CSPI03G20560.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI03G20560.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 16544958 .. 16545248 (+)
Sequence length291
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTGGTTAGCTACTCCCTCACCGAGAGGATTGCCTTTTGTGTCTTTGTGCCTTTACGTCTTGTATTCATGTCCCTCTTTCTATGCAAAGGAAGTAAACAAATTTGGTCTTTATGACCCCATAGAATTTCTCTTTCTCTATAGTAGTTATATTCTGATGTTGCTTCTCGTTCTTGCAGAGCTTGCAAGAGGTTTTGAACTAGATGGATATCAAAGAGGTTCACGCTTATTGCTTATGCTATCTATAGCAGTTGCAATCTCGTTTTCTGAGTACACAACTCTTCCACCT

mRNA sequence

ATGCATTGGTTAGCTACTCCCTCACCGAGAGGATTGCCTTTTGTGTCTTTGTGCCTTTACGTCTTGTATTCATGTCCCTCTTTCTATGCAAAGGAAGTAAACAAATTTGGTCTTTATGACCCCATAGAATTTCTCTTTCTCTATAGTAGTTATATTCTGATGTTGCTTCTCGTTCTTGCAGAGCTTGCAAGAGGTTTTGAACTAGATGGATATCAAAGAGGTTCACGCTTATTGCTTATGCTATCTATAGCAGTTGCAATCTCGTTTTCTGAGTACACAACTCTTCCACCT

Coding sequence (CDS)

ATGCATTGGTTAGCTACTCCCTCACCGAGAGGATTGCCTTTTGTGTCTTTGTGCCTTTACGTCTTGTATTCATGTCCCTCTTTCTATGCAAAGGAAGTAAACAAATTTGGTCTTTATGACCCCATAGAATTTCTCTTTCTCTATAGTAGTTATATTCTGATGTTGCTTCTCGTTCTTGCAGAGCTTGCAAGAGGTTTTGAACTAGATGGATATCAAAGAGGTTCACGCTTATTGCTTATGCTATCTATAGCAGTTGCAATCTCGTTTTCTGAGTACACAACTCTTCCACCT
Homology
[Close]
BLAST of CSPI03G20560.1 vs. TrEMBL
Match: A0A0A0L6X8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271330 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.1e-44
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = 1 

Query: 1  MHWLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIEFLFLYSSYILMLLLVLA 60
          MH LATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIE LFLYSSYILMLLLVLA
Sbjct: 1  MHLLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIELLFLYSSYILMLLLVLA 60

Query: 61 ELARGFELDGYQRGSRLLLMLSIAVAISFSEYTTLPP 98
          ELARGFELDGYQRGSRLLLMLS AVAISFSEYTTLPP
Sbjct: 61 ELARGFELDGYQRGSRLLLMLSKAVAISFSEYTTLPP 97

[Close]
BLAST of CSPI03G20560.1 vs. NCBI nr
Match: gi|700202607|gb|KGN57740.1| (hypothetical protein Csa_3G271330 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.0e-44
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = 1 

Query: 1  MHWLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIEFLFLYSSYILMLLLVLA 60
          MH LATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIE LFLYSSYILMLLLVLA
Sbjct: 1  MHLLATPSPRGLPFVSLCLYVLYSCPSFYAKEVNKFGLYDPIELLFLYSSYILMLLLVLA 60

Query: 61 ELARGFELDGYQRGSRLLLMLSIAVAISFSEYTTLPP 98
          ELARGFELDGYQRGSRLLLMLS AVAISFSEYTTLPP
Sbjct: 61 ELARGFELDGYQRGSRLLLMLSKAVAISFSEYTTLPP 97

The following BLAST results are available for this feature:
BLAST of CSPI03G20560.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G20560.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6X8_CUCSA2.1e-4496.91Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271330 PE=4 SV=1[more]
BLAST of CSPI03G20560.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G20560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202607|gb|KGN57740.1|3.0e-4496.91hypothetical protein Csa_3G271330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G20560CSPI03G20560gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G20560.1CSPI03G20560.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G20560.mrna.cds.1CSPI03G20560.mrna.cds.1CDS