Cucsa.088330 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.088330
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Mitochondrial transcription termination factor family protein
Location	scaffold00888 : 678414 .. 686791 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCAATCCCTCTAATTTCAGGTACAATTCCTCCAATTTCATCTCCATAATCTGTCTGCATTTCTTTCATTAATTTTACTTCTGCTGGAATCCTTGTTTCGTTTTGTATAACGTACCACCTTTTATTAATTGGACTTACTTAACTGTTTCTTTTTCGCATTCGGTTTTGATCGGAATTCAGTTCAATTAAGAGAATATTCATATATATGCCCCCTTGAGCTTCTGATCCTATTCTGAACAACCAGTTCAACTCTGTACCTGTATACTGCCGATACTACCTTATTGAAGATGATATCATATGATTCACTTCTGATCGTTGAGAAAGACATTGGTTGAAATTTTTGCTGAATGATATAATAAAAAACGTAGTGGCTGCATTGTTTGGAAGATCATGTCAGGTTGTGCAGTAACTTCTTTTTAACATGCTGGAGTATTCGCTATTCGTTAAACGACATCTTGACCATGGGATAATCCCTAGATCGGTAATAATAATAATCAAGCATGTAATTTTAAAATAATCAAGCATGTAATTTTAAAATGAAAATTCTCATTAAGGTGGAGAGTAAAATACCACGGATTGAAGTCGAAATCTCCATAATGGGCTACAATGAGTTTTTTCCTAGTCTCATGAGTAATTCTGGTTCTTTGTGTGAATGACCCATGAATGTGATTGAACTCAATTACCAAATTCAATGACTGCATATCAAATCTCCTTTAAGAGGATCTCAGATTCTCAACCACTTTTGGTTCACTCTTCATGTACTTATGTTTTTTTGTTTCCATGAATCTTTTGAAAGCTCTATTTTGAGCATGGTAACCAATCTTACCTGTGGGAACTGAATTTGAAGAGATCCTAGTTAGCCACCTGTCTGCATAGGGTTGCCTATTATTTTGTGACAGCATGTTATTTCGGAATTCAAAACTTCGCACTCTTGAATGATTTCACTATAGCCTTCAGTTAAAAATATTTTTGTGGGAGCATCTATTGTTATATCTATCTGGAGGCATACTTGTGAAACTTTAAGTTCTTGTTGAGGCCTTTCTATATACTCAGTTCTTGTTGGATTGTCCTTTATTCCAATTTCCGGTGACTTTCTTGATCAAAGTCCTTTTCTTCTCTTGAACTCAGAACTTGGATAAAGCTGACCATCTCAATAGACTAAGACATAATTTTGGGAGGAATTTTGTCTACTACCTCGTTGATCAACTGTAATTGGTAGTAAGGCTATTTAAAAAATATTTTTGTTGGACGTAATTATAAGGAAAATTGCATCAAATGACAAAAACATTTAGAAAAAAACAGATTATGACACCTATTTTTTTGCATATTGTGAATATGGCAAAATTAGTGATAGCAGCCATCAGGTGGTAATCATAGGGTTATCGGCTTTTAAATTTGTTACTTTTGCAATTTAAAAATGTAGTGACATAAGTCTTATTATCATAATTTATTTTGTTATTTTTGCAAGGGCCCCTAATTATAACTTGAAAACTCTGTCTTTGATAGAACACATCTTTGCATTAACTTGCTTGGATCCTCTCCATATTTGAGTGAAACTCATTATTGGTTCAAATAAAATGTTTTAATAAAATCTAGAAATTCTTTGATGCTCAAATGTTGTAAAATCAGGTGGGATGTCCCGTGACATAAGTCAAGGTTCATGTAAGCTGACCTAGACACTCACATGTATCAAAAAAGAATTGGAAGAAACTTTTGTGTGAGATGGTATATGCTTTATGAATGGTAAACGTGTTATGATAATCACATTTTTTATAGTTGGTACAGCTGGCTCTAACCAAACTTCTTAATATGCTACAGGGATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTGTGAGTAGCAAATTTTGCCTCTTATAGTTAAATGCTATGGGAATACACATCATAATAGAGAAAATATTAGGTGCTAATGGGACTAATCCCATGTTGGGAAGAGAAAGAACCATGATATACTAGTAAGGACGGATATCTTTATTAATACAAGGCCTTTTAGGTGATTTCAATAATCATACCATTGAGGAGATATGTGAAGGTTTAGTAGGTTTTTTTTTTTTTTTGCAGGAATGCAATGGGAAATGAGCAAATAATTGTTACATCATTTACTTCATACTTATATTGTTTGCATTGCTCAAATAATGATTTTATAATTTCTCTTTTTAGGATTTCATAACTTATTCTTAATTCTCAATGCAGCