CSPI02G24950 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G24950
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Mitochondrial transcription termination factor family protein
Location	Chr2 : 21354572 .. 21359659 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGGTTATGTTATGTGGTTGTGGCTTTAGGCTACAAGCAAAGGACACGAAGATTGGTCTCTTAGTGTGAACATACTCTGTGGTTCGCCCTTCTTCTTCTTCAATCTCCGCCCCACAATCTCAACTCTAAATAAGCTGTTCACTTCCAATCCCTCTAATTTCAGGTACAATTCCTCCAATTTCATCTCCATAATCTGTCTGCATTTCTTTCATTAATTTTACTTCTGCTGGAATCCTTGTTTCGTTTTGTATAACGTACCACCTTTTATTAATTGGACTTACTTAACTGTTTCTTTTTCGCATTCGGTTTTGATCGGAATTCAGTTCAATTAAGAGAATATTCATATATATGCCCCCTTGAGCTTCTGATCCTATTCTGAACAACCAGTTCAACTCTGTACCTGTATACTGCCGATACTACCTTATTGAAGATGATATCATATGATTCACTTCTGATCGTTGAGAAAGACATTGGTTGAAATTTTTGCTGAATGATATAATAAAAAACGTAGTGGCTGCATTGTTTGGAAGATCATGTCAGGTTGTGCAGTAACTTCTTTTTAACATGCTGGAGTATTCGCTATTCGTTAAACGACATCTTGACCATGGGATAATCCCTAGATCGGTAATAATAATAATCAAGCATGTGATTTTAAAATAATCAAGCATGTAATTTTAAAATGAAAATTCAAATTAAGGTGGAGAGTAAAATACCACGGATTGAAGTCGAAATTTCCATAATGGGCTACAATGAGTTTTTTCCTAGTCTCATGAGTAATTCTGGTTCTTTGTGTGAATGACCCATGAATGTGATTGAACTCAATTACCAAATTCAATGACTGCATATCAAATCTTCTTTAAGAGGATCTCAGATTCTCAACCACTTTTGGTTCACTCTTCATGTACTTATGTTTTTTTTGTTTCCATGAATCTTTTGAAAGCTCTATTTTGAGCATGGTAACCAATCTTACCTGTGGGAACTGAATTTGAAGAGATCCTAGTTAGCCACCTGTCTGCATAGGGTTGCCTATTATTTTGTGACAGCATGTTATTTCGGAATTCAAAACTTCGCACTCTTGAATGATTTCACTATAGCCTTCAGTTAAAAATATTTTTGTGGGAGCATCTATTGTTATATCTATCTGGAGGCATACTTGTGAAACTTTAAGTTCTTGTTGAGGCCTTTCTATCTACTCAGTTCTTGTTGGATTGTCCTTTATTCCAATTTCCGGTGACTTTCTTGATCAAAGTCCTCTTCTTCTCTTGAACTCAGAACTTGGATAAAGCTGACCATCTCAATAGACTAAGACATAATTTTGGGAGGAATTTTGTCTACTACCTCGTTGATCAACTGTAATTGGTAGTAAGGCTATTTAAAAAATATTTTTGTTAGACGTAATTATAAAGAAAATTGCATCAAATGACAAAAACATTTAGAAAAAAACAGATCATGACACTTATTTTTTGCATATTGTGAATATGGCAAAATTAGTGATAGCGGCCATCAGGTGGTAATCATAGGGTTATCGGCTTTTAAATTTGTTACTTTTGCAATTTAAAAATGTAGTGACATAAGTCTTATTATCATAATTTATTTTGTTATTTTTGCAAGGGCCCCTAATTATAACTTGAAAACTCTGTCTTTGATAGAACACATCTTTGCATTAACTTGCTTGGATCCTCTCCATATTTGAGTGAAACTCATTATTGGTTCAAATAAAATGTTTTAATAAAATCTAGAAATTCTTTGATGCTCAAATGTTGTAAAATCAGGTGGGATGTCCCGTGACATAAGTCAAGGTTCATGTAAGCTGACCTAGACACTCACATGTATCAAAAAAGAATTGGAAGAAACTTTTGTGTGAGATGGTACATGCTTTATGAATGGTAAACGTGTTATGATAATCACATTTTTTATAGTTGGTACAGCTGGCTCTAACCAAACTTCTTAATATGCTACAGGGATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTGTGAGTAGCAAATTTTGCCTCTTATAGTTAAATGCTATGGGAATACACATCATAATAGAGAAAATATTAGGTGCTAATGGGACTAATCCCATGTTGGGAAGAGAAAGAACCATAATATACTAGTAAGGACGGATATCTTTATTAATACGAGGTCTTTTAGGTGATTTCAATAATCATACCATTGAGGAGATATGTGAAGGTTTAGTAGGTTTTTTTTTTTTTTTTGCAGGAATGCAATGGGAAATGAGCAAATAATTGTTACATCATTTACTTCATACTTATATTGTTTGCATTGCTCAAATAATGTTTTTATAATTTCTCTTTTTAGGATTTCATAACTTATTCTTAATTCTCAATGCAGCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTTAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAGGTACATTTTCTTTTCAGAATTTCTTATGTTGACTAATGATATTGAACTGTAGCCACAACACTGTATTCATGCATATTAAATTGTTAGAATTAAGAATATAAACGGTCAAACCTTGTACAACAATTCAATGTTCAGAGAAAGATCTTCTTCAACTAAACACATAAGAGTTCGAAATTGTGAAATGGGAAGCAAGACAATTGAATATGTTTAGCGTAATGGAG

