Cp4.1LG01g02540 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g02540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Leucine-rich repeat family protein
Location	Cp4.1LG01 : 2375069 .. 2378208 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAAAAGTTAAAAAAAAAAAAAAAAAAAAACTTTTGTCGTATTCGATTCATGCTGAGTGCATTCCGCGTTACCAGTGGAAAAAAACTTTTTTGGCGGTCTCCTCTGTTTCCTTTCAACGCAGAAGCGATCGATTCCGCCATGGGAGGAGGCAACGGGCAGAAGGCCAAGATGGCTCGCGAGAAAAACTTGGAGAAACAAAAAGGCGCCAAGGGTACTTTCTCTTCACTAACTTCTTTTGCCTCCTCAATCCCTCGCTTTTCCCAATTTTCGCGATCTTTATTTAGGGTTTATTAAATCTTGATCTCGCTGTTGATCCGATCCTGTGCAGGAAGCCAGCTTGATTCCAACAAGAAAGCTATGACTATTCAGGTAACTCTCATTGATTGTAGTGCTTACTCCTCTTTTCTTTTGTTCTTGGGTTTCGATTATGCACTTGATCTGTTCACTTTTTACCGCAATTCTGTTCTTGAATGAGCTGTGAATGAGAAAAGAGTTTGATCGTAATAGTTTCCGTGATTGAACCTTAAGTTCATTTGATTTCGGCGTCTTATTAGTCTTAGGCATGGAAACTAACAGTATCTTTTACCCCAAGGAAACAATAAACTATTTTGGAGCTGCTACTACAAATTTTCCAACCTCGAACCCGAGGAGATTACATATCTCGTTTCAATTAAGCCGAAACATTGTTAATATCTCGTTTCAATTAAGCCGAAACATTGTTAATACTGTCATTGTTAAGAAAAGAAGAGGTTTACACTATGAGAGAGCCATAAAGGACAATTAGGTCTATAAACCAATCTACAATTCAACCTTTTCCCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTTTTGCGTGTACCGATTTCCAAGGTTTAGATTAGGACCCCACTACTTGTCGTATTTGGTTTGGTATTGGGCCTGTAGCTCAGAGGATTAAAAAAAATTTCAATAACTTGTTGATCCCTATCCTTCTCTTCCCCATATTTCAAAATTTATCGTTTTTGAATTTCTTGGCTTAGTGTGAGATCGAAATATAGTTGGGCTCAGGGACTGCAGTCAGCCGTTTTCCCTGTAATCATCAGCTCGTTCTTGATAGATTCGATCGGGTGTTCATAATCTGAAGTAAAAGTGACTCCCTTGGTTGTCATGTTTACAGACTACAGTTACAGGTTTATTCTAAGAACCTTGGAGTGTGGATATATAGGAAAACTTACCATGTATCTTATATTCATATTCCTTTTCTCTCAACTGGTGGCAGCTTTATACACGTCGTCCTTGTGTTCTCATCAGCATTTTACAAGGCTCAATTCAACCGTATAGCATCTGGAAGTATAGACCAATAAACTCAGTGCGCCTGTCATCACCGAGTGTATTATTGGGTTCTGAGTTTTATGAACCTAGTGTCCGTGTAATAGCCGAAACCCACCGCTAACATATATTGTCATCTTTGAGTTTTTCCTTTCGGGCTCCCCCTCAAGGTTTTAAAACACGTCTACCATGGAGAAGTTCCCACACTCTTATAAGGAATGCTTTGTTCCCTTCTCCAACCGATGTGGGATGATCTCATAGTCAATGTTTCCACAACAAGTACCATATCTAAAATATTTTAGTGATACCTTGATTTTTTGGTCATTAATGGTGTTATTAGGCTGGAATTCTACATTCTTTAATCATTAAGGAAGTATTTAAAAACTTTTAACACATTTCAGGAGAGAGTCGAACATTATACTTCTAATCAAATTTAACCATGGATCAGAAGCCTTATATTCTTTTTTGTATGCTGATTATGAATTACACTAGACAGATACTATAAAGGTCTTGGATATCAGTTTGTATCTATCCTGGCTACTTACAGGAAAACGATATAGAAACTATATGTTGGCCATAGGATCTATGAAAGATTGTTGGTCTCTCTCTGACTCTCCCTCTCTCTTGTTCCTAAATCTATGATATTATGATGAAAGTTACCTAGATCTTTGACTCTGAATGTTGGATCTCTCTTTTTGTGCAAGAAGTAGTTCAATCTTGAACCATGTACTAAGTTTTATTGATGGCATGATTCTATATTTCACCATTTAGAGAAATGGAAACTTAATAAACTTATGTTCATCAGTCTAAGAAACAAAAACATTAACATGCATACACCTTAGTTTTTCAAAAAGTAAAAAAAAGAGAGACAAGCATGTCAAGGAGAATCCATAAAAAATACATTATGGTCCAACGTTGTCAGACAAAAAATATCGTATAATGTAAGAATTAGATTGTGCATACTTGTCTTTTCAATGCAATTCATCATCCTTTCCGCGGAGGTAAATCTAGGATAGCAAGCAGTAGGAGTTAGAATTCCCAACGTGATACATTCTTGAAGAGCCCGATATTCTTCTTGTTGATCAATGATTATTACACTTATAGGGGCCTTTTTGAACGAATATATGTCTATGGAAAAATCAAATCTATATCACTGAACGGTCATTTAGGAGCTTTAGCTGGTGATCCGGAAGACCACTGGCTTATATATAGATTTAGTAGATTGGTTATTGTTGTGAAGAATGATGAATGAACTGATATTTGGATGTTGCAGTGCAAGGTATGCATGCAGACATTCATGTGCACGACCTCAGAGGTGAAATGTAGGGAGCATGCTGAAGCAAAACACCCAAAATCTGATGTTTTCGCCTGCTTCCCCCATCTTCAAAAGTGAAAAATTCTACATCAAACTGCATTACTCAATGTGGGTGTTTATATATAGAACATAATTTATGAAATTTGTAGTTAAGAGTGTTGGTTCTGATCTCTGCTCATACAACTGTGACTTTCTTTAGCTCTGCTGCAATGTTCTACCTGTTTAGTCTCTGTATGCCCCTCTTAACCTTTGAAAGCTCTATCAATCAAGTGGTGCAATGTGAATGATTAGGTCTGTTTGGTTGGATCCTTTGCTATTACACATAACCCATCTCTTAGGATAAATAATTTGAGTTGCTTTCGTTTTGTTTTCAACATATTCAGATAGATCGTTTTTTAGTTCAACAATTATAGAGCTAGAGGTCAAATTCTTTGATACCTTGGAAACGACAATGGATATATTGTTTACTACAATATAAGTATGTTCGA

