CSPI03G28060.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G28060.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 25641948 .. 25644163 (+)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAGCCCCAATCGATGGTGAAATCATAATGTAACCGTAGCAACATTGTATGGGCTCCCGAATTTAACAGCCCGAGGAGAGAAAATGGGACCGAGACTATCTTGCTTTAGGATAAAATTAGCTTGATACACCCTCCGTTTGCTTCTTTTTGTAACATTGCCTCAGAATTCCACTATTCTGATTCTCACTCCGCCCGTTTTTACTGTTACCTGACCCCAAAATGTTCGCTACGGTGGTTCCTCGATTCTCAATTCTCCTAATGCAGAGCCGCTCCGACTCTAACCCTCGCCGTGGTTTTGGAAACAAGGAAGACAATAAAGTACGTATACCCATGTTTATGGTGCATTTTTAGTTACAACGGCTTCCTATCTTGAAAATTTACTGTAGATTGGCACATGATTGCGCTCATTTTTAGATATCATGCTATCCTTGATTTTCGATAGGAAGCCTAGTTTGACCATTGCTCGTGTGCATGGTTTTGGTTGAATTATTTATATGAGTACGTAGTGATTTGGTATAAGATAAAAATTTGTTTATATGTTTTGGATAGCAATTTTCTATTCAAAAGAAGTTTCTAATCTAGAATAGTAGAAATTTCTCAAGTATCCAATGCACAACCCCACATTGTAGAAGCAAAACGCACAACTACAATAGTTAGTTAAGATTCTTTCCATTACAGTAGTCCATGATGATATACGTACGCCAATTTAAAGAGAGGATAAAAGTTGAGGTTCTATGCATAAAGTCTTATAAGTCTGAAGTTAATTTATTGGAGTTTGGAAGTTTGTGTTTGGGTGTAAAATTGTAAGATGGAGTTTGTCGACAAATGTGAAAGGTAGAGAAAGCAGGGAAGGCGAGTTAGTTGATAAATGTGCAAACTTTGATGTTGATAAATGTGCAAACTTTGATGGTGTTAACTATTGAAATTGTGTTGTTTAACACCAACTTAAGGGTCAAGAGGCTCCTAAGTGTCAATCCTTCCTATGGCTTGTTCAATATTTCTTTGTTTGTGCTATTGATTTGTCCTTCTTCATTACTTGTTCCTTCGACTGTTTCTTGTAGAATCTGTGCTAGGCTGATTCTATAAGCCATAGCGACCAAGTTTTGTGATTTTGCCTTGTGGTTGTTCTGTTATTTTCTGCTATTCTCTCTTTTACACCAATAGACAGAGGGAATGAGTATTTTTCCATGGTCCGTCTCTATCCACCTAAATCCCCATATGCAGTTATATAGTTGTATCAAAATTCCTCTCCCGTGACTTCAAATTGTTAACTGAGCTATGGGCATGATCATTATGGTTGAATTCCTTTTCCCCCCTCTTAATTGATATTATTAATATTCAATTCAATTAATTTGTTTAATCCTCCAATTAAGGCATTATTAACTCATTTTGTTATTTTACACTTAGGCTGACAAAGCCGGCAGCTCGGGCAAGGAGAAGGGTAGGGTGTATCAACCAAGGTATTCAAAATTAGTTTAGTTTTTTTGAAAACTTGAAATTATCGTTTGTGGTTTAGAAATATATTGAATATATAAATAAAGAAAATATCCTTCACTAATTACAAATGATAGTGTGTAATGAGTAAAATTAAAAGGGGCCGTTTGTTTAAGTTGGTGTCAGTTGGATCTGGTAGAACGGGTAACCTCATTGAGCTGCTCTAATACATCAAAGAGAGAGAGAAAATAATAAAGAAGAGAATGTATCAGATACCTATTGGCACTTAGCTAGGTATTGATATTGTCACCCTTTCTAATAGAAAGAAATCGACTAATTGAAAGAATACACTCTAGTAGAAGGGTTGACTGGATTGATTACTGCACAAGAGTTGACATTATCCTTTTACTTGACATGCTCTCTATATCATTATTTTACGCTCTGTCATCTTCTAATCTAATGAATTGGGGATAAGAGCTGATCAATTTTTATGCCTTTTCACATCCGAAGTATCTTCTCAATTTATTTTCACTTTTGATGACTGTGCTAATAATGTGTTTCCCTCTGCTTTGGACTCACTGCTGATGTAGGAAACCCATTCCAAAACAATCTAGTACAGTACCCACGCGTAAGTGTAACTCATTTTCCTGTAAGTTTCTTCATTATTTTCTTCCTTTTCTTTTATGATCTCTTAATCGAATGGTTTCTTCGTTTTTCCTGTACGTACATTAGCTATGCGGGGGCTTGGATAGCAGGGGAGCCTCTAGGCTTTTCTTGGTGA