mRNA sequence

ATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTTAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAG

Coding sequence (CDS)

ATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTTAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAG

Homology

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BLAST of CSPI02G24950 vs. TrEMBL
Match: A0A0A0LQN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402090 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 5.2e-123
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 1


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWEICSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

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BLAST of CSPI02G24950 vs. TrEMBL
Match: A0A061FJZ4_THECC (Mitochondrial transcription termination factor family protein isoform 1 OS=Theobroma cacao GN=TCM_036345 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 8.1e-76
Identity = 139/217 (64.06%), Postives = 174/217 (80.18%), Query Frame = 1


Query: 3   GMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYP 62
           GM GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P
Sbjct: 80  GMPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSP 139

Query: 63  RKWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGED 122
           +KW I S++Q+++   S+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+
Sbjct: 140 KKWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEE 199

Query: 123 REKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGI 182
           R+K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI
Sbjct: 200 RKKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGI 259

Query: 183 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           +GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 260 KGKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 294

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BLAST of CSPI02G24950 vs. TrEMBL
Match: A0A061FIR9_THECC (Mitochondrial transcription termination factor family protein isoform 2 OS=Theobroma cacao GN=TCM_036345 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.0e-75
Identity = 138/216 (63.89%), Postives = 173/216 (80.09%), Query Frame = 1


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           M GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P+
Sbjct: 1   MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KW I S++Q+++   S+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 61  KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           +K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI+
Sbjct: 121 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 214

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BLAST of CSPI02G24950 vs. TrEMBL
Match: B9MW76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11780g PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.7e-73
Identity = 136/216 (62.96%), Postives = 168/216 (77.78%), Query Frame = 1


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLG+SLASP+ T DSA R  C T    TA  +A C +V+ S     +  +G    +  PR
Sbjct: 1   MLGRSLASPLLTFDSAARSSCVTPDLVTAAPNAACLNVN-SLALPSNVTRGYCTSHFSPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KW I S+ Q ++  FS+ED+KTWEACR+ALS F+F+ EE+DK+LGKAFGH+HSPYWGE R
Sbjct: 61  KWAIQSTAQADNTTFSNEDRKTWEACREALSAFNFNAEEKDKILGKAFGHVHSPYWGEQR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           + +VP  EIV + L+YLR+LGLS DDL KLLKKFPEVLGC+LEQELKTNV++L+K+WGI+
Sbjct: 121 KLEVPKFEIVCETLDYLRSLGLSEDDLFKLLKKFPEVLGCSLEQELKTNVKILEKDWGIK 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSL+ LLLRNPK LGY VDCKGDCIA+CTRCW RF
Sbjct: 181 GKSLQKLLLRNPKALGYNVDCKGDCIAQCTRCWARF 215

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BLAST of CSPI02G24950 vs. TrEMBL
Match: M5VHT9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026991mg PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.1e-71
Identity = 134/216 (62.04%), Postives = 170/216 (78.70%), Query Frame = 1