mRNA sequence

ATTAAAAAGTTAAAAAAAAAAAAAAAAAAAAACTTTTGTCGTATTCGATTCATGCTGAGTGCATTCCGCGTTACCAGTGGAAAAAAACTTTTTTGGCGGTCTCCTCTGTTTCCTTTCAACGCAGAAGCGATCGATTCCGCCATGGGAGGAGGCAACGGGCAGAAGGCCAAGATGGCTCGCGAGAAAAACTTGGAGAAACAAAAAGGCGCCAAGGGAAGCCAGCTTGATTCCAACAAGAAAGCTATGACTATTCAGTGCAAGGTATGCATGCAGACATTCATGTGCACGACCTCAGAGGTGAAATGTAGGGAGCATGCTGAAGCAAAACACCCAAAATCTGATGTTTTCGCCTGCTTCCCCCATCTTCAAAAGTGAAAAATTCTACATCAAACTGCATTACTCAATGTGGGTGTTTATATATAGAACATAATTTATGAAATTTGTAGTTAAGAGTGTTGGTTCTGATCTCTGCTCATACAACTGTGACTTTCTTTAGCTCTGCTGCAATGTTCTACCTGTTTAGTCTCTGTATGCCCCTCTTAACCTTTGAAAGCTCTATCAATCAAGTGGTGCAATGTGAATGATTAGGTCTGTTTGGTTGGATCCTTTGCTATTACACATAACCCATCTCTTAGGATAAATAATTTGAGTTGCTTTCGTTTTGTTTTCAACATATTCAGATAGATCGTTTTTTAGTTCAACAATTATAGAGCTAGAGGTCAAATTCTTTGATACCTTGGAAACGACAATGGATATATTGTTTACTACAATATAAGTATGTTCGA

Coding sequence (CDS)

ATGCTGAGTGCATTCCGCGTTACCAGTGGAAAAAAACTTTTTTGGCGGTCTCCTCTGTTTCCTTTCAACGCAGAAGCGATCGATTCCGCCATGGGAGGAGGCAACGGGCAGAAGGCCAAGATGGCTCGCGAGAAAAACTTGGAGAAACAAAAAGGCGCCAAGGGAAGCCAGCTTGATTCCAACAAGAAAGCTATGACTATTCAGTGCAAGGTATGCATGCAGACATTCATGTGCACGACCTCAGAGGTGAAATGTAGGGAGCATGCTGAAGCAAAACACCCAAAATCTGATGTTTTCGCCTGCTTCCCCCATCTTCAAAAGTGA

Protein sequence

MLSAFRVTSGKKLFWRSPLFPFNAEAIDSAMGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAEAKHPKSDVFACFPHLQK

Homology

[Close]

BLAST of Cp4.1LG01g02540 vs. Swiss-Prot
Match: Y2309_ARATH (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-29
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 31  MGGGNGQKAKMAREKNLEKQKGA-KGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHA 90
           MGGGN QK+ MAR KNLEK K A KGSQL++NKKAM+IQCKVCMQTF+CTTSEVKCREHA
Sbjct: 1   MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 91  EAKHPKSDVFACFPHLQK 108
           EAKHPK+DV ACFPHL+K
Sbjct: 61  EAKHPKADVVACFPHLKK 78

[Close]

BLAST of Cp4.1LG01g02540 vs. TrEMBL
Match: A0A0A0KV37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000980 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.4e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1


Query: 31  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 90
           MGGGNGQKAKMARE+NLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60

Query: 91  AKHPKSDVFACFPHLQK 108
           AKHPKSDVF CFPHLQK
Sbjct: 61  AKHPKSDVFTCFPHLQK 77

[Close]

BLAST of Cp4.1LG01g02540 vs. TrEMBL
Match: A0A059B0J5_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H02281 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.2e-33
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 27  IDSAMGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCR 86
           I S MGGGNGQKAKMAREKNLEK KG+KGSQL+SNKKAM IQCK+CMQTFMCTTSEVKCR
Sbjct: 66  IASRMGGGNGQKAKMAREKNLEKSKGSKGSQLESNKKAMNIQCKICMQTFMCTTSEVKCR 125

Query: 87  EHAEAKHPKSDVFACFPHLQK 108
           EHAEAKHPKSDV ACFPHL+K
Sbjct: 126 EHAEAKHPKSDVTACFPHLKK 146

[Close]

BLAST of Cp4.1LG01g02540 vs. TrEMBL
Match: B4UWA0_ARAHY (Putative uncharacterized protein OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.4e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 31  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 90
           MGGGNGQKAKMAREKNLEKQK AKGSQLDSNKKAM+IQCKVCMQTFMCTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNLEKQKAAKGSQLDSNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 60

Query: 91  AKHPKSDVFACFPHLQ 107
           AKHPKSDV+ CFPHL+
Sbjct: 61  AKHPKSDVYVCFPHLK 76

[Close]

BLAST of Cp4.1LG01g02540 vs. TrEMBL
Match: K7K4P7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G192000 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 31  MGGGNGQKAKMAREKNLEKQKGA-KGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHA 90
           MGGGNGQKAKMAREKNLEKQK A KGSQLDSNKKAM+IQCKVCMQTFMCTTSEVKCREHA
Sbjct: 1   MGGGNGQKAKMAREKNLEKQKAASKGSQLDSNKKAMSIQCKVCMQTFMCTTSEVKCREHA 60

Query: 91  EAKHPKSDVFACFPHLQK 108
           EAKHPKSDV+ACFPHL+K
Sbjct: 61  EAKHPKSDVYACFPHLKK 78

[Close]

BLAST of Cp4.1LG01g02540 vs. TrEMBL
Match: A0A0B2RP87_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_003404 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 31  MGGGNGQKAKMAREKNLEKQKGA-KGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHA 90
           MGGGNGQKAKMAREKNLEKQK A KGSQLDSNKKAM+IQCKVCMQTFMCTTSEVKCREHA
Sbjct: 1   MGGGNGQKAKMAREKNLEKQKAASKGSQLDSNKKAMSIQCKVCMQTFMCTTSEVKCREHA 60

Query: 91  EAKHPKSDVFACFPHLQK 108
           EAKHPKSDV+ACFPHL+K
Sbjct: 61  EAKHPKSDVYACFPHLKK 78

[Close]

BLAST of Cp4.1LG01g02540 vs. TAIR10
Match: AT2G23090.1 (AT2G23090.1 Uncharacterised protein family SERF)

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-30
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 31  MGGGNGQKAKMAREKNLEKQKGA-KGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHA 90
           MGGGN QK+ MAR KNLEK K A KGSQL++NKKAM+IQCKVCMQTF+CTTSEVKCREHA
Sbjct: 1   MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 91  EAKHPKSDVFACFPHLQK 108
           EAKHPK+DV ACFPHL+K
Sbjct: 61  EAKHPKADVVACFPHLKK 78

[Close]

BLAST of Cp4.1LG01g02540 vs. NCBI nr
Match: gi|449469126|ref|XP_004152272.1| (PREDICTED: uncharacterized protein At2g23090 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 4.8e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1


Query: 31  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 90
           MGGGNGQKAKMARE+NLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 60

Query: 91  AKHPKSDVFACFPHLQK 108
           AKHPKSDVF CFPHLQK
Sbjct: 61  AKHPKSDVFTCFPHLQK 77

[Close]

BLAST of Cp4.1LG01g02540 vs. NCBI nr
Match: gi|629093534|gb|KCW59529.1| (hypothetical protein EUGRSUZ_H02281, partial [Eucalyptus grandis])

HSP 1 Score: 149.1 bits (375), Expect = 4.5e-33
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 27  IDSAMGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCR 86
           I S MGGGNGQKAKMAREKNLEK KG+KGSQL+SNKKAM IQCK+CMQTFMCTTSEVKCR
Sbjct: 66  IASRMGGGNGQKAKMAREKNLEKSKGSKGSQLESNKKAMNIQCKICMQTFMCTTSEVKCR 125

Query: 87  EHAEAKHPKSDVFACFPHLQK 108
           EHAEAKHPKSDV ACFPHL+K
Sbjct: 126 EHAEAKHPKSDVTACFPHLKK 146

[Close]

BLAST of Cp4.1LG01g02540 vs. NCBI nr
Match: gi|1012126788|ref|XP_015963855.1| (PREDICTED: uncharacterized protein At2g23090 [Arachis duranensis])

HSP 1 Score: 148.3 bits (373), Expect = 7.7e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 31  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 90
           MGGGNGQKAKMAREKNLEKQK AKGSQLDSNKKAM+IQCKVCMQTFMCTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNLEKQKAAKGSQLDSNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 60

Query: 91  AKHPKSDVFACFPHLQ 107
           AKHPKSDV+ CFPHL+
Sbjct: 61  AKHPKSDVYVCFPHLK 76

[Close]

BLAST of Cp4.1LG01g02540 vs. NCBI nr
Match: gi|356496961|ref|XP_003517333.1| (PREDICTED: uncharacterized protein At2g23090 [Glycine max])

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-32
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 31  MGGGNGQKAKMAREKNLEKQKGA-KGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHA 90
           MGGGNGQKAKMAREKNLEKQK A KGSQLDSNKKAM+IQCKVCMQTFMCTTSEVKCREHA
Sbjct: 1   MGGGNGQKAKMAREKNLEKQKAASKGSQLDSNKKAMSIQCKVCMQTFMCTTSEVKCREHA 60

