CsaV3_3G020530 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020530
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 16665007 .. 16665300 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTGTTAGCTACTCCCTCACCGAGAGGATTGCCTTTTGTGTCTTTGTGCCTTTACGTCTTGTATTCATGTCCCTCTTTCTATGCAAAGGAAGTAAACAAATTTGGTCTTTATGACCCCATAGAACTTCTCTTTCTCTATAGTAGTTATATTCTGATGTTGCTTCTCGTTCTTGCAGAGCTTGCAAGAGGTTTTGAACTAGATGGATATCAAAGAGGTTCACGCTTATTGCTTATGCTATCTAAAGCAGTTGCAATCTCGTTTTCTGAGTACACAACTCTTCCACCTTAG

mRNA sequence

ATGCATTTGTTAGCTACTCCCTCACCGAGAGGATTGCCTTTTGTGTCTTTGTGCCTTTACGTCTTGTATTCATGTCCCTCTTTCTATGCAAAGGAAGTAAACAAATTTGGTCTTTATGACCCCATAGAACTTCTCTTTCTCTATAGTAGTTATATTCTGATGTTGCTTCTCGTTCTTGCAGAGCTTGCAAGAGGTTTTGAACTAGATGGATATCAAAGAGGTTCACGCTTATTGCTTATGCTATCTAAAGCAGTTGCAATCTCGTTTTCTGAGTACACAACTCTTCCACCTTAG

Coding sequence (CDS)

ATGCATTTGTTAGCTACTCCCTCACCGAGAGGATTGCCTTTTGTGTCTTTGTGCCTTTACGTCTTGTATTCATGTCCCTCTTTCTATGCAAAGGAAGTAAACAAATTTGGTCTTTATGACCCCATAGAACTTCTCTTTCTCTATAGTAGTTATATTCTGATGTTGCTTCTCGTTCTTGCAGAGCTTGCAAGAGGTTTTGAACTAGATGGATATCAAAGAGGTTCACGCTTATTGCTTATGCTATCTAAAGCAGTTGCAATCTCGTTTTCTGAGTACACAACTCTTCCACCTTAG

Protein sequence

MHLLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIELLFLYSSYILMLLLVLAELARGFELDGYQRGSRLLLMLSKAVAISFSEYTTLPP
Homology
[Close]
BLAST of CsaV3_3G020530 vs. NCBI nr
Match: KGN57740.1 (hypothetical protein Csa_3G271330 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 4.9e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MHLLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIELLFLYSSYILMLLLVLA 60
          MHLLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIELLFLYSSYILMLLLVLA
Sbjct: 1  MHLLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIELLFLYSSYILMLLLVLA 60

Query: 61 ELARGFELDGYQRGSRLLLMLSKAVAISFSEYTTLPP 98
          ELARGFELDGYQRGSRLLLMLSKAVAISFSEYTTLPP
Sbjct: 61 ELARGFELDGYQRGSRLLLMLSKAVAISFSEYTTLPP 97

[Close]
BLAST of CsaV3_3G020530 vs. TrEMBL
Match: tr|A0A0A0L6X8|A0A0A0L6X8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271330 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.2e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MHLLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIELLFLYSSYILMLLLVLA 60
          MHLLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIELLFLYSSYILMLLLVLA
Sbjct: 1  MHLLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIELLFLYSSYILMLLLVLA 60

Query: 61 ELARGFELDGYQRGSRLLLMLSKAVAISFSEYTTLPP 98
          ELARGFELDGYQRGSRLLLMLSKAVAISFSEYTTLPP
Sbjct: 61 ELARGFELDGYQRGSRLLLMLSKAVAISFSEYTTLPP 97

The following BLAST results are available for this feature:
BLAST of CsaV3_3G020530 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57740.14.9e-46100.00hypothetical protein Csa_3G271330 [Cucumis sativus][more]
BLAST of CsaV3_3G020530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020530 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6X8|A0A0A0L6X8_CUCSA3.2e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271330 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020530.1CsaV3_3G020530.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G020530CSPI03G20560Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G020530Silver-seed gourdcarcucB0518
CsaV3_3G020530Silver-seed gourdcarcucB0801
CsaV3_3G020530Cucumber (Gy14) v2cgybcucB117
CsaV3_3G020530Cucumber (Gy14) v1cgycucB006
CsaV3_3G020530Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G020530Cucurbita maxima (Rimu)cmacucB0547
CsaV3_3G020530Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G020530Cucurbita moschata (Rifu)cmocucB0532
CsaV3_3G020530Cucurbita pepo (Zucchini)cpecucB0686
CsaV3_3G020530Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G020530Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G020530Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G020530Melon (DHL92) v3.6.1cucmedB235
CsaV3_3G020530Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G020530Watermelon (97103) v1cucwmB256
CsaV3_3G020530Watermelon (97103) v2cucwmbB220
CsaV3_3G020530Wax gourdcucwgoB274