CSPI03G13050 (gene) Wild cucumber (PI 183967)

NameCSPI03G13050
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPentatricopeptide repeat-containing-like protein
LocationChr3 : 9918678 .. 9919575 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCTCGCTTACGAAGTGCTCTCATCACGATGTATGCAAGCTGTGGCGCCATGGACTTGGCTTGGGATTTGTATGAAAAGATTTCCCCTAAATACATGGTTGTCTTGACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGAAAAATTGGAGATGCTCGCAATGTCTTTGATCAAATGGTGGAGGACTTGATATGTTGGAGTGCAATGATTTCTGGATAGACTGTGAGTGACTATCCTCAAGAGGCTTGTATTATTCAAGAAAATAGCAACAACTAGAAATGAAACCTGATGTAGTCACCATGCTTTAGATCAACAACTAGAAATGTCATTTCAGATTGTGCTCATCTTGGCGCTTTAGATCAAGCCAAATGGATACAAAATTATGTTGATAAAAATGGGTTTGGCAAGGCATTATCTGTCAATAATGCACTCATTGATATGTATGTCAAATGCGGGAGTCCAGAAGGAGGAAGAGAAGTTTTTGGAAAGACGCCAAAGAAAAATGCAATATCTTGGACAATTATGATTAATGCTCTTGAATGCATGGAGATGTTCACAGTGCTTTAAGCCTATTTCATCAAATAAAAGTTGAAAATGTGGAGCCTAATTGGATCACATTTGTAGGGTTGCTTTATGCTTGTAGCCATGGAGGTCTAGTTGAGGAAGGCCGAAGAATATTTCATTCACTGACCAATGAGTATGGTATAAGTCCCAAGCATGAGCACTTTGGTTGAATGGTTGACATGACCTGTTTTGCCGTGCAAATCTTCTCAGTGAAGCTCTTGAGATGATTGAGGCAATGCCCTTTGCTCCTAATGCTATCATTTGGGGGTCCCTTATGGCTGCTTGTCATGTCCATGGTGAGACTGAGTTAGGAGAATTTGCTGCTAAGTAA

mRNA sequence

ATGGATCCTCGCTTACGAAGTGCTCTCATCACGATGTATGCAAGCTGTGGCGCCATGGACTTGGCTTGGGATTTGTATGAAAAGATTTCCCCTAAATACATGGTTGTCTTGACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGAAAAATTGGAGATGCTCGCAATGTCTTTGATCAAATGTCACCATGCTTTAGATCAACAACTAGAAATGTCATTTCAGATTGTGCTCATCTTGGCGCTTTAGATCAAGCCAAATGGATACAAAATTATGTTGATAAAAATGGGTTTGGCAAGGCATTATCTGTCAATAATGCACTCATTGATATGTATGTCAAATGCGGGAGTCCAGAAGGAGGAAGAGAAGTTTTTGGAAAGACGCCAAAGAAAAATGCAATATCTTGGACAATTATGATTAATGCTCTTGAATGCATGGAGATCCATGGAGGTCTAGTTGAGGAAGGCCGAAGAATATTTCATTCACTGACCAATGATGAAGCTCTTGAGATGATTGAGGCAATGCCCTTTGCTCCTAATGCTATCATTTGGGGGTCCCTTATGGCTGCTTGTCATGTCCATGGTGAGACTGAGTTAGGAGAATTTGCTGCTAAGTAA

Coding sequence (CDS)