Query: 91  EAKHPKSDVFACFPHLQK 108
           EAKHPKSDV+ACFPHL+K
Sbjct: 61  EAKHPKSDVYACFPHLKK 78

[Close]

BLAST of Cp4.1LG01g02540 vs. NCBI nr
Match: gi|702439229|ref|XP_010070636.1| (PREDICTED: uncharacterized protein At2g23090-like [Eucalyptus grandis])

HSP 1 Score: 146.7 bits (369), Expect = 2.3e-32
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 31  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQCKVCMQTFMCTTSEVKCREHAE 90
           MGGGNGQKAKMAREKNLEK KG+KGSQL+SNKKAM IQCK+CMQTFMCTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNLEKSKGSKGSQLESNKKAMNIQCKICMQTFMCTTSEVKCREHAE 60

Query: 91  AKHPKSDVFACFPHLQK 108
           AKHPKSDV ACFPHL+K
Sbjct: 61  AKHPKSDVTACFPHLKK 77

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g02540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y2309_ARATH	1.8e-29	82.05	Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g02540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV37_CUCSA	3.4e-35	97.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000980 PE=4 SV=1	[more]
A0A059B0J5_EUCGR	3.2e-33	88.89	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H02281 PE=4 ...	[more]
B4UWA0_ARAHY	5.4e-33	93.42	Putative uncharacterized protein OS=Arachis hypogaea PE=2 SV=1	[more]
K7K4P7_SOYBN	1.2e-32	93.59	Uncharacterized protein OS=Glycine max GN=GLYMA_01G192000 PE=4 SV=1	[more]
A0A0B2RP87_GLYSO	1.2e-32	93.59	Uncharacterized protein OS=Glycine soja GN=glysoja_003404 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g02540 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23090.1	1.0e-30	82.05	Uncharacterised protein family SERF	[more]

