Lsi03G004620 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G004620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Mitochondrial transcription termination factor family protein
Location	chr03 : 5228851 .. 5236332 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCATATCAAATGCCCTGTAAGAGGCTTCTGAGAATCTCAACCACTTTTGCTTCACTTTCTATGTACTTATGTGTTCTTCCATGAATTCTTTTCAATGCCCTATTGTGAACACCGTCACCAATCTTACCGGTGGAACTGAATTTGAAGAGATCCTAGTCAGCTACCTGTCTACATAGGGCTGCGGCCGCCTATTAATTTATGACATCGTTGTTAATTTTGAAGTCAGACTTCACACTCTTGAATGATTTCACTATAGCCTTCAGTTAGCATATTTTTGTGGGAGCACCTACTGTTATATCTATCTGGAGGCATACTTGTAAAGCTTTAAATTTTTGTTGGGTCCTTTTTATATGCTCAGTACTTGTCTGATTGTCTTTCCAATTTCCCGTGACTTTCTTGATCAAAGTCCTTTTCTTCTCTTGGACTCAGAACTTGGATAAAGTTGATCATCTTAATAGACTGAAACATGATTTTGCGTGGAAATTCGTCTACTAGCTCGTTGATCAACTTTTGTTGGTAGTACAACTATTTCGATAATACTGATACTAAAATTGGAAGGTAATTATAAGATGTAAACTCTATCTTTGATAGAATAAATCTCTTCGTTACATTGACTCGCTTGGATCTTCTCCTTGTTTGAGTGGAACTCATTGTTGGTTCAAATAAAATGCTTTAACAAAATTTAGGAATTGGAGGAATTTTCTATGTGAGATGAGCCCACGTTTTATGAATGGTAAATGTGGTGTCATGATAATCACATTTTTTATAATTGGTACAGCTGGTTCTTACCAAACTTCTTAATATGGTACAGGGATGCTAGGAAAATCGTTCGTGTCTCCCATATCAACCGTTGATTCTGCTACTCTTCTCTGCTGTTCTACTGTGAGTAGCAAATTTTGCCTCTTATCATGGAATACTATGGGAATAACACATCATAGAGAAAATGTTAGGTTTAAATAAAGTCCCACATTGGTTAGAGAAGGGAAGGACAATTATCTTTATTGGTATGAAGTCTTTTAGGTGATTTCAACAATCATGTCATTGAGGAAATATGTGAAGGTTCTGTAGTGTTACATTATTTACTTCGTACTCCCATTGCTTCGCTTTGCACAAATTATAATTTTAAAAATTCTCTTTTAGGATTTCACAACTTATTCTTAATTCTCAATGCAGCGCTGCATTGCCACAGTCATATCAGATGCTGTATGTTCAAATGTGAGTTTCTCCTATCATCCTGCGAAGCATATGATAAAGGATGTGAGAAGACAAAATCCCTATCCCAGGAAGTGGGAAATCCGTTCAACTACTCAAGTTGAAAGTTTAATATTAAGTAATGAGGATAAGAAGACATGGGAAGCTTGTCGGAAAGCTCTGTCTGTGTTCAGCTTCAGCGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTTGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGGAAGTTCCTAATATTGAAATTGTAAATGACATACTGGAATATCTGAGGACACTTGGCCTTTCTAATGACGATCTCTCTAAACTGCTAAAAAAATTCCCAGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAGTCAATGTACAGTTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTACAATGTTGATTGTAAAGGAGACTGCATCGCAAAATGCACCAGATGCTGGGTTCGATTCTAGGTACATTTTTCGTTTTCAGAATTTCTTATGTCAATCATAATTCATATACATGAAGCTACCTATTTAATATCTTCCCAAATCATGTTTGAATTACCGGTTTTCAGTTATTTGGATCATTGTTTTCATTTTCATAAATGTGTACCCTGTTCCCTTTCTGTCTCTCTCATTTGTATATTCTCTTAACATAAAATCATCGAAGTTTTGTCAAAATGCCTTGAACTGTTAAGAGTATATTTGGAAATGGAAAGCGACTATCTTTGTTTCATTGACTTTTGCTTTCATTGTCTTATGAAAAATAACTTCAAACGTTTCCTAAGGAGTTAGTTTGGGGAAAGCAATTGTCCATTCTTGTAAACTAAAAAACAAACAAGTTTTTAAACTGTAGTAGCTTATAAAGGTGTGTTTAGCCCAAGGAGTTGGGAAGTAGGAGTTATGAACTCCACTCCTTGTTTGGGTCACGGAGTTTGTGGGTCCCATCACTAAAAAACATCAATTTTATACTTTATCAACTCTTTACACTGTGGGTCTCAGGAGTTCACAACTCCTTACTCCTCACTATTCCAATTCTTGTCTCAAACACCCTCTAAGATATTTTTACTTTTTTTTTTTTTTTAAGAAACAATTTAATTGATGTATGAAATATATCCAATGGGGGTACAAAAGGGCCCTATTCAAAGGACTGTTCCAATTTGCAACAAAAAAATTTAAATTGTAATCTTTTAGAGGTTGTAAATTTTTACACCAAAAGACAACATTGTAAATAGCCAACTCTAAGACTTCTTTGGGGGATCATTCACAATTGTTGAAGATTCTGGCATTCCTCTCATCCCAAAACTTGGACAATATCGCACAAACGATTCAAGACCATATAATTGCCTTTGTTGCTTGAAAGGGTGATCCAATAGGGTCATTCTAAGCCAGCCAATAGAATCCCCTAAGGAATCCGTTGCCAATTAAAAGAGTGAAACAGTTCAGCCCGTATATTACTGGCAAAAGGACAGTGGAAAAAAAAGTTGAAATTGTGTTTTGTTACTTTCCTTGCAGAGGCAGCACCATGGTGGGGTAAGAATAATCCATGGGCATCCTCTTTGAAGTCTATCCATAGAATTAAGACAAGAATGACTAACTTCCCACGATAAGAATTTGTTCCTTTTAGGGCAAGGGAGCTTCCATAACTTATTGTATAAGTCCTTTTGGAAAGAAGGTCCACCAGATGGGACTTGGTGGAGAAAAGACCACTGCTTTCAAGTTGCCAAAACCAAAAATCCGGTTGGGCAATAAGTTGGATGTTAGGGACAGAGTGTGTAAAACTGGCCCATTCGGTGATCTCATCATCTTTAAAGAATCTTCTGAAGTTTAAGGCCCAAGATCCTGTCGATTGGTTCCAAACCTCTTCAGTTGTGGCAGCTTTGGACCCAGCAATGGCAAAGAGATGAGGGAAGCATTGTTTGAGGGGGGGCAGAACCAATCCATACATCAGACCAAAATGCCGTGGAGGAGCCATTACCAACTCTACAAAGAGTGTTGTTTTGTTTCATAATATGCTGCCAAGGACTTTTAGATGAAACGTTGCCGTTGTTGGATGGTTTTTTTTTTTTTTAATCAAAATGACAAGACCCAAATTTTTCGCTTGATAAAATTTGTCCAAAGAACCTCTTTTTCTTGATTAAAACGCCAAATCCATTTAGCCAAAAGAGATATGTTTCGAAGTCTAATGTCGAAAATGTCAAGCCCCCCCGCATCTAAGGATCGCTTGAGAATATCCCATCTGAGGAGATGAGTGGTATTGCTGGTTCTTTTACCACTCCAAAGAAATTTTTTTAACCTTTCATCAATGATGTCTGCCACCTTGGAAGGGATTTGAAAGAGTGACAAGTAATAGATGGCAAATTTGATAGCGTAGCATTCAGTTGAGTCAATTGGCCTCCTTTGGAAAGGAAATTGTGTGCCATAATTGTAGCCTCTTATCAATCTTGTCAAGAATGGGTTGCCAAAAGGATAGAGATGAGGGCTTACCATAAAAAGGTAACACGAGATAAATAGAACGCCAAGATCCCACCTTACAATCATACTTAACAGTAATGTGATCAATCCACAAACTATAACATATTTTTACTGAATTTGTGTTCTTGCAAGTGAAGTTGTTTTACGGAACAACTCAACACACAAGTTATTTTTCTAATTCTTAAGTAACTTCTGATTGATTTTGATATGAGCAATAGCTTAGTGCACAAAGTTTGCGTAGTAGATATATATTCTTTATGCCCTTGGTGACTTTCTTTTTTTTTAATGGAAAAGTAATATTAGAATACTAATATTCCTTATATATATATGTTTAACAAAGAAATCATATGAAATTATTTTGAAAGTACTCGAATAATTCCACGTATATGCACTAAAAACATGTTATCAATCCTGGAAATAGCATCGTTTTCTCTCCCTCTCTCTAAATGAGCTACCTCAATTCAACAAAATTCTTGGTTATCTTTTTGCTTGTATATGCACAATGTATGTTTTTTCTTCAATAAAAGAATATTCTAAATCTTTTTTTTCTTCTTCTTTTTAACAATTATTTGTAATTTTATTCTCTTTTGCTTCATCATCGTGTTGTTCTTTTCTTTCTTTCTTTTGCAGAGGTATAATGGGTCTCAATCTATGGTTGAATATTCCCAAAAGATATAGGTATGTTTTTTAATTAAATTTATTTTATTTGAATATTTTATTAAAGAATATTCAAAAGTATGTGTGAATATTAAAAAGCCTGCGAATGAAAAATGGGAGTATAGATGCAGCTAGGCTTCAAGAGGTCGAATATTTGCAATCAGGAAATTATAGGACCTTATAGAAAATACAACAGTAATTTTTACTCCAATTGTAAGCAACACAAGCCACTTCTATATATAGTACAATAGGAGAAAATACAAAGCGAAATGCAAGAGAAACCCTTGGCTTCGATATATTGATAGGTAAATAATACCAACTCTATATAGATGGCCTGGGAGAAAAACTCTTGCATGATACACTCAACCCACAGCTGATTATCATCACTAACAAGGAATCCTTTTAGAAGAATTCCGTAACATGTATTTTGAGGCTGTCTTAATAGAGAAATTTGAACCACAAACATCTTGGTTGATAACACATCTAAATGTCAATTGAGCTATGCTCACTTTGACATTTTTATACACATTAATAATACTTAAAATGTATGAACATAAATTAAAGCACCTCCAAACATATGAATGAAAATAATAATAAGGGTTGAAAAGTAAAGTAATTGGAAATTAGGGGCACTTGGGCTTATTGCCGTGAGTCTTGAGGCGAGCATAGCAAGGGCAAGCTTGGTGGTTGCCGTAAGTGCCCGGCGGGACGCAGTGGCAACGACTGCAGCAAGTTCCGCAAGCACGCATACATATCTTCTTTCTGAACACTTTACTGCATCTTCTTGAGCATTCACTCTTGCAATCTAATTCAACCCAATCCAATTGTTAATTTTCTTTATATAAAAGGAAAAAAAAATATTTTTATGTTACATGTTTAGTTTTTAAGAATCTATTTGGTAATGGTTTTGTTTTTAATTTTTTGTTTTTGAAATTTATGTTTGCTTTCTTCTAAATTGCATACTATAGTTTTTCAGATTTCTTGAAGAAATGTTTGAAGTTTTAGTTAAATTTTGATTTGGTTTTTGAAAATATTGGTGGAAAGTGGATAAAAACACTAAGAAGTTTATAGGTGGAAATAGAAATATTTTCTATAAGCTTAATTTTCAAAAATCAAAAATAAAAAAATAAGGTACCATTGGATGACAATTTGGTTGTTGGTTTTTGGTTTTTGAAAATTAAGTTTATTAGGTTCAATTTCTTACAATAGTTTTCATCTTTGTTAAGTAAAATAGTTGTATTCTTAGTCAAATTTTAAAAACGAAAACAAATTTTTAAAAACCATTTTTTTTAGTTTTAAAATTTTGGTTTGGTTTTTATAAACATCGGTAGAAGTGTTTTCATAAGTTTAATTTTTAAAAACTAAAATTTAAAAATGATTACCAAACGGGACCTATAATTACTAAAACATGTCTAAACTTTCTATTTTGTATCTAATAATTGAATTTTAAAAAGTATCTACCAAGTTCTTATACTTTTGATTCTGTATCAATAAGTTTTAAACCTTTTATTTTGTGTTTAATAGAATTTTTACAAATTTTTTAAACATAAAAAATTAAAAGTTTATTGTTCTATTAGACATAAATTTCACTTTTATATCTAATATATTTGTAAATTTAAAAATACTCAAAAAATAAAAATTGTAAACTTAAAAAAGAAAATGTTGAGAACTTGTAATATATATATATATATATATATATATATATATATTATTTGATTATATGGCAACTTACTGATTTTTGGATGATAGTGATACTTTTTGCTGAGAGCTACTGTGTTGGTCCCTTCATCCACCTGAATCCAATGTAATGTCAATATTCATATGATTGTTATAATTATTTACACTCACCTAACTTTTTTGTTTTTCTAATAATTTAGCACATCTTTGATTCGTGATGAGTTTAGTTTAATTAGTTAAGCCTGAAAACTAGGCTTAGAAATCACATATTCTTCTTTAACTCTTCATTTATTCAAACTACGTTCGTTAAACACATGCTCAACATTTTTTCTTATATAAAGCCGAAATATGTATCTTGAACTTCGATATATACTCATACTATGTTAAGTTTCCTACTAGACCAAAATAATTTCAGCGATTAAGGAATTGTTTAGAGCGCTGAGTTGGTTATTATAGTTAATGTTATTATAGTATGCCAATTATAATCGTCTTTGTTTGGGATTTTTAGTTTAGGTCATAATAGTTTGTGTTTGGGGTGCTATAGTCAGACTTACAAATGCAAAGAGAAGATGGTCACAAAATAGTAAACACATTAGATAATGAGAGTTTTCAAATAGTTTTATTATAACAAATTGAGTTATAATAGTTGGGAACTTCGATTATTGTAATAAGAGGTCCAAACATTGGATAGTTCATTCCACCCGAGACAAGCTGGTAGGCCAAACGCTCCCTAAGAGACTGAATAATAAGTTGGAGTTGTTAACTAGTGGTTATTTCCAACAATATTAGCTATAAGCCTTTGTTATCTCAAATTTTCCATCCAATGAATTGCAAAACTTAGAAAGGTGATGATATAAGAAGGGCTAAAGGAAAGCAAGAGGGAGATGGAGAACACTCACAGTAGTGGAAGCCTCTGAAAAACCCTACAACAAAATGCATAAATAAAATTCATTAAATGAAAAAAATTTAAACTGATTACTAGAAAAAAAAAATGTAAAATCATATACATATATATAAATAAATATTACCTGCAGGAGAATGGAAAGAATAATGAAAATGCAAAGAAGACTGAGTGGCTTCATTTCTCTAAAAAATATGCCTAAAAAATTTGATTGATGAACTCAGGTGTGAAGATGCAGGGATATATATAGGTGCAATGGCTCTCCAATTTATATAGATTTTTTTTTTAATTTTCCTTTTATTTTCAACTTAAGACAAAAATGAGGAAAATTACATATTTGTCCTTAAATTTTCATTTTCACATCTATTATTTGGTTTTTGTGTTACCCTTCTGTAAGATCGTAATTTGATATCTTTTTCAATTTTTTTTCCTTATTGTCTTCTTGCTGCCATTAACTGTTAAAAGAAAAAAAGTCATCCAAG

mRNA sequence

ATGACTGCATATCAAATGCCCTGGATGCTAGGAAAATCGTTCGTGTCTCCCATATCAACCGTTGATTCTGCTACTCTTCTCTGCTGTTCTACTCGCTGCATTGCCACAGTCATATCAGATGCTGTATGTTCAAATGTGAGTTTCTCCTATCATCCTGCGAAGCATATGATAAAGGATGTGAGAAGACAAAATCCCTATCCCAGGAAGTGGGAAATCCGTTCAACTACTCAAGTTGAAAGTTTAATATTAAGTAATGAGGATAAGAAGACATGGGAAGCTTGTCGGAAAGCTCTGTCTGTGTTCAGCTTCAGCGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTTGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGGAAGTTCCTAATATTGAAATTGTAAATGACATACTGGAATATCTGAGGACACTTGGCCTTTCTAATGACGATCTCTCTAAACTGCTAAAAAAATTCCCAGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAGTCAATGTACAGTTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTACAATGTTGATTGTAAAGGAGACTGCATCGCAAAATGCACCAGATGCTGGGTTCGATTCTAGAGGTATAATGGGTCTCAATCTATGGTTGAATATTCCCAAAAGATATAGGTGTGAAGATGCAGGGATATATATAGGTGCAATGGCTCTCCAATTTATATAGATTTTTTTTTTAATTTTCCTTTTATTTTCAACTTAAGACAAAAATGAGGAAAATTACATATTTGTCCTTAAATTTTCATTTTCACATCTATTATTTGGTTTTTGTGTTACCCTTCTGTAAGATCGTAATTTGATATCTTTTTCAATTTTTTTTCCTTATTGTCