Carg08130 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08130
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	4F5 domain-containing protein/zf-met2 domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_050 : 887352 .. 888802 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTTTATCGTATTCGATTCATGTTCTGAGTGCATTCCGCGTTACCAGTGGAAAAGAACTTTTTTGGCGGTCTCCTCTGTTTCCTTTCAACGCAGAAGCGATCGATTCCGCCATGGGAGGAGGCAACGGGCAGAAGGCCAAGATGGCTCGCGAGAAAAACTTGGAGAAACAAAAAGGCGCCAAGGGTACTTTCTCTTCACTAACTTCTTTTGCCTTCTCAATCCCTCGCTTTTCCCAATTTTCGTGATCTTTATTTAGGGTTTATTAAATCTTGATCTCGCTGTTGATCCGATCCTGTGCAGGAAGCCAGCTTGATTCCAACAAGAAAGCTATGACTATTCAGGTAACTCTCATTGATTGTAGTGCTTACTCTTTTCTTTTGTTCTTGGGTTTCGATTATGCACTTGATCTGTTCACTTTGTACCGCAATTCTGTTCTTCAATGAGCTGTGAACGAGAAAAGGGTTTGATCGTAATAGTTTCCGTGATTGAACCCTAAGTTCATTTGATTTCGGCATCTTATTAGTCTTAGGCATGGAAACTAACAGTATCTTTTCCCCCAAGGAAACAATAAACTATTTTGGAGCTGCTACTACAAATTTTCCAACCTCGAACCCAAGGAGAGTACATAATCTTGTTTCAATTAAGCCAAAACACTGTTAGTACTGTCATTGTTAAAAAAAGAAGAGGTTTACACTACGAGAGAGCCATAAAGGACAATTAGTCTATAAACCAATCTACAATTCAACCTTTTCCCGATCAGAATCTGACCCATGAGAAATGGAGCAAAAGGCTGCCGCATTGGCCTATTTTTTTGCTGTGTACCGATTTCCAAGGTTTAGCTCAGGACCCACTACTCGTTGTATTTAGTTTACTATTGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGTTACGAACCACGACGAGAAAAACAATTTTCAAGAACTTGTTGATCCCTATCCTTCTCTTCCCCATATTTCAAAATTTATCGTTTTTGAATTTCTTGGCTTAGTGTGAGATCGAAATATAGTTGGGCTTAGGGACTGCAGTCAGCCGTTTTCCCTGTAATCGTCGGCTCGTTTTTGATAGATTTGATCGGGTGTTCATAATCTGAAGTAAAAGTGACTCCCTTGGTTGTCATGTTTACAGACTACAGTTACAGGGTTAACCTAAGAACCTTGGAGTGTGGATATATAGGAAAACTTACCATGTATCTTATATTCATATTCCTTTTCTCTCAACTGGTGGCAGCTTTATACACGTCGTCCTTGTGTTCTCATCACCTGAGCATTTTACAAGGCTCAATTCAACCGTATAGCATCTGGAAGTATAGACCAATAAACTCAGTGCGCCTGACATCAGCGAGTGCATTACTGGGTTCTGAGTTTTATGAACCTAGTGTTCGTGTAATAGCCGAAACCCACCGCTAACAAATATTGTCATCTTTGAGT