ATGGATCCTCGCTTACGAAGTGCTCTCATCACGATGTATGCAAGCTGTGGCGCCATGGACTTGGCTTGGGATTTGTATGAAAAGATTTCCCCTAAATACATGGTTGTCTTGACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGAAAAATTGGAGATGCTCGCAATGTCTTTGATCAAATGTCACCATGCTTTAGATCAACAACTAGAAATGTCATTTCAGATTGTGCTCATCTTGGCGCTTTAGATCAAGCCAAATGGATACAAAATTATGTTGATAAAAATGGGTTTGGCAAGGCATTATCTGTCAATAATGCACTCATTGATATGTATGTCAAATGCGGGAGTCCAGAAGGAGGAAGAGAAGTTTTTGGAAAGACGCCAAAGAAAAATGCAATATCTTGGACAATTATGATTAATGCTCTTGAATGCATGGAGATCCATGGAGGTCTAGTTGAGGAAGGCCGAAGAATATTTCATTCACTGACCAATGATGAAGCTCTTGAGATGATTGAGGCAATGCCCTTTGCTCCTAATGCTATCATTTGGGGGTCCCTTATGGCTGCTTGTCATGTCCATGGTGAGACTGAGTTAGGAGAATTTGCTGCTAAGTAA
BLAST of CSPI03G13050 vs. Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.1e-31
Identity = 78/234 (33.33%), Postives = 117/234 (50.00%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MD  L +AL+TMYA  G MD+A + + K+S + + V TAMVSG +K G++ DA+ +FDQ 
Sbjct: 245 MDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQT 304

Query: 61  SP----CFRSTTR-------------------------------NVISDCAHLGALDQAK 120
                 C+ +                                  +VIS CA+LG LD+AK
Sbjct: 305 EKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAK 364

Query: 121 WIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINALECME 180
           W+ + +  NG    LS+NNALI+MY KCG  +  R+VF K P++N +SW+ MINAL    
Sbjct: 365 WVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINAL---S 424

Query: 181 IHGGLVEEGRRIFHSLTNDEALEMIEAMPFAPNAIIWGSLMAACHVHGETELGE 200
           +HG    +   +F  +  +            PN + +  ++  C   G  E G+
Sbjct: 425 MHGE-ASDALSLFARMKQENV---------EPNEVTFVGVLYGCSHSGLVEEGK 465

BLAST of CSPI03G13050 vs. Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.8e-30
Identity = 79/261 (30.27%), Postives = 130/261 (49.81%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           ++P L  +L TMYA CG +  A  L++K+    +++  AM+SG AK G   +A ++F +M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 61  -SPCFRSTTRNV---ISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSP 120
            +   R  T ++   IS CA +G+L+QA+ +  YV ++ +   + +++ALIDM+ KCGS 
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374

Query: 121 EGGREVFGKTPKKNAISWTIMI-------NALECMEI----------------------- 180
           EG R VF +T  ++ + W+ MI        A E + +                       
Sbjct: 375 EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434

Query: 181 -HGGLVEEGRRIFHSLTN-----------------------DEALEMIEAMPFAPNAIIW 204
            H G+V EG   F+ + +                       D+A E+I+ MP  P   +W
Sbjct: 435 NHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494

BLAST of CSPI03G13050 vs. Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 6.2e-23
Identity = 64/225 (28.44%), Postives = 107/225 (47.56%), Query Frame = 1

Query: 4   RLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM--- 63
           RL +AL+  YA+CG MD+A  ++  +  + ++  T++V G  + G +  AR  FDQM   
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331

Query: 64  --------------SPCFRS------------------TTRNVISDCAHLGALDQAKWIQ 123
                         + CF                    T  +V++ CAHLG+L+  +WI+
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391

Query: 124 NYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINALECMEIHG 183
            Y+DKN     + V NALIDMY KCG  E  ++VF    +++  +WT M+  L     + 
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGL----ANN 451

Query: 184 GLVEEGRRIFHSLTNDEALEMIEAMPFAPNAIIWGSLMAACHVHG 194
           G  +E  ++F  +         + M   P+ I +  +++AC+  G
Sbjct: 452 GQGQEAIKVFFQM---------QDMSIQPDDITYLGVLSACNHSG 483

BLAST of CSPI03G13050 vs. Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.4e-21
Identity = 59/198 (29.80%), Postives = 95/198 (47.98%), Query Frame = 1

Query: 6   RSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMS---- 65
           R+A++T  A CG +  A  L+E +  +  +   AM+SG A+ G+  +A NVF  M     
Sbjct: 177 RTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGV 236