BLAST of Cp4.1LG01g02540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469126\|ref\|XP_004152272.1\|	4.8e-35	97.40	PREDICTED: uncharacterized protein At2g23090 [Cucumis sativus]	[more]
gi\|629093534\|gb\|KCW59529.1\|	4.5e-33	88.89	hypothetical protein EUGRSUZ_H02281, partial [Eucalyptus grandis]	[more]
gi\|1012126788\|ref\|XP_015963855.1\|	7.7e-33	93.42	PREDICTED: uncharacterized protein At2g23090 [Arachis duranensis]	[more]
gi\|356496961\|ref\|XP_003517333.1\|	1.7e-32	93.59	PREDICTED: uncharacterized protein At2g23090 [Glycine max]	[more]
gi\|702439229\|ref\|XP_010070636.1\|	2.3e-32	90.91	PREDICTED: uncharacterized protein At2g23090-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026939	At2g23090-like
IPR007513	Uncharacterised_SERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0007165	signal transduction
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0019199	transmembrane receptor protein kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g02540.1	Cp4.1LG01g02540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 33..65 score: 1.
IPR026939	At2g23090-like	GENE3D	G3DSA:4.10.1050.10		coord: 31..105 score: 3.8
IPR026939	At2g23090-like	unknown	SSF118359	Expressed protein At2g23090/F21P24.15	coord: 28..106 score: 5.23
None	No IPR available	PANTHER	PTHR33788	FAMILY NOT NAMED	coord: 32..106 score: 2.9
None	No IPR available	PANTHER	PTHR33788:SF2	SUBFAMILY NOT NAMED	coord: 32..106 score: 2.9
None	No IPR available	PFAM	PF12907	zf-met2	coord: 68..105 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g02540	Cucsa.097410	Cucumber (Gy14) v1	cgycpeB0192
Cp4.1LG01g02540	Cucsa.102990	Cucumber (Gy14) v1	cgycpeB0218
Cp4.1LG01g02540	CmaCh04G004600	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g02540	CmaCh16G003290	Cucurbita maxima (Rimu)	cmacpeB351
Cp4.1LG01g02540	CmoCh04G004910	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g02540	CmoCh16G003480	Cucurbita moschata (Rifu)	cmocpeB311
Cp4.1LG01g02540	CmoCh07G006730	Cucurbita moschata (Rifu)	cmocpeB815
Cp4.1LG01g02540	Cla006411	Watermelon (97103) v1	cpewmB382
Cp4.1LG01g02540	Csa4G000980	Cucumber (Chinese Long) v2	cpecuB402
Cp4.1LG01g02540	Csa6G494960	Cucumber (Chinese Long) v2	cpecuB468
Cp4.1LG01g02540	MELO3C017988	Melon (DHL92) v3.5.1	cpemeB422
Cp4.1LG01g02540	MELO3C007614	Melon (DHL92) v3.5.1	cpemeB435
Cp4.1LG01g02540	ClCG10G010550	Watermelon (Charleston Gray)	cpewcgB345
Cp4.1LG01g02540	CSPI04G00520	Wild cucumber (PI 183967)	cpecpiB399
Cp4.1LG01g02540	Lsi01G009150	Bottle gourd (USVL1VR-Ls)	cpelsiB325
Cp4.1LG01g02540	MELO3C007614.2	Melon (DHL92) v3.6.1	cpemedB507
Cp4.1LG01g02540	MELO3C032314.2	Melon (DHL92) v3.6.1	cpemedB492
Cp4.1LG01g02540	MELO3C017988.2	Melon (DHL92) v3.6.1	cpemedB494
Cp4.1LG01g02540	CsaV3_4G000470	Cucumber (Chinese Long) v3	cpecucB0499
Cp4.1LG01g02540	CsaV3_4G034900	Cucumber (Chinese Long) v3	cpecucB0511
Cp4.1LG01g02540	CsaV3_6G043890	Cucumber (Chinese Long) v3	cpecucB0576
Cp4.1LG01g02540	Bhi09G002676	Wax gourd	cpewgoB0580
Cp4.1LG01g02540	Bhi03G000769	Wax gourd	cpewgoB0547
Cp4.1LG01g02540	CsGy6G028180	Cucumber (Gy14) v2	cgybcpeB805
Cp4.1LG01g02540	CsGy4G022920	Cucumber (Gy14) v2	cgybcpeB515
Cp4.1LG01g02540	CsGy4G000450	Cucumber (Gy14) v2	cgybcpeB504
Cp4.1LG01g02540	Carg08130	Silver-seed gourd	carcpeB0527

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g02540	Cp4.1LG14g04340	Cucurbita pepo (Zucchini)	cpecpeB234

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g02540	Cucumber (Chinese Long) v3	cpecucB0481
Cp4.1LG01g02540	Cucumber (Chinese Long) v3	cpecucB0582
Cp4.1LG01g02540	Wax gourd	cpewgoB0477
Cp4.1LG01g02540	Wax gourd	cpewgoB0539
Cp4.1LG01g02540	Cucurbita pepo (Zucchini)	cpecpeB400
Cp4.1LG01g02540	Cucumber (Gy14) v1	cgycpeB0599
Cp4.1LG01g02540	Cucurbita maxima (Rimu)	cmacpeB136
Cp4.1LG01g02540	Cucurbita moschata (Rifu)	cmocpeB114
Cp4.1LG01g02540	Wild cucumber (PI 183967)	cpecpiB470
Cp4.1LG01g02540	Cucumber (Chinese Long) v2	cpecuB470
Cp4.1LG01g02540	Bottle gourd (USVL1VR-Ls)	cpelsiB340
Cp4.1LG01g02540	Bottle gourd (USVL1VR-Ls)	cpelsiB348
Cp4.1LG01g02540	Watermelon (Charleston Gray)	cpewcgB378
Cp4.1LG01g02540	Watermelon (97103) v1	cpewmB453
Cp4.1LG01g02540	Melon (DHL92) v3.5.1	cpemeB394
Cp4.1LG01g02540	Cucumber (Gy14) v2	cgybcpeB213
Cp4.1LG01g02540	Melon (DHL92) v3.6.1	cpemedB457
Cp4.1LG01g02540	Melon (DHL92) v3.6.1	cpemedB472
Cp4.1LG01g02540	Silver-seed gourd	carcpeB0408