mRNA sequence

ATGTTCGCTACGGTGGTTCCTCGATTCTCAATTCTCCTAATGCAGAGCCGCTCCGACTCTAACCCTCGCCGTGGTTTTGGAAACAAGGAAGACAATAAAGCTGACAAAGCCGGCAGCTCGGGCAAGGAGAAGGGTAGGGTGTATCAACCAAGGAAACCCATTCCAAAACAATCTAGTACAGTACCCACGCGTAAGTGTAACTCATTTTCCTGGGAGCCTCTAGGCTTTTCTTGGTGA

Coding sequence (CDS)

ATGTTCGCTACGGTGGTTCCTCGATTCTCAATTCTCCTAATGCAGAGCCGCTCCGACTCTAACCCTCGCCGTGGTTTTGGAAACAAGGAAGACAATAAAGCTGACAAAGCCGGCAGCTCGGGCAAGGAGAAGGGTAGGGTGTATCAACCAAGGAAACCCATTCCAAAACAATCTAGTACAGTACCCACGCGTAAGTGTAACTCATTTTCCTGGGAGCCTCTAGGCTTTTCTTGGTGA

Homology

[Close]

BLAST of CSPI03G28060.1 vs. TrEMBL
Match: A0A0A0L8X7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G639540 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.6e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60
          MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST
Sbjct: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60

Query: 61 VPTR 65
          VPT+
Sbjct: 61 VPTQ 64

[Close]

BLAST of CSPI03G28060.1 vs. NCBI nr
Match: gi|700203277|gb|KGN58410.1| (hypothetical protein Csa_3G639540 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 5.2e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60
          MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST
Sbjct: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60

Query: 61 VPTR 65
          VPT+
Sbjct: 61 VPTQ 64

[Close]

BLAST of CSPI03G28060.1 vs. NCBI nr
Match: gi|449453336|ref|XP_004144414.1| (PREDICTED: uncharacterized protein LOC101220521 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 5.2e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60
          MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST
Sbjct: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60

Query: 61 VPTR 65
          VPT+
Sbjct: 61 VPTQ 64

[Close]

BLAST of CSPI03G28060.1 vs. NCBI nr
Match: gi|659130317|ref|XP_008465106.1| (PREDICTED: uncharacterized protein LOC103502794 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 1


Query: 1  MFATVVPRFSILLMQSRSDSNPRRGFGNKEDNKADKAGSSGKEKGRVYQPRKPIPKQSST 60
          M +TVVPRF ILLMQSRSDSNPRRGFGNKEDNKADKAGSSG +KGRVYQPRKPIPKQSST
Sbjct: 1  MLSTVVPRFQILLMQSRSDSNPRRGFGNKEDNKADKAGSSGNQKGRVYQPRKPIPKQSST 60

Query: 61 VPTR 65
          VPT+
Sbjct: 61 VPTQ 64

The following BLAST results are available for this feature:

BLAST of CSPI03G28060.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G28060.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8X7_CUCSA	3.6e-26	98.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G639540 PE=4 SV=1	[more]

BLAST of CSPI03G28060.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G28060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203277\|gb\|KGN58410.1\|	5.2e-26	98.44	hypothetical protein Csa_3G639540 [Cucumis sativus]	[more]
gi\|449453336\|ref\|XP_004144414.1\|	5.2e-26	98.44	PREDICTED: uncharacterized protein LOC101220521 [Cucumis sativus]	[more]
gi\|659130317\|ref\|XP_008465106.1\|	1.4e-23	90.63	PREDICTED: uncharacterized protein LOC103502794 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G28060	CSPI03G28060	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G28060.1	CSPI03G28060.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G28060.1.utr5p1	CSPI03G28060.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G28060.1.cds1	CSPI03G28060.1.cds1	CDS
CSPI03G28060.1.cds2	CSPI03G28060.1.cds2	CDS
CSPI03G28060.1.cds3	CSPI03G28060.1.cds3	CDS
CSPI03G28060.1.cds4	CSPI03G28060.1.cds4	CDS