Query: 66  PCFRSTTRNVISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGRE 125
                   +V+S C  LGALDQ +W  +Y+++N     + +   L+D+Y KCG  E   E
Sbjct: 237 KVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAME 296

Query: 126 VFGKTPKKNAISWTIMINALECMEIHGGLVEEGRRIFHSLTNDEALEMIEAMPFAPNAII 185
           VF    +KN  +W+  +N L       G  E+   +F  +  D            PNA+ 
Sbjct: 297 VFWGMEEKNVYTWSSALNGLAM----NGFGEKCLELFSLMKQDGV---------TPNAVT 356

Query: 186 WGSLMAACHVHGETELGE 200
           + S++  C V G  + G+
Sbjct: 357 FVSVLRGCSVVGFVDEGQ 361

BLAST of CSPI03G13050 vs. Swiss-Prot
Match: PP343_ARATH (Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E7 PE=3 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 4.4e-21
Identity = 56/167 (33.53%), Postives = 89/167 (53.29%), Query Frame = 1

Query: 2   DPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMS 61
           D RL +A +TMY  CG + L+  L+E    + +V+ ++M+SG A+ G   +  N+ +QM 
Sbjct: 297 DERLTAAFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMR 356

Query: 62  P----CFRSTTRNVISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPE 121
                    T   ++S C +   L  A  + + + K GF   + + NALIDMY KCGS  
Sbjct: 357 KEGIEANSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLS 416

Query: 122 GGREVFGKTPKKNAISWTIMINAL-------ECMEIHGGLVEEGRRI 158
             REVF +  +K+ +SW+ MINA        E +EI  G+++ G  +
Sbjct: 417 AAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEV 463

BLAST of CSPI03G13050 vs. TrEMBL
Match: A0A0A0L5H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146580 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 3.3e-116
Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM
Sbjct: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60

Query: 61  SPCFRSTTRNVISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGR 120
           SPCFRSTTRNVISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGR
Sbjct: 61  SPCFRSTTRNVISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGR 120

Query: 121 EVFGKTPKKNAISWTIMINALECMEIHGGLVEEGRRIFHSLTNDEALEMIEAMPFAPNAI 180
           EVFGKTPKKNAISWTIMINALECMEIHGGL EEGRRIFHSLTNDEALEMIEAMPFAPNAI
Sbjct: 121 EVFGKTPKKNAISWTIMINALECMEIHGGLAEEGRRIFHSLTNDEALEMIEAMPFAPNAI 180

Query: 181 IWGSLMAACHVHGETELGEFAAK 204
           IWGSLMAACHVHGETELGEFAAK
Sbjct: 181 IWGSLMAACHVHGETELGEFAAK 203

BLAST of CSPI03G13050 vs. TrEMBL
Match: D7T700_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03630 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-57
Identity = 132/293 (45.05%), Postives = 165/293 (56.31%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           +DP L+SAL+TMYASCG+MDLA +L+EK++PK +V  TAMV+G +K G+I +AR+VF+QM
Sbjct: 256 VDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQM 315

Query: 61  SP----CFRS-------------------------------TTRNVISDCAHLGALDQAK 120
                 C+ +                               T  +VI+ CAHLGALDQAK
Sbjct: 316 VKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAK 375

Query: 121 WIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWT---------- 180
           WI  +VDKNGFG AL +NNALI+MY KCGS E  R +F K P+KN ISWT          
Sbjct: 376 WIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHG 435

Query: 181 ----------------IMINALECMEI-----HGGLVEEGRRIFHSLTND---------- 204
                           I  N +  + +     H GLVEEGR+IF+S+ N+          
Sbjct: 436 DAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHY 495

BLAST of CSPI03G13050 vs. TrEMBL
Match: W9R134_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005425 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.6e-55
Identity = 130/292 (44.52%), Postives = 157/292 (53.77%), Query Frame = 1

