CSPI03G20560 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G20560
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 16544958 .. 16545248 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTGGTTAGCTACTCCCTCACCGAGAGGATTGCCTTTTGTGTCTTTGTGCCTTTACGTCTTGTATTCATGTCCCTCTTTCTATGCAAAGGAAGTAAACAAATTTGGTCTTTATGACCCCATAGAATTTCTCTTTCTCTATAGTAGTTATATTCTGATGTTGCTTCTCGTTCTTGCAGAGCTTGCAAGAGGTTTTGAACTAGATGGATATCAAAGAGGTTCACGCTTATTGCTTATGCTATCTATAGCAGTTGCAATCTCGTTTTCTGAGTACACAACTCTTCCACCT

mRNA sequence

ATGCATTGGTTAGCTACTCCCTCACCGAGAGGATTGCCTTTTGTGTCTTTGTGCCTTTACGTCTTGTATTCATGTCCCTCTTTCTATGCAAAGGAAGTAAACAAATTTGGTCTTTATGACCCCATAGAATTTCTCTTTCTCTATAGTAGTTATATTCTGATGTTGCTTCTCGTTCTTGCAGAGCTTGCAAGAGGTTTTGAACTAGATGGATATCAAAGAGGTTCACGCTTATTGCTTATGCTATCTATAGCAGTTGCAATCTCGTTTTCTGAGTACACAACTCTTCCACCT

Coding sequence (CDS)

ATGCATTGGTTAGCTACTCCCTCACCGAGAGGATTGCCTTTTGTGTCTTTGTGCCTTTACGTCTTGTATTCATGTCCCTCTTTCTATGCAAAGGAAGTAAACAAATTTGGTCTTTATGACCCCATAGAATTTCTCTTTCTCTATAGTAGTTATATTCTGATGTTGCTTCTCGTTCTTGCAGAGCTTGCAAGAGGTTTTGAACTAGATGGATATCAAAGAGGTTCACGCTTATTGCTTATGCTATCTATAGCAGTTGCAATCTCGTTTTCTGAGTACACAACTCTTCCACCT
Homology
[Close]
BLAST of CSPI03G20560 vs. TrEMBL
Match: A0A0A0L6X8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271330 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.1e-44
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = 1 

Query: 1  MHWLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIEFLFLYSSYILMLLLVLA 60
          MH LATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIE LFLYSSYILMLLLVLA
Sbjct: 1  MHLLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIELLFLYSSYILMLLLVLA 60

Query: 61 ELARGFELDGYQRGSRLLLMLSIAVAISFSEYTTLPP 98
          ELARGFELDGYQRGSRLLLMLS AVAISFSEYTTLPP
Sbjct: 61 ELARGFELDGYQRGSRLLLMLSKAVAISFSEYTTLPP 97

[Close]
BLAST of CSPI03G20560 vs. NCBI nr
Match: gi|700202607|gb|KGN57740.1| (hypothetical protein Csa_3G271330 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.0e-44
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = 1 

Query: 1  MHWLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIEFLFLYSSYILMLLLVLA 60
          MH LATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIE LFLYSSYILMLLLVLA
Sbjct: 1  MHLLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIELLFLYSSYILMLLLVLA 60

Query: 61 ELARGFELDGYQRGSRLLLMLSIAVAISFSEYTTLPP 98
          ELARGFELDGYQRGSRLLLMLS AVAISFSEYTTLPP
Sbjct: 61 ELARGFELDGYQRGSRLLLMLSKAVAISFSEYTTLPP 97

The following BLAST results are available for this feature:
BLAST of CSPI03G20560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G20560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6X8_CUCSA2.1e-4496.91Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271330 PE=4 SV=1[more]
BLAST of CSPI03G20560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G20560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202607|gb|KGN57740.1|3.0e-4496.91hypothetical protein Csa_3G271330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G20560.1CSPI03G20560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G20560Csa3G271330Cucumber (Chinese Long) v2cpicuB120
CSPI03G20560CsaV3_3G020530Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G20560Cucurbita maxima (Rimu)cmacpiB244
CSPI03G20560Cucurbita maxima (Rimu)cmacpiB458
CSPI03G20560Cucurbita moschata (Rifu)cmocpiB232
CSPI03G20560Cucurbita moschata (Rifu)cmocpiB446
CSPI03G20560Melon (DHL92) v3.5.1cpimeB243
CSPI03G20560Watermelon (Charleston Gray)cpiwcgB241
CSPI03G20560Watermelon (97103) v1cpiwmB246
CSPI03G20560Cucurbita pepo (Zucchini)cpecpiB550
CSPI03G20560Cucurbita pepo (Zucchini)cpecpiB602
CSPI03G20560Bottle gourd (USVL1VR-Ls)cpilsiB210
CSPI03G20560Melon (DHL92) v3.6.1cpimedB229
CSPI03G20560Cucumber (Gy14) v2cgybcpiB110
CSPI03G20560Silver-seed gourdcarcpiB0520
CSPI03G20560Silver-seed gourdcarcpiB0798
CSPI03G20560Watermelon (97103) v2cpiwmbB224
CSPI03G20560Wax gourdcpiwgoB271
CSPI03G20560Cucumber (Gy14) v1cgycpiB003