CSPI03G28060 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G28060
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 25641948 .. 25644163 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAGCCCCAATCGATGGTGAAATCATAATGTAACCGTAGCAACATTGTATGGGCTCCCGAATTTAACAGCCCGAGGAGAGAAAATGGGACCGAGACTATCTTGCTTTAGGATAAAATTAGCTTGATACACCCTCCGTTTGCTTCTTTTTGTAACATTGCCTCAGAATTCCACTATTCTGATTCTCACTCCGCCCGTTTTTACTGTTACCTGACCCCAAAATGTTCGCTACGGTGGTTCCTCGATTCTCAATTCTCCTAATGCAGAGCCGCTCCGACTCTAACCCTCGCCGTGGTTTTGGAAACAAGGAAGACAATAAAGTACGTATACCCATGTTTATGGTGCATTTTTAGTTACAACGGCTTCCTATCTTGAAAATTTACTGTAGATTGGCACATGATTGCGCTCATTTTTAGATATCATGCTATCCTTGATTTTCGATAGGAAGCCTAGTTTGACCATTGCTCGTGTGCATGGTTTTGGTTGAATTATTTATATGAGTACGTAGTGATTTGGTATAAGATAAAAATTTGTTTATATGTTTTGGATAGCAATTTTCTATTCAAAAGAAGTTTCTAATCTAGAATAGTAGAAATTTCTCAAGTATCCAATGCACAACCCCACATTGTAGAAGCAAAACGCACAACTACAATAGTTAGTTAAGATTCTTTCCATTACAGTAGTCCATGATGATATACGTACGCCAATTTAAAGAGAGGATAAAAGTTGAGGTTCTATGCATAAAGTCTTATAAGTCTGAAGTTAATTTATTGGAGTTTGGAAGTTTGTGTTTGGGTGTAAAATTGTAAGATGGAGTTTGTCGACAAATGTGAAAGGTAGAGAAAGCAGGGAAGGCGAGTTAGTTGATAAATGTGCAAACTTTGATGTTGATAAATGTGCAAACTTTGATGGTGTTAACTATTGAAATTGTGTTGTTTAACACCAACTTAAGGGTCAAGAGGCTCCTAAGTGTCAATCCTTCCTATGGCTTGTTCAATATTTCTTTGTTTGTGCTATTGATTTGTCCTTCTTCATTACTTGTTCCTTCGACTGTTTCTTGTAGAATCTGTGCTAGGCTGATTCTATAAGCCATAGCGACCAAGTTTTGTGATTTTGCCTTGTGGTTGTTCTGTTATTTTCTGCTATTCTCTCTTTTACACCAATAGACAGAGGGAATGAGTATTTTTCCATGGTCCGTCTCTATCCACCTAAATCCCCATATGCAGTTATATAGTTGTATCAAAATTCCTCTCCCGTGACTTCAAATTGTTAACTGAGCTATGGGCATGATCATTATGGTTGAATTCCTTTTCCCCCCTCTTAATTGATATTATTAATATTCAATTCAATTAATTTGTTTAATCCTCCAATTAAGGCATTATTAACTCATTTTGTTATTTTACACTTAGGCTGACAAAGCCGGCAGCTCGGGCAAGGAGAAGGGTAGGGTGTATCAACCAAGGTATTCAAAATTAGTTTAGTTTTTTTGAAAACTTGAAATTATCGTTTGTGGTTTAGAAATATATTGAATATATAAATAAAGAAAATATCCTTCACTAATTACAAATGATAGTGTGTAATGAGTAAAATTAAAAGGGGCCGTTTGTTTAAGTTGGTGTCAGTTGGATCTGGTAGAACGGGTAACCTCATTGAGCTGCTCTAATACATCAAAGAGAGAGAGAAAATAATAAAGAAGAGAATGTATCAGATACCTATTGGCACTTAGCTAGGTATTGATATTGTCACCCTTTCTAATAGAAAGAAATCGACTAATTGAAAGAATACACTCTAGTAGAAGGGTTGACTGGATTGATTACTGCACAAGAGTTGACATTATCCTTTTACTTGACATGCTCTCTATATCATTATTTTACGCTCTGTCATCTTCTAATCTAATGAATTGGGGATAAGAGCTGATCAATTTTTATGCCTTTTCACATCCGAAGTATCTTCTCAATTTATTTTCACTTTTGATGACTGTGCTAATAATGTGTTTCCCTCTGCTTTGGACTCACTGCTGATGTAGGAAACCCATTCCAAAACAATCTAGTACAGTACCCACGCGTAAGTGTAACTCATTTTCCTGTAAGTTTCTTCATTATTTTCTTCCTTTTCTTTTATGATCTCTTAATCGAATGGTTTCTTCGTTTTTCCTGTACGTACATTAGCTATGCGGGGGCTTGGATAGCAGGGGAGCCTCTAGGCTTTTCTTGGTGA

mRNA sequence

ATGTTCGCTACGGTGGTTCCTCGATTCTCAATTCTCCTAATGCAGAGCCGCTCCGACTCTAACCCTCGCCGTGGTTTTGGAAACAAGGAAGACAATAAAGCTGACAAAGCCGGCAGCTCGGGCAAGGAGAAGGGTAGGGTGTATCAACCAAGGAAACCCATTCCAAAACAATCTAGTACAGTACCCACGCGTAAGTGTAACTCATTTTCCTGGGAGCCTCTAGGCTTTTCTTGGTGA

Coding sequence (CDS)

ATGTTCGCTACGGTGGTTCCTCGATTCTCAATTCTCCTAATGCAGAGCCGCTCCGACTCTAACCCTCGCCGTGGTTTTGGAAACAAGGAAGACAATAAAGCTGACAAAGCCGGCAGCTCGGGCAAGGAGAAGGGTAGGGTGTATCAACCAAGGAAACCCATTCCAAAACAATCTAGTACAGTACCCACGCGTAAGTGTAACTCATTTTCCTGGGAGCCTCTAGGCTTTTCTTGGTGA

Homology

[Close]

BLAST of CSPI03G28060 vs. TrEMBL
Match: A0A0A0L8X7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G639540 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.6e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60
          MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST
Sbjct: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60

Query: 61 VPTR 65
          VPT+
Sbjct: 61 VPTQ 64

[Close]

BLAST of CSPI03G28060 vs. NCBI nr
Match: gi|700203277|gb|KGN58410.1| (hypothetical protein Csa_3G639540 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 5.2e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60
          MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST
Sbjct: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60

Query: 61 VPTR 65
          VPT+
Sbjct: 61 VPTQ 64

[Close]

BLAST of CSPI03G28060 vs. NCBI nr
Match: gi|449453336|ref|XP_004144414.1| (PREDICTED: uncharacterized protein LOC101220521 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 5.2e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60
          MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST
Sbjct: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60

Query: 61 VPTR 65
          VPT+
Sbjct: 61 VPTQ 64

[Close]

BLAST of CSPI03G28060 vs. NCBI nr
Match: gi|659130317|ref|XP_008465106.1| (PREDICTED: uncharacterized protein LOC103502794 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 1


Query: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60
          M +TVVPRF ILLMQSRSDSNPRRGFGNKEDNKADKAGSSG +KGRVYQPRKPIPKQSST
Sbjct: 1  MLSTVVPRFQILLMQSRSDSNPRRGFGNKEDNKADKAGSSGNQKGRVYQPRKPIPKQSST 60

Query: 61 VPTR 65
          VPT+
Sbjct: 61 VPTQ 64

The following BLAST results are available for this feature:

BLAST of CSPI03G28060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G28060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8X7_CUCSA	3.6e-26	98.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G639540 PE=4 SV=1	[more]

BLAST of CSPI03G28060 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G28060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203277\|gb\|KGN58410.1\|	5.2e-26	98.44	hypothetical protein Csa_3G639540 [Cucumis sativus]	[more]
gi\|449453336\|ref\|XP_004144414.1\|	5.2e-26	98.44	PREDICTED: uncharacterized protein LOC101220521 [Cucumis sativus]	[more]
gi\|659130317\|ref\|XP_008465106.1\|	1.4e-23	90.63	PREDICTED: uncharacterized protein LOC103502794 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G28060.1	CSPI03G28060.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G28060	Csa3G639540	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G28060	MELO3C026715	Melon (DHL92) v3.5.1	cpimeB200
CSPI03G28060	ClCG07G014700	Watermelon (Charleston Gray)	cpiwcgB262
CSPI03G28060	Lsi07G006820	Bottle gourd (USVL1VR-Ls)	cpilsiB232
CSPI03G28060	MELO3C026715.2	Melon (DHL92) v3.6.1	cpimedB194
CSPI03G28060	CsaV3_3G030460	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G28060	Cla97C07G141610	Watermelon (97103) v2	cpiwmbB248
CSPI03G28060	Cucsa.149750	Cucumber (Gy14) v1	cgycpiB221
CSPI03G28060	CmaCh14G011820	Cucurbita maxima (Rimu)	cmacpiB245
CSPI03G28060	CmoCh14G012060	Cucurbita moschata (Rifu)	cmocpiB234
CSPI03G28060	Cp4.1LG03g15180	Cucurbita pepo (Zucchini)	cpecpiB603
CSPI03G28060	CsGy3G026080	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None