Query: 2   DPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMS 61
           D RLRSAL+ MYASCG+MD+A +L++K+S K +VV TAM+SG +K G++ DAR +FDQM 
Sbjct: 258 DSRLRSALVAMYASCGSMDIAQELFDKMSSKNLVVSTAMISGYSKLGRLQDARLIFDQMV 317

Query: 62  P------------------------CFRS-----------TTRNVISDCAHLGALDQAKW 121
                                     F             T  +VIS CAHLGALD+A W
Sbjct: 318 EKDLVSWSAMIAGYAESDWPQEALRLFNDMQLLGIRPDQITMLSVISACAHLGALDKANW 377

Query: 122 IQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINA------ 181
           +  Y D+NGFG AL V+NAL+DMY KCGS E  REVF K  +KN ISWT MINA      
Sbjct: 378 MHIYADRNGFGGALPVSNALVDMYAKCGSLERAREVFEKMQRKNVISWTSMINACAMHGD 437

Query: 182 -LECMEI------------------------HGGLVEEGRRIFHSLTND----------- 204
            +  + +                        H GLVEEGR IF S+ N+           
Sbjct: 438 AVNALSLFHRMKDKNVEPNSVTFVGVLYACSHTGLVEEGRNIFASMINEYNIAPKHEHYG 497

BLAST of CSPI03G13050 vs. TrEMBL
Match: G7K3N9_MEDTR (Organelle transcript processing protein, putative OS=Medicago truncatula GN=MTR_5g006420 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53
Identity = 125/293 (42.66%), Postives = 158/293 (53.92%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           +D  L++ALI MYA+CGAMDLA  +Y+ +S K+++V TAM+SG AK G + DAR +FDQM
Sbjct: 255 IDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQM 314

Query: 61  SP----CFRS-------------------------------TTRNVISDCAHLGALDQAK 120
                 C+ +                               T  +VIS C+H+GAL QA 
Sbjct: 315 IERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQAN 374

Query: 121 WIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINAL---- 180
           WI  YVD++GFG+ALSVNNALIDMY KCG+    REVF   P+KN ISW+ MINA     
Sbjct: 375 WIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHG 434

Query: 181 ----------ECMEI-----------------HGGLVEEGRRIFHSLTND---------- 204
                        E+                 H GLVEEG ++F S+ N+          
Sbjct: 435 NADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHY 494

BLAST of CSPI03G13050 vs. TrEMBL
Match: A0A0B0NLW2_GOSAR (Pentatricopeptide repeat-containing-like protein OS=Gossypium arboreum GN=F383_05089 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.4e-53
Identity = 124/293 (42.32%), Postives = 153/293 (52.22%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           +D  LR AL+TMYASCG MD+A  LY+++ PK +VV TAMVSG ++ G++ DAR +FDQM
Sbjct: 250 IDAHLRCALVTMYASCGCMDMAQQLYDQMKPKNVVVSTAMVSGYSRHGRVKDARLIFDQM 309

Query: 61  SP------------------------CFRS-----------TTRNVISDCAHLGALDQAK 120
                                      F+            T  +VIS CA+LG LD+AK
Sbjct: 310 VEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAK 369

Query: 121 WIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINALECME 180
           WI  Y DKNGFG +L +NNALIDMY KCGS E  R VF K   +N ISWT MINA     
Sbjct: 370 WIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHG 429

Query: 181 -------------------------------IHGGLVEEGRRIFHSLTND---------- 204
                                           H GLVE+GR+IF S+ N+          
Sbjct: 430 DANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHY 489

BLAST of CSPI03G13050 vs. TAIR10
Match: AT4G14820.1 (AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 135.2 bits (339), Expect = 4.6e-32
Identity = 78/234 (33.33%), Postives = 117/234 (50.00%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MD  L +AL+TMYA  G MD+A + + K+S + + V TAMVSG +K G++ DA+ +FDQ 
Sbjct: 245 MDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQT 304

Query: 61  SP----CFRSTTR-------------------------------NVISDCAHLGALDQAK 120
                 C+ +                                  +VIS CA+LG LD+AK
Sbjct: 305 EKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAK 364