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSLASP+ T D ATRFC ST     A  +    +VS + +S  ++       +  P+
Sbjct: 1   MLGKSLASPLLTHDCATRFCFSTPDVINAAPNIRLPNVSQNLNSRAYS------PSFSPK 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KW + S+ ++E+   +DE++KTWEAC++A+S FS ++EE DK+LGKAFG +HSPYWGE R
Sbjct: 61  KWVLHSTAEIENTALTDEERKTWEACQEAISAFSITIEEGDKILGKAFGLVHSPYWGEIR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           +K+VP IEIV + L+YLR+L LS+DDL KLLKKFPEVLGCNLE ELKTNVQ+L+KEWGI+
Sbjct: 121 KKEVPTIEIVKEKLDYLRSLSLSDDDLCKLLKKFPEVLGCNLENELKTNVQVLEKEWGIK 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSLRNLLLRNP+VLGY VDCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLRNLLLRNPRVLGYNVDCKGDCMAQCTRCWVRF 210

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BLAST of CSPI02G24950 vs. TAIR10
Match: AT4G09620.1 (AT4G09620.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 251.1 bits (640), Expect = 6.1e-67
Identity = 125/220 (56.82%), Postives = 164/220 (74.55%), Query Frame = 1


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVC--SHVSFSCHSAKHTIKGVRRQNPY 63
           M+G SLASP++T+ SA       +C   +  D V   + +    +S+ H + G  R + Y
Sbjct: 3   MVGNSLASPLATLGSA-------KCFRHSAVDLVTYTNVLPLRLNSSYHGVNGGVRTSSY 62

Query: 64  PR-KWEI-CSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYW 123
            R KW + CS+TQVE+   S+ED   WE C++ALS F FSVEE+DK+LGKAFGHIHSPYW
Sbjct: 63  SRSKWIVFCSTTQVET---SNEDPNIWEECKEALSCFDFSVEEKDKILGKAFGHIHSPYW 122

Query: 124 GEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKE 183
            E+R K+ P +E +N ILE+LR+LGLS++DL K++KKFPEVLGC+LE+E+K N+ +L+ +
Sbjct: 123 TEERVKENPKVETLNQILEFLRSLGLSDEDLHKVMKKFPEVLGCSLEEEMKPNIGILENQ 182

Query: 184 WGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           WGI GK LRNLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 183 WGITGKQLRNLLLRNPKVLGYNVDCKGDCVAQCTRCWVRF 212

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BLAST of CSPI02G24950 vs. TAIR10
Match: AT4G02990.1 (AT4G02990.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 48.5 bits (114), Expect = 6.0e-06
Identity = 21/68 (30.88%), Postives = 45/68 (66.18%), Query Frame = 1


Query: 132 IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLL 191
           I+  ++EYL  LG+     ++L++K P +LG  L+  +K NVQ+L +++ ++  SL +++
Sbjct: 286 IIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQIL-QDFNVRETSLPSII 345

Query: 192 LRNPKVLG 200
            + P+++G
Sbjct: 346 AQYPEIIG 352

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BLAST of CSPI02G24950 vs. NCBI nr
Match: gi|778672961|ref|XP_011649898.1| (PREDICTED: uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus])

HSP 1 Score: 454.9 bits (1169), Expect = 7.9e-125
Identity = 218/219 (99.54%), Postives = 218/219 (99.54%), Query Frame = 1


Query: 1   MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNP 60
           MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNP
Sbjct: 1   MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNP 60

Query: 61  YPRKWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWG 120
           YPRKWEICSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWG
Sbjct: 61  YPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWG 120

Query: 121 EDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEW 180
           EDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEW
Sbjct: 121 EDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEW 180

Query: 181 GIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 219

[Close]

BLAST of CSPI02G24950 vs. NCBI nr
Match: gi|449441758|ref|XP_004138649.1| (PREDICTED: uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 7.4e-123
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 1


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWEICSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of CSPI02G24950 vs. NCBI nr
Match: gi|659081221|ref|XP_008441217.1| (PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo])

HSP 1 Score: 437.6 bits (1124), Expect = 1.3e-119
Identity = 210/216 (97.22%), Postives = 213/216 (98.61%), Query Frame = 1


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWE+CSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           +KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of CSPI02G24950 vs. NCBI nr
Match: gi|590603288|ref|XP_007019968.1| (Mitochondrial transcription termination factor family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 291.6 bits (745), Expect = 1.2e-75
Identity = 139/217 (64.06%), Postives = 174/217 (80.18%), Query Frame = 1


Query: 3   GMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYP 62
           GM GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P
Sbjct: 80  GMPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSP 139

Query: 63  RKWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGED 122
           +KW I S++Q+++   S+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+
Sbjct: 140 KKWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEE 199

Query: 123 REKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGI 182
           R+K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI
Sbjct: 200 RKKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGI 259