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATTCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTAAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAGGTACATTTTCTTTTCAGAATTTCTTATGTTGACTAATGATATTGAACTGTAGCCACAACACTGTATTCATGCATATTAAATTGTTAGAATTAAGAATATAAACGGTCAAACCTTGTACAACAATTCAATGTTCAGAGAAAGATCTTCTTCAACTAAACACATAAGAGTTCGAAATTGTGAAATGGGAAGCAAGACAATTGAATATGTTTAGCGTAATGGAGACTATTACTCGTACTTTCTATTTTTAAACTCTTCACTAGACCCCATTAATTCTAGCAAGAGTTATTGAGTATCTATTTAGTAGAACTTTATATTCCATGATAGTTTTTGAACCTATTTAATTTTAGGTTACTTCAAGGAACCCTTTAAATAGCCTCTAGTTATATAAGTATACATGAAGCTACACATTTCATGTCTTTCTAAATCATGTCTGAAATACCGATTCAGTTATTTGGACCATTGTTTTCATGTTCATAAATGCGTAACCTGTTCCCCTCCTTCTGTTCTCTCTCATTTGTATATTCTTTTAAAATAAAATTATCAAAGTTTTATCTGATGGCTTGAACTGTTAAGAGCATATTTGGAAATAGAGAGCCACTATGTGTGTTTTATTGACTCTTGGCTCAATTCTTCTATGGAAAAATAGCTTCCATACTTCAAACATTTCCGAACGAGTTAGTTTGCGTAAAACAATTGTCCATTCTTGTAAAATAAAAAACAAACAAGTTCTTATACTACAGTGGCTTATAACATATGTTAACTGATTTTTTGTTATTGTAAATGAAGTTTCTTTTACAAAACAACCCACCACAAGTTATTTTTCTAGTTATGCAACTTCTAATTGAGTTTGATACGAGTACAAGCTTGGTGCATAAAGTTTGCGTAGTAGATATAAATTATAATATTCTTTATGCCCTTTGTGCTTTTCTTTTTTTAATGAAAAAGTAATATTACAATAAGAATATTCCTTTTACATATATGTTTTACAAAGAACCGCATGAAACTATTCAATTCCGCGTTTATGGACTAAAAACATGATATCAACCCATCCAAAGTTTGAGCAAAAGTTTATGCACTAGTTTAATATTTTATATTTAATTCCGCGTTTATGCACTAATTTCATATTTTGTATTTCCAGAATTAGTCCCGTTTCATTTCATCAATGAAAAATTTTGTTTAAAAGAAAAACTGTTTGTGCAAAGGCAACATCTTACTGACTTCAGGAAGTAGCATCTTCTTTTCTCCCTGTCTCTAAATGGGCTCCCTAAATGCGACAAAATTCTTGGTTTGTCGTTTTACTTTTACACATACACAATTTATGTTTTCTCTTCAATAAAAGCATATTCTAAAACAATTTTCTTTACTTTTTATCAATTATTTGTAATATCCTTCTCTTTTGCTTCATCATCATCTTGTTCTTTTATTTCTTTTGCAGAGCTATAATGGTTCTCAATCTATGGTTGAATATTCCCAAAAGATAGGTATGCCTGTAATTAAATTTATATTAATTGAATATTTTGTTAAAGAATATTTAGAAGTATGTGTGAATATTAAAAGGACCCCGAAAGAAAAATGGGAGGATAGATGCAGCATTCAGCAAGGCTTCAAAAAGCTGAATATTTGCATAAGAGCTAGGGAGGTGGTTGCCAAAGATCACTTAAATATATTATCAATTAGAAAATTGGACCTCATAAAAAAAATACAACACTGATTTTTATTCCAATTGTAAGCAACACAAGCCACTTAGATATAGTACAACAGAGGTGGGAAACTCAACATAATCAAAAAGAGAGAAAATGCAAGAGAAACCCTTGGCTTCAATATATTGATAGGTAAATAACACCAATCCCATATAGTTGGCCTGGGAGGAAAACTCTTGCAAAATACACTCACCCACAATAAATTATCATCACTAACAAAAGGAATCCTTCTAGAAGAATTCCATAACATAATGAATTTTAAGAAGGAAATCAAGATACTCAAACCGAAAACCCAATTAAGCCTAATGAGTATCTTAACTGGAAGGTTGAAACATCTTGATCAATAACACATTTATATGCCAAATGTGCAATGCTCACTTTGGCATTTTTGTACACATTAATAGTATATAAACATAAATGGAAAATACAAAGAATTAAACGACCTCCAATATATAAAAGAAAATAGTGTAGAAGTAGGGTTGGAAGAGTAGAGTGGAAATTAGGGGCACTTGGGCTTATTGCCATGGGTCCTGAGGCGAGCATAGCAAGGGCAAGCTTGATGGTTGCCGTAAGTGCCCGGCGGGACGCAGTGACACCGACTGCAGCAAGTCCCACAAGCACGCATACATATCTTCTTTCTGAACACTTTGCTGCATCTCCTTGAACATTCACTTTTACAATCTACTCCAAACCA