Query: 121 WIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINALECME 180
           W+ + +  NG    LS+NNALI+MY KCG  +  R+VF K P++N +SW+ MINAL    
Sbjct: 365 WVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINAL---S 424

Query: 181 IHGGLVEEGRRIFHSLTNDEALEMIEAMPFAPNAIIWGSLMAACHVHGETELGE 200
           +HG    +   +F  +  +            PN + +  ++  C   G  E G+
Sbjct: 425 MHGE-ASDALSLFARMKQENV---------EPNEVTFVGVLYGCSHSGLVEEGK 465

BLAST of CSPI03G13050 vs. TAIR10
Match: AT3G12770.1 (AT3G12770.1 mitochondrial editing factor 22)

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-31
Identity = 79/261 (30.27%), Postives = 130/261 (49.81%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           ++P L  +L TMYA CG +  A  L++K+    +++  AM+SG AK G   +A ++F +M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 61  -SPCFRSTTRNV---ISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSP 120
            +   R  T ++   IS CA +G+L+QA+ +  YV ++ +   + +++ALIDM+ KCGS 
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374

Query: 121 EGGREVFGKTPKKNAISWTIMI-------NALECMEI----------------------- 180
           EG R VF +T  ++ + W+ MI        A E + +                       
Sbjct: 375 EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434

Query: 181 -HGGLVEEGRRIFHSLTN-----------------------DEALEMIEAMPFAPNAIIW 204
            H G+V EG   F+ + +                       D+A E+I+ MP  P   +W
Sbjct: 435 NHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494

BLAST of CSPI03G13050 vs. TAIR10
Match: AT3G15930.1 (AT3G15930.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-24
Identity = 64/225 (28.44%), Postives = 107/225 (47.56%), Query Frame = 1

Query: 4   RLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM--- 63
           RL +AL+  YA+CG MD+A  ++  +  + ++  T++V G  + G +  AR  FDQM   
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331

Query: 64  --------------SPCFRS------------------TTRNVISDCAHLGALDQAKWIQ 123
                         + CF                    T  +V++ CAHLG+L+  +WI+
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391

Query: 124 NYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINALECMEIHG 183
            Y+DKN     + V NALIDMY KCG  E  ++VF    +++  +WT M+  L     + 
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGL----ANN 451

Query: 184 GLVEEGRRIFHSLTNDEALEMIEAMPFAPNAIIWGSLMAACHVHG 194
           G  +E  ++F  +         + M   P+ I +  +++AC+  G
Sbjct: 452 GQGQEAIKVFFQM---------QDMSIQPDDITYLGVLSACNHSG 483

BLAST of CSPI03G13050 vs. TAIR10
Match: AT5G40405.1 (AT5G40405.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-22
Identity = 59/198 (29.80%), Postives = 95/198 (47.98%), Query Frame = 1

Query: 6   RSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMS---- 65
           R+A++T  A CG +  A  L+E +  +  +   AM+SG A+ G+  +A NVF  M     
Sbjct: 177 RTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGV 236

Query: 66  PCFRSTTRNVISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGRE 125
                   +V+S C  LGALDQ +W  +Y+++N     + +   L+D+Y KCG  E   E
Sbjct: 237 KVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAME 296

Query: 126 VFGKTPKKNAISWTIMINALECMEIHGGLVEEGRRIFHSLTNDEALEMIEAMPFAPNAII 185
           VF    +KN  +W+  +N L       G  E+   +F  +  D            PNA+ 
Sbjct: 297 VFWGMEEKNVYTWSSALNGLAM----NGFGEKCLELFSLMKQDGV---------TPNAVT 356

Query: 186 WGSLMAACHVHGETELGE 200
           + S++  C V G  + G+
Sbjct: 357 FVSVLRGCSVVGFVDEGQ 361

BLAST of CSPI03G13050 vs. TAIR10
Match: AT4G31070.1 (AT4G31070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-22
Identity = 56/167 (33.53%), Postives = 89/167 (53.29%), Query Frame = 1