Query: 183 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           +GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 260 KGKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 294

[Close]

BLAST of CSPI02G24950 vs. NCBI nr
Match: gi|590603292|ref|XP_007019969.1| (Mitochondrial transcription termination factor family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 289.3 bits (739), Expect = 5.8e-75
Identity = 138/216 (63.89%), Postives = 173/216 (80.09%), Query Frame = 1


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           M GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P+
Sbjct: 1   MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KW I S++Q+++   S+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 61  KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           +K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI+
Sbjct: 121 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 214

The following BLAST results are available for this feature:

BLAST of CSPI02G24950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G24950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQN8_CUCSA	5.2e-123	99.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402090 PE=4 SV=1	[more]
A0A061FJZ4_THECC	8.1e-76	64.06	Mitochondrial transcription termination factor family protein isoform 1 OS=Theob...	[more]
A0A061FIR9_THECC	4.0e-75	63.89	Mitochondrial transcription termination factor family protein isoform 2 OS=Theob...	[more]
B9MW76_POPTR	1.7e-73	62.96	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11780g PE=4 SV=1	[more]
M5VHT9_PRUPE	2.1e-71	62.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026991mg PE=4 SV=1	[more]

BLAST of CSPI02G24950 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09620.1	6.1e-67	56.82	Mitochondrial transcription termination factor family protein	[more]
AT4G02990.1	6.0e-06	30.88	Mitochondrial transcription termination factor family protein	[more]

BLAST of CSPI02G24950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778672961\|ref\|XP_011649898.1\|	7.9e-125	99.54	PREDICTED: uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus]	[more]
gi\|449441758\|ref\|XP_004138649.1\|	7.4e-123	99.54	PREDICTED: uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus]	[more]
gi\|659081221\|ref\|XP_008441217.1\|	1.3e-119	97.22	PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo]	[more]
gi\|590603288\|ref\|XP_007019968.1\|	1.2e-75	64.06	Mitochondrial transcription termination factor family protein isoform 1 [Theobro...	[more]
gi\|590603292\|ref\|XP_007019969.1\|	5.8e-75	63.89	Mitochondrial transcription termination factor family protein isoform 2 [Theobro...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003690	MTERF
IPR003690	MTERF
IPR003690	MTERF

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006355	regulation of transcription, DNA-templated
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding
GO:0003690	double-stranded DNA binding
GO:0003690	double-stranded DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0042646	plastid nucleoid
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G24950.3	CSPI02G24950.3	mRNA
CSPI02G24950.1	CSPI02G24950.1	mRNA
CSPI02G24950.2	CSPI02G24950.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 134..197 score: 1.
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 148..180 score: 0.
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 66..215 score: 8.9
None	No IPR available	PANTHER	PTHR13068:SF26	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 66..215 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G24950	Cla011910	Watermelon (97103) v1	cpiwmB167
CSPI02G24950	Csa2G402090	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G24950	MELO3C008119	Melon (DHL92) v3.5.1	cpimeB116
CSPI02G24950	ClCG11G008190	Watermelon (Charleston Gray)	cpiwcgB112
CSPI02G24950	Lsi03G004620	Bottle gourd (USVL1VR-Ls)	cpilsiB113
CSPI02G24950	MELO3C008119.2	Melon (DHL92) v3.6.1	cpimedB112
CSPI02G24950	CsaV3_2G033470	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G24950	Cla97C11G215380	Watermelon (97103) v2	cpiwmbB106
CSPI02G24950	Bhi04G002055	Wax gourd	cpiwgoB161
CSPI02G24950	Cucsa.088330	Cucumber (Gy14) v1	cgycpiB093
CSPI02G24950	CmoCh15G000300	Cucurbita moschata (Rifu)	cmocpiB271
CSPI02G24950	Cp4.1LG13g11600	Cucurbita pepo (Zucchini)	cpecpiB168
CSPI02G24950	CsGy2G024680	Cucumber (Gy14) v2	cgybcpiB057

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G24950	Cucurbita maxima (Rimu)	cmacpiB281
CSPI02G24950	Cucurbita maxima (Rimu)	cmacpiB702
CSPI02G24950	Cucurbita moschata (Rifu)	cmocpiB695
CSPI02G24950	Cucurbita pepo (Zucchini)	cpecpiB385
CSPI02G24950	Silver-seed gourd	carcpiB0018
CSPI02G24950	Silver-seed gourd	carcpiB1119