mRNA sequence

TTCCAATCCCTCTAATTTCAGGGATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATTCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTAAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAGAGCTATAATGGTTCTCAATCTATGGTTGAATATTCCCAAAAGATAGGTATGCCTGtaattaaatttatattaattgaatattttgttaaagaatatttaGAAGTATGTGTGAATATTAAAAGGACCCCGAAAGAAAAATGGGAGGATAGATGCAGCATTCAGCAAGGCTTCAAAAAGCTGAATATTTGCATAAGAGCTAGGGAGGTGGTTGCCAAAGATCACTTAAATATATTATCAATTAGAAAATTGGACCTCATAAAAAAAATACAACACTGATTTTTATTCCAATTGTAAGCAACACAAGCCACTTAGATATAGTACAACAGAGGTGGGAAACTCAACATAATCAAAAAGAGAGAAAATGCAAGAGAAACCCTTGGCTTCAATATATTGATAGGTAAATAACACCAATCCCATATAGTTGGCCTGGGAGGAAAACTCTTGCAAAATACACTCACCCACAATAAATTATCATCACTAACAAAAGGAATCCTTCTAGAAGAATTCCATAACATAATGAATTTTAAGAAGGAAATCAAGATACTCAAACCGAAAACCCAATTAAGCCTAATGAGTATCTTAACTGGAAGGTTGAAACATCTTGATCAATAACACATTTATATGCCAAATGTGCAATGCTCACTTTGGCATTTTTGTACACATTAATAGTATATAAACATAAATGGAAAATACAAAGAATTAAACGACCTCCAATATATAAAAGAAAATAGTGTAGAAGTAGGGTTGGAAGAGTAGAGTGGAAATTAGGGGCACTTGGGCTTATTGCCATGGGTCCTGAGGCGAGCATAGCAAGGGCAAGCTTGATGGTTGCCGTAAGTGCCCGGCGGGACGCAGTGACACCGACTGCAGCAAGTCCCACAAGCACGCATACATATCTTCTTTCTGAACACTTTGCTGCATCTCCTTGAACATTCACTTTTACAATCTACTCCAAACCA

Coding sequence (CDS)

ATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATTCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTAAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAG

Protein sequence

MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF*

Homology

[Close]

BLAST of Cucsa.088330 vs. TrEMBL
Match: A0A0A0LQN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402090 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 1.5e-122
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPR 60
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQN YPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of Cucsa.088330 vs. TrEMBL
Match: A0A061FIR9_THECC (Mitochondrial transcription termination factor family protein isoform 2 OS=Theobroma cacao GN=TCM_036345 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-75
Identity = 139/216 (64.35%), Postives = 174/216 (80.56%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPR 60
           M GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P+
Sbjct: 1   MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 60

Query: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW I S++Q+++  LS+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 61  KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI+
Sbjct: 121 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 214

[Close]

BLAST of Cucsa.088330 vs. TrEMBL
Match: A0A061FJZ4_THECC (Mitochondrial transcription termination factor family protein isoform 1 OS=Theobroma cacao GN=TCM_036345 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-75
Identity = 139/216 (64.35%), Postives = 174/216 (80.56%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPR 60
           M GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P+
Sbjct: 81  MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 140

Query: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW I S++Q+++  LS+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 141 KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 200

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI+
Sbjct: 201 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 260

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 261 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 294

[Close]

BLAST of Cucsa.088330 vs. TrEMBL
Match: B9MW76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11780g PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.7e-73
Identity = 135/216 (62.50%), Postives = 167/216 (77.31%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPR 60
           MLG+SLASP+ T DSA R  C T    TA  +A C +V+ S     +  +G    +  PR
Sbjct: 1   MLGRSLASPLLTFDSAARSSCVTPDLVTAAPNAACLNVN-SLALPSNVTRGYCTSHFSPR 60