mRNA sequence

ACTTTTATCGTATTCGATTCATGTTCTGAGTGCATTCCGCGTTACCAGTGGAAAAGAACTTTTTTGGCGGTCTCCTCTGTTTCCTTTCAACGCAGAAGCGATCGATTCCGCCATGGGAGGAGGCAACGGGCAGAAGGCCAAGATGGCTCGCGAGAAAAACTTGGAGAAACAAAAAGGCGCCAAGGGAAGCCAGCTTGATTCCAACAAGAAAGCTATGACTATTCAGGTAACTCTCATTGATTGTAGTGCTTACTCTTTTCTTTTGTTCTTGGGTTTCGATTATGCACTTGATCTGTTCACTTTGTACCGCAATTCTGTTCTTCAATGAGCTGTGAACGAGAAAAGGGTTTGATCGTAATAGTTTCCGTGATTGAACCCTAAGTTCATTTGATTTCGGCATCTTATTAGTCTTAGGCATGGAAACTAACAGTATCTTTTCCCCCAAGGAAACAATAAACTATTTTGGAGCTGCTACTACAAATTTTCCAACCTCGAACCCAAGGAGAGTACATAATCTTGTTTCAATTAAGCCAAAACACTGTTAGTACTGTCATTGTTAAAAAAAGAAGAGGTTTACACTACGAGAGAGCCATAAAGGACAATTAGTCTATAAACCAATCTACAATTCAACCTTTTCCCGATCAGAATCTGACCCATGAGAAATGGAGCAAAAGGCTGCCGCATTGGCCTATTTTTTTGCTGTGTACCGATTTCCAAGGTTTAGCTCAGGACCCACTACTCGTTGTATTTAGTTTACTATTGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGTTACGAACCACGACGAGAAAAACAATTTTCAAGAACTTGTTGATCCCTATCCTTCTCTTCCCCATATTTCAAAATTTATCGTTTTTGAATTTCTTGGCTTAGTGTGAGATCGAAATATAGTTGGGCTTAGGGACTGCAGTCAGCCGTTTTCCCTGTAATCGTCGGCTCGTTTTTGATAGATTTGATCGGGTGTTCATAATCTGAAGTAAAAGTGACTCCCTTGGTTGTCATGTTTACAGACTACAGTTACAGGGTTAACCTAAGAACCTTGGAGTGTGGATATATAGGAAAACTTACCATGTATCTTATATTCATATTCCTTTTCTCTCAACTGGTGGCAGCTTTATACACGTCGTCCTTGTGTTCTCATCACCTGAGCATTTTACAAGGCTCAATTCAACCGTATAGCATCTGGAAGTATAGACCAATAAACTCAGTGCGCCTGACATCAGCGAGTGCATTACTGGGTTCTGAGTTTTATGAACCTAGTGTTCGTGTAATAGCCGAAACCCACCGCTAACAAATATTGTCATCTTTGAGT

Coding sequence (CDS)

ATGGGAGGAGGCAACGGGCAGAAGGCCAAGATGGCTCGCGAGAAAAACTTGGAGAAACAAAAAGGCGCCAAGGGAAGCCAGCTTGATTCCAACAAGAAAGCTATGACTATTCAGGTAACTCTCATTGATTGTAGTGCTTACTCTTTTCTTTTGTTCTTGGGTTTCGATTATGCACTTGATCTGTTCACTTTGTACCGCAATTCTGTTCTTCAATGA

Protein sequence

MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQVTLIDCSAYSFLLFLGFDYALDLFTLYRNSVLQ

Homology

[Close]

BLAST of Carg08130 vs. NCBI nr
Match: XP_022941597.1 (uncharacterized protein At2g23090-like [Cucurbita moschata])

HSP 1 Score: 72.4 bits (176), Expect = 7.0e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ
Sbjct: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 38

[Close]

BLAST of Carg08130 vs. NCBI nr
Match: XP_023524477.1 (uncharacterized protein At2g23090-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 7.0e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ
Sbjct: 31 MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 68

[Close]

BLAST of Carg08130 vs. NCBI nr
Match: XP_004152272.1 (PREDICTED: uncharacterized protein At2g23090 [Cucumis sativus] >XP_008454381.1 PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KGN52779.1 hypothetical protein Csa_4G000980 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARE+NLEKQKGAKGSQLDSNKKAMTIQ
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 38

[Close]

BLAST of Carg08130 vs. NCBI nr
Match: XP_022149288.1 (uncharacterized protein At2g23090-like [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARE+NLEKQKGAKGSQLDSNKKAMTIQ
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 38

[Close]

BLAST of Carg08130 vs. NCBI nr
Match: XP_022922955.1 (uncharacterized protein At2g23090-like [Cucurbita moschata] >XP_022984540.1 uncharacterized protein At2g23090-like [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARE+NLEKQKGAKGSQLDSNKKAMTIQ
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 38

[Close]

BLAST of Carg08130 vs. TAIR10
Match: AT2G23090.1 (Uncharacterised protein family SERF)

HSP 1 Score: 50.8 bits (120), Expect = 3.9e-07
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGA-KGSQLDSNKKAMTIQ 39
          MGGGN QK+ MAR KNLEK K A KGSQL++NKKAM+IQ
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQ 39