Query: 2   DPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMS 61
           D RL +A +TMY  CG + L+  L+E    + +V+ ++M+SG A+ G   +  N+ +QM 
Sbjct: 286 DERLTAAFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMR 345

Query: 62  P----CFRSTTRNVISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPE 121
                    T   ++S C +   L  A  + + + K GF   + + NALIDMY KCGS  
Sbjct: 346 KEGIEANSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLS 405

Query: 122 GGREVFGKTPKKNAISWTIMINAL-------ECMEIHGGLVEEGRRI 158
             REVF +  +K+ +SW+ MINA        E +EI  G+++ G  +
Sbjct: 406 AAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEV 452

BLAST of CSPI03G13050 vs. NCBI nr
Match: gi|700201840|gb|KGN56973.1| (hypothetical protein Csa_3G146580 [Cucumis sativus])

HSP 1 Score: 425.6 bits (1093), Expect = 4.8e-116
Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM
Sbjct: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60

Query: 61  SPCFRSTTRNVISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGR 120
           SPCFRSTTRNVISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGR
Sbjct: 61  SPCFRSTTRNVISDCAHLGALDQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGR 120

Query: 121 EVFGKTPKKNAISWTIMINALECMEIHGGLVEEGRRIFHSLTNDEALEMIEAMPFAPNAI 180
           EVFGKTPKKNAISWTIMINALECMEIHGGL EEGRRIFHSLTNDEALEMIEAMPFAPNAI
Sbjct: 121 EVFGKTPKKNAISWTIMINALECMEIHGGLAEEGRRIFHSLTNDEALEMIEAMPFAPNAI 180

Query: 181 IWGSLMAACHVHGETELGEFAAK 204
           IWGSLMAACHVHGETELGEFAAK
Sbjct: 181 IWGSLMAACHVHGETELGEFAAK 203

BLAST of CSPI03G13050 vs. NCBI nr
Match: gi|778688466|ref|XP_011652755.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14820 [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 1.6e-90
Identity = 190/298 (63.76%), Postives = 194/298 (65.10%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM
Sbjct: 124 MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 183

Query: 61  SP---CFRS------------------------------------TTRNVISDCAHLGAL 120
                C+ +                                       NVISDCAHLGAL
Sbjct: 184 VEDLICWSAMISGXTVSDYPQEACIIXRKXQQLEMKPDVVTMLXINNXNVISDCAHLGAL 243

Query: 121 DQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINAL 180
           DQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINAL
Sbjct: 244 DQAKWIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINAL 303

Query: 181 ------------------ECME-------------IHGGLVEEGRRIFHSLTND------ 204
                             E +E              HGGL EEGRRIFHSLTN+      
Sbjct: 304 XMHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLAEEGRRIFHSLTNEYGISPK 363

BLAST of CSPI03G13050 vs. NCBI nr
Match: gi|225432698|ref|XP_002278762.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera])

HSP 1 Score: 230.7 bits (587), Expect = 2.3e-57
Identity = 132/293 (45.05%), Postives = 165/293 (56.31%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           +DP L+SAL+TMYASCG+MDLA +L+EK++PK +V  TAMV+G +K G+I +AR+VF+QM
Sbjct: 256 VDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQM 315

Query: 61  SP----CFRS-------------------------------TTRNVISDCAHLGALDQAK 120
                 C+ +                               T  +VI+ CAHLGALDQAK
Sbjct: 316 VKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAK 375

Query: 121 WIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWT---------- 180
           WI  +VDKNGFG AL +NNALI+MY KCGS E  R +F K P+KN ISWT          
Sbjct: 376 WIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHG 435

Query: 181 ----------------IMINALECMEI-----HGGLVEEGRRIFHSLTND---------- 204
                           I  N +  + +     H GLVEEGR+IF+S+ N+          
Sbjct: 436 DAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHY 495

BLAST of CSPI03G13050 vs. NCBI nr
Match: gi|703097553|ref|XP_010096146.1| (hypothetical protein L484_005425 [Morus notabilis])