Query: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW I S+ Q ++   S+ED+KTWEACR+ALS F+F+ EE+DK+LGKAFGH+HSPYWGE R
Sbjct: 61  KWAIQSTAQADNTTFSNEDRKTWEACREALSAFNFNAEEKDKILGKAFGHVHSPYWGEQR 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           + +VP  EIV + L+YLR+LGLS DDL KLLKKFPEVLGC+LEQELKTNV++L+K+WGI+
Sbjct: 121 KLEVPKFEIVCETLDYLRSLGLSEDDLFKLLKKFPEVLGCSLEQELKTNVKILEKDWGIK 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSL+ LLLRNPK LGY VDCKGDCIA+CTRCW RF
Sbjct: 181 GKSLQKLLLRNPKALGYNVDCKGDCIAQCTRCWARF 215

[Close]

BLAST of Cucsa.088330 vs. TrEMBL
Match: M5VHT9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026991mg PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.1e-72
Identity = 135/216 (62.50%), Postives = 171/216 (79.17%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPR 60
           MLGKSLASP+ T D ATRFC ST     A  +    +VS + +S  ++       +  P+
Sbjct: 1   MLGKSLASPLLTHDCATRFCFSTPDVINAAPNIRLPNVSQNLNSRAYS------PSFSPK 60

Query: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW + S+ ++E+  L+DE++KTWEAC++A+S FS ++EE DK+LGKAFG +HSPYWGE R
Sbjct: 61  KWVLHSTAEIENTALTDEERKTWEACQEAISAFSITIEEGDKILGKAFGLVHSPYWGEIR 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +K+VP IEIV + L+YLR+L LS+DDL KLLKKFPEVLGCNLE ELKTNVQ+L+KEWGI+
Sbjct: 121 KKEVPTIEIVKEKLDYLRSLSLSDDDLCKLLKKFPEVLGCNLENELKTNVQVLEKEWGIK 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSLRNLLLRNP+VLGY VDCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLRNLLLRNPRVLGYNVDCKGDCMAQCTRCWVRF 210

[Close]

BLAST of Cucsa.088330 vs. TAIR10
Match: AT4G09620.1 (AT4G09620.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 252.7 bits (644), Expect = 2.1e-67
Identity = 126/220 (57.27%), Postives = 165/220 (75.00%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVC--SHVSFSCHSAKHTIKGVRRQNSY 60
           M+G SLASP++T+ SA       +C   +  D V   + +    +S+ H + G  R +SY
Sbjct: 3   MVGNSLASPLATLGSA-------KCFRHSAVDLVTYTNVLPLRLNSSYHGVNGGVRTSSY 62

Query: 61  PR-KWEI-CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYW 120
            R KW + CS+TQVE+   S+ED   WE C++ALS F FSVEE+DK+LGKAFGHIHSPYW
Sbjct: 63  SRSKWIVFCSTTQVET---SNEDPNIWEECKEALSCFDFSVEEKDKILGKAFGHIHSPYW 122

Query: 121 GEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKE 180
            E+R K+ P +E +N ILE+LR+LGLS++DL K++KKFPEVLGC+LE+E+K N+ +L+ +
Sbjct: 123 TEERVKENPKVETLNQILEFLRSLGLSDEDLHKVMKKFPEVLGCSLEEEMKPNIGILENQ 182

Query: 181 WGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           WGI GK LRNLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 183 WGITGKQLRNLLLRNPKVLGYNVDCKGDCVAQCTRCWVRF 212

[Close]

BLAST of Cucsa.088330 vs. NCBI nr
Match: gi|449441758|ref|XP_004138649.1| (PREDICTED: uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus])

HSP 1 Score: 446.8 bits (1148), Expect = 2.1e-122
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPR 60
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQN YPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of Cucsa.088330 vs. NCBI nr
Match: gi|778672961|ref|XP_011649898.1| (PREDICTED: uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus])

HSP 1 Score: 446.8 bits (1148), Expect = 2.1e-122
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPR 60
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQN YPR
Sbjct: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63

Query: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 64  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 219

[Close]

BLAST of Cucsa.088330 vs. NCBI nr
Match: gi|659081221|ref|XP_008441217.1| (PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo])