[Close]

BLAST of Carg08130 vs. Swiss-Prot
Match: sp|O64818|Y2309_ARATH (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.1e-06
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGA-KGSQLDSNKKAMTIQ 39
          MGGGN QK+ MAR KNLEK K A KGSQL++NKKAM+IQ
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQ 39

[Close]

BLAST of Carg08130 vs. TrEMBL
Match: tr|A0A2N9ITZ3|A0A2N9ITZ3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55737 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.6e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ
Sbjct: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 38

[Close]

BLAST of Carg08130 vs. TrEMBL
Match: tr|A0A1S3BZP7|A0A1S3BZP7_CUCME (uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103494797 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARE+NLEKQKGAKGSQLDSNKKAMTIQ
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 38

[Close]

BLAST of Carg08130 vs. TrEMBL
Match: tr|A0A0A0KV37|A0A0A0KV37_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000980 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMARE+NLEKQKGAKGSQLDSNKKAMTIQ
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQ 38

[Close]

BLAST of Carg08130 vs. TrEMBL
Match: tr|A0A2I4DKL5|A0A2I4DKL5_9ROSI (uncharacterized protein At2g23090-like OS=Juglans regia OX=51240 GN=LOC108981054 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAM+IQ
Sbjct: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMSIQ 38

[Close]

BLAST of Carg08130 vs. TrEMBL
Match: tr|A0A2I0ADN9|A0A2I0ADN9_9ASPA (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash009149 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-09
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNLEKQKGAKGSQLDSNKKAMTIQ 39
          MGGGNGQK+KMARE+NLEKQKGAKGSQLD+NKKAMTIQ
Sbjct: 1  MGGGNGQKSKMARERNLEKQKGAKGSQLDTNKKAMTIQ 38

The following BLAST results are available for this feature:

BLAST of Carg08130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941597.1	7.0e-10	100.00	uncharacterized protein At2g23090-like [Cucurbita moschata]	[more]
XP_023524477.1	7.0e-10	100.00	uncharacterized protein At2g23090-like [Cucurbita pepo subsp. pepo]	[more]
XP_004152272.1	1.6e-09	97.37	PREDICTED: uncharacterized protein At2g23090 [Cucumis sativus] >XP_008454381.1 P...	[more]
XP_022149288.1	1.6e-09	97.37	uncharacterized protein At2g23090-like [Momordica charantia]	[more]
XP_022922955.1	1.6e-09	97.37	uncharacterized protein At2g23090-like [Cucurbita moschata] >XP_022984540.1 unch...	[more]

BLAST of Carg08130 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23090.1	3.9e-07	74.36	Uncharacterised protein family SERF	[more]

BLAST of Carg08130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O64818\|Y2309_ARATH	7.1e-06	74.36	Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P...	[more]

BLAST of Carg08130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9ITZ3\|A0A2N9ITZ3_FAGSY	4.6e-10	100.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55737 PE=4 SV=1	[more]
tr\|A0A1S3BZP7\|A0A1S3BZP7_CUCME	1.0e-09	97.37	uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103494797 P...	[more]
tr\|A0A0A0KV37\|A0A0A0KV37_CUCSA	1.0e-09	97.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000980 PE=4 SV=1	[more]
tr\|A0A2I4DKL5\|A0A2I4DKL5_9ROSI	1.3e-09	97.37	uncharacterized protein At2g23090-like OS=Juglans regia OX=51240 GN=LOC108981054...	[more]
tr\|A0A2I0ADN9\|A0A2I0ADN9_9ASPA	5.1e-09	92.11	Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash009149 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026939	At2g23090-like
IPR007513	Uncharacterised_SERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08130-RA	Carg08130-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 3..35 e-value: 5.2E-7 score: 30.3
IPR026939	At2g23090-like	GENE3D	G3DSA:4.10.1050.10		coord: 1..46 e-value: 4.1E-14 score: 54.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33788	FAMILY NOT NAMED	coord: 1..39
None	No IPR available	PANTHER	PTHR33788:SF7	SUBFAMILY NOT NAMED	coord: 1..39
None	No IPR available	SUPERFAMILY	SSF118359	Expressed protein At2g23090/F21P24.15	coord: 1..41