HSP 1 Score: 222.2 bits (565), Expect = 8.0e-55
Identity = 130/292 (44.52%), Postives = 157/292 (53.77%), Query Frame = 1

Query: 2   DPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMS 61
           D RLRSAL+ MYASCG+MD+A +L++K+S K +VV TAM+SG +K G++ DAR +FDQM 
Sbjct: 258 DSRLRSALVAMYASCGSMDIAQELFDKMSSKNLVVSTAMISGYSKLGRLQDARLIFDQMV 317

Query: 62  P------------------------CFRS-----------TTRNVISDCAHLGALDQAKW 121
                                     F             T  +VIS CAHLGALD+A W
Sbjct: 318 EKDLVSWSAMIAGYAESDWPQEALRLFNDMQLLGIRPDQITMLSVISACAHLGALDKANW 377

Query: 122 IQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINA------ 181
           +  Y D+NGFG AL V+NAL+DMY KCGS E  REVF K  +KN ISWT MINA      
Sbjct: 378 MHIYADRNGFGGALPVSNALVDMYAKCGSLERAREVFEKMQRKNVISWTSMINACAMHGD 437

Query: 182 -LECMEI------------------------HGGLVEEGRRIFHSLTND----------- 204
            +  + +                        H GLVEEGR IF S+ N+           
Sbjct: 438 AVNALSLFHRMKDKNVEPNSVTFVGVLYACSHTGLVEEGRNIFASMINEYNIAPKHEHYG 497

BLAST of CSPI03G13050 vs. NCBI nr
Match: gi|694388278|ref|XP_009369855.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g14820-like [Pyrus x bretschneideri])

HSP 1 Score: 219.9 bits (559), Expect = 4.0e-54
Identity = 129/293 (44.03%), Postives = 157/293 (53.58%), Query Frame = 1

Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           +D  L+SALI MYA  G+MDLA  L++K S K  VV TAMVSG +K G++ DAR +FDQ+
Sbjct: 257 VDSHLQSALIAMYAGSGSMDLAQQLFDKTSQKNFVVATAMVSGYSKLGRVEDARLIFDQI 316

Query: 61  SP----CFRS-------------------------------TTRNVISDCAHLGALDQAK 120
                 C+ +                               T  +VIS C HLGALDQAK
Sbjct: 317 VEKDLVCWSAMISGYAESDQPQEALRLFAEMEASGLRPDPVTMLSVISACGHLGALDQAK 376

Query: 121 WIQNYVDKNGFGKALSVNNALIDMYVKCGSPEGGREVFGKTPKKNAISWTIMINAL---- 180
           W+  YVDKNGFG+ LSVNNALIDMY KCG+ E   EVF    ++N ISWT MI+A     
Sbjct: 377 WVHLYVDKNGFGRVLSVNNALIDMYAKCGNLEKATEVFENMRRRNVISWTTMISAFAIHG 436

Query: 181 --------------ECME-------------IHGGLVEEGRRIFHSLTND---------- 204
                         E  E              H GLVEEGRR+F S+ ++          
Sbjct: 437 EASNALNFFNQMKDENFEPNGVTFVGVLYACSHAGLVEEGRRVFESMIDEYNITPKHEHY 496