HSP 1 Score: 436.0 bits (1120), Expect = 3.8e-119
Identity = 210/216 (97.22%), Postives = 213/216 (98.61%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPR 60
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQN YPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWE+CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of Cucsa.088330 vs. NCBI nr
Match: gi|590603292|ref|XP_007019969.1| (Mitochondrial transcription termination factor family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 291.2 bits (744), Expect = 1.5e-75
Identity = 139/216 (64.35%), Postives = 174/216 (80.56%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPR 60
           M GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P+
Sbjct: 1   MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 60

Query: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW I S++Q+++  LS+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 61  KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI+
Sbjct: 121 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 214

[Close]

BLAST of Cucsa.088330 vs. NCBI nr
Match: gi|590603288|ref|XP_007019968.1| (Mitochondrial transcription termination factor family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 291.2 bits (744), Expect = 1.5e-75
Identity = 139/216 (64.35%), Postives = 174/216 (80.56%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNSYPR 60
           M GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P+
Sbjct: 81  MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 140

Query: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW I S++Q+++  LS+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 141 KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 200

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI+
Sbjct: 201 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 260

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 261 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 294

The following BLAST results are available for this feature:

BLAST of Cucsa.088330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQN8_CUCSA	1.5e-122	99.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402090 PE=4 SV=1	[more]
A0A061FIR9_THECC	1.0e-75	64.35	Mitochondrial transcription termination factor family protein isoform 2 OS=Theob...	[more]
A0A061FJZ4_THECC	1.0e-75	64.35	Mitochondrial transcription termination factor family protein isoform 1 OS=Theob...	[more]
B9MW76_POPTR	3.7e-73	62.50	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11780g PE=4 SV=1	[more]
M5VHT9_PRUPE	3.1e-72	62.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026991mg PE=4 SV=1	[more]

BLAST of Cucsa.088330 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09620.1	2.1e-67	57.27	Mitochondrial transcription termination factor family protein	[more]

BLAST of Cucsa.088330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441758\|ref\|XP_004138649.1\|	2.1e-122	99.54	PREDICTED: uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus]	[more]
gi\|778672961\|ref\|XP_011649898.1\|	2.1e-122	99.54	PREDICTED: uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus]	[more]
gi\|659081221\|ref\|XP_008441217.1\|	3.8e-119	97.22	PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo]	[more]
gi\|590603292\|ref\|XP_007019969.1\|	1.5e-75	64.35	Mitochondrial transcription termination factor family protein isoform 2 [Theobro...	[more]
gi\|590603288\|ref\|XP_007019968.1\|	1.5e-75	64.35	Mitochondrial transcription termination factor family protein isoform 1 [Theobro...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003690	MTERF
IPR003690	MTERF
IPR003690	MTERF

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006355	regulation of transcription, DNA-templated
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding
GO:0003690	double-stranded DNA binding
GO:0003690	double-stranded DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.088330.3	Cucsa.088330.3	mRNA
Cucsa.088330.2	Cucsa.088330.2	mRNA
Cucsa.088330.1	Cucsa.088330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 134..197 score: 1.
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 148..180 score: 0.
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 66..215 score: 1.1
None	No IPR available	PANTHER	PTHR13068:SF26	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 66..215 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.088330	Cla011910	Watermelon (97103) v1	cgywmB101
Cucsa.088330	ClCG11G008190	Watermelon (Charleston Gray)	cgywcgB097
Cucsa.088330	CSPI02G24950	Wild cucumber (PI 183967)	cgycpiB093
Cucsa.088330	Lsi03G004620	Bottle gourd (USVL1VR-Ls)	cgylsiB098
Cucsa.088330	MELO3C008119.2	Melon (DHL92) v3.6.1	cgymedB099
Cucsa.088330	CsaV3_2G033470	Cucumber (Chinese Long) v3	cgycucB092
Cucsa.088330	Bhi04G002055	Wax gourd	cgywgoB111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.088330	Silver-seed gourd	carcgyB0016
Cucsa.088330	Silver-seed gourd	carcgyB1196
Cucsa.088330	Watermelon (97103) v2	cgywmbB097
Cucsa.088330	Cucurbita maxima (Rimu)	cgycmaB0168
Cucsa.088330	Cucurbita maxima (Rimu)	cgycmaB0171
Cucsa.088330	Cucurbita moschata (Rifu)	cgycmoB0163
Cucsa.088330	Cucurbita moschata (Rifu)	cgycmoB0166
Cucsa.088330	Cucumber (Chinese Long) v2	cgycuB090
Cucsa.088330	Melon (DHL92) v3.5.1	cgymeB100
Cucsa.088330	Cucurbita pepo (Zucchini)	cgycpeB0162
Cucsa.088330	Cucurbita pepo (Zucchini)	cgycpeB0164