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08130	Cla006411	Watermelon (97103) v1	carwmB0366
Carg08130	Csa4G000980	Cucumber (Chinese Long) v2	carcuB0402
Carg08130	Csa4G642360	Cucumber (Chinese Long) v2	carcuB0407
Carg08130	Csa6G494960	Cucumber (Chinese Long) v2	carcuB0409
Carg08130	MELO3C007614	Melon (DHL92) v3.5.1	carmeB0386
Carg08130	ClCG10G010550	Watermelon (Charleston Gray)	carwcgB0365
Carg08130	CSPI04G00520	Wild cucumber (PI 183967)	carcpiB0407
Carg08130	Cucsa.097410	Cucumber (Gy14) v1	carcgyB0432
Carg08130	Cucsa.102990	Cucumber (Gy14) v1	carcgyB0433
Carg08130	CmaCh04G004600	Cucurbita maxima (Rimu)	carcmaB0529
Carg08130	CmaCh16G003290	Cucurbita maxima (Rimu)	carcmaB0526
Carg08130	CmoCh07G006730	Cucurbita moschata (Rifu)	carcmoB0516
Carg08130	CmoCh16G003480	Cucurbita moschata (Rifu)	carcmoB0509
Carg08130	CmoCh04G004910	Cucurbita moschata (Rifu)	carcmoB0514
Carg08130	Lsi01G009150	Bottle gourd (USVL1VR-Ls)	carlsiB340
Carg08130	Cp4.1LG01g02540	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08130	Cp4.1LG14g04340	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08130	CsGy4G000450	Cucumber (Gy14) v2	carcgybB0383
Carg08130	CsGy6G028180	Cucumber (Gy14) v2	carcgybB0388
Carg08130	MELO3C017988.2	Melon (DHL92) v3.6.1	carmedB0387
Carg08130	MELO3C007614.2	Melon (DHL92) v3.6.1	carmedB0390
Carg08130	CsaV3_4G034900	Cucumber (Chinese Long) v3	carcucB0410
Carg08130	CsaV3_4G000470	Cucumber (Chinese Long) v3	carcucB0406
Carg08130	Cla97C10G193480	Watermelon (97103) v2	carwmbB0391
Carg08130	Cla97C05G102180	Watermelon (97103) v2	carwmbB0399
Carg08130	Bhi03G000769	Wax gourd	carwgoB0464
Carg08130	Bhi09G002676	Wax gourd	carwgoB0466

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08130	Silver-seed gourd	carcarB217
Carg08130	Silver-seed gourd	carcarB324
Carg08130	Silver-seed gourd	carcarB401
Carg08130	Silver-seed gourd	carcarB402
Carg08130	Cucumber (Gy14) v2	carcgybB0389
Carg08130	Cucumber (Gy14) v1	carcgyB0434
Carg08130	Cucurbita maxima (Rimu)	carcmaB0528
Carg08130	Cucurbita maxima (Rimu)	carcmaB0525
Carg08130	Cucurbita moschata (Rifu)	carcmoB0508
Carg08130	Cucurbita moschata (Rifu)	carcmoB0512
Carg08130	Cucurbita pepo (Zucchini)	carcpeB0529
Carg08130	Wild cucumber (PI 183967)	carcpiB0413
Carg08130	Cucumber (Chinese Long) v2	carcuB0410
Carg08130	Cucumber (Chinese Long) v3	carcucB0412
Carg08130	Bottle gourd (USVL1VR-Ls)	carlsiB341
Carg08130	Bottle gourd (USVL1VR-Ls)	carlsiB342
Carg08130	Melon (DHL92) v3.5.1	carmeB0377
Carg08130	Melon (DHL92) v3.5.1	carmeB0383
Carg08130	Melon (DHL92) v3.6.1	carmedB0382
Carg08130	Watermelon (Charleston Gray)	carwcgB0368
Carg08130	Watermelon (97103) v1	carwmB0375
Carg08130	Watermelon (97103) v2	carwmbB0394
Carg08130	Watermelon (97103) v2	carwmbB0401
Carg08130	Wax gourd	carwgoB0456
Carg08130	Wax gourd	carwgoB0463