gy14) v2cgybcpiB168
CSPI04G00520Carg08130Silver-seed gourdcarcpiB0407
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CSPI04G00520CSPI04G24660Wild cucumber (PI 183967)cpicpiB151
The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G00520Bottle gourd (USVL1VR-Ls)cpilsiB274
CSPI04G00520Silver-seed gourdcarcpiB0328
CSPI04G00520Wax gourdcpiwgoB358
CSPI04G00520Wild cucumber (PI 183967)cpicpiB169
CSPI04G00520Cucumber (Gy14) v1cgycpiB522
CSPI04G00520Cucumber (Chinese Long) v2cpicuB207
CSPI04G00520Melon (DHL92) v3.5.1cpimeB276
CSPI04G00520Melon (DHL92) v3.5.1cpimeB310