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP311_ARATH8.1e-3133.33Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN... [more]
PP224_ARATH6.8e-3030.27Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN... [more]
PP235_ARATH6.2e-2328.44Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th... [more]
PP410_ARATH3.4e-2129.80Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis th... [more]
PP343_ARATH4.4e-2133.53Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A0A0L5H9_CUCSA3.3e-11699.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146580 PE=4 SV=1[more]
D7T700_VITVI1.6e-5745.05Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03630 PE=4 SV=... [more]
W9R134_9ROSA5.6e-5544.52Uncharacterized protein OS=Morus notabilis GN=L484_005425 PE=4 SV=1[more]
G7K3N9_MEDTR1.1e-5342.66Organelle transcript processing protein, putative OS=Medicago truncatula GN=MTR_... [more]
A0A0B0NLW2_GOSAR1.4e-5342.32Pentatricopeptide repeat-containing-like protein OS=Gossypium arboreum GN=F383_0... [more]
Match NameE-valueIdentityDescription
AT4G14820.14.6e-3233.33 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G12770.13.9e-3130.27 mitochondrial editing factor 22[more]
AT3G15930.13.5e-2428.44 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G40405.11.9e-2229.80 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G31070.12.5e-2233.53 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|700201840|gb|KGN56973.1|4.8e-11699.51hypothetical protein Csa_3G146580 [Cucumis sativus][more]
gi|778688466|ref|XP_011652755.1|1.6e-9063.76PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g... [more]
gi|225432698|ref|XP_002278762.1|2.3e-5745.05PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera... [more]
gi|703097553|ref|XP_010096146.1|8.0e-5544.52hypothetical protein L484_005425 [Morus notabilis][more]
gi|694388278|ref|XP_009369855.1|4.0e-5444.03PREDICTED: pentatricopeptide repeat-containing protein At4g14820-like [Pyrus x b... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005488 binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G13050.1CSPI03G13050.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 7..28
score: 0.65coord: 35..60
score: 0.0024coord: 104..125
score: 0
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 36..60
score: 2.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..203
score: 9.7
NoneNo IPR availablePANTHERPTHR24015:SF581SUBFAMILY NOT NAMEDcoord: 1..203
score: 9.7

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G13050Watermelon (97103) v2cpiwmbB239
CSPI03G13050Watermelon (97103) v2cpiwmbB266
CSPI03G13050Wax gourdcpiwgoB252
CSPI03G13050Wax gourdcpiwgoB349
CSPI03G13050Wild cucumber (PI 183967)cpicpiB145
CSPI03G13050Cucumber (Gy14) v1cgycpiB355
CSPI03G13050Cucurbita maxima (Rimu)cmacpiB255
CSPI03G13050Cucurbita maxima (Rimu)cmacpiB359
CSPI03G13050Cucurbita maxima (Rimu)cmacpiB368
CSPI03G13050Cucurbita maxima (Rimu)cmacpiB903
CSPI03G13050Cucurbita moschata (Rifu)cmocpiB243
CSPI03G13050Cucurbita moschata (Rifu)cmocpiB352
CSPI03G13050Cucurbita moschata (Rifu)cmocpiB358
CSPI03G13050Cucurbita moschata (Rifu)cmocpiB883
CSPI03G13050Melon (DHL92) v3.5.1cpimeB186
CSPI03G13050Melon (DHL92) v3.5.1cpimeB230
CSPI03G13050Watermelon (Charleston Gray)cpiwcgB185
CSPI03G13050Watermelon (Charleston Gray)cpiwcgB226
CSPI03G13050Watermelon (Charleston Gray)cpiwcgB255
CSPI03G13050Watermelon (97103) v1cpiwmB189
CSPI03G13050Watermelon (97103) v1cpiwmB231
CSPI03G13050Watermelon (97103) v1cpiwmB281
CSPI03G13050Cucurbita pepo (Zucchini)cpecpiB312
CSPI03G13050Cucurbita pepo (Zucchini)cpecpiB611
CSPI03G13050Bottle gourd (USVL1VR-Ls)cpilsiB149
CSPI03G13050Bottle gourd (USVL1VR-Ls)cpilsiB177
CSPI03G13050Melon (DHL92) v3.6.1cpimedB176
CSPI03G13050Melon (DHL92) v3.6.1cpimedB224
CSPI03G13050Cucumber (Gy14) v2cgybcpiB317
CSPI03G13050Silver-seed gourdcarcpiB0120
CSPI03G13050Silver-seed gourdcarcpiB0261
CSPI03G13050Silver-seed gourdcarcpiB0355
CSPI03G13050Silver-seed gourdcarcpiB0884
CSPI03G13050Cucumber (Chinese Long) v3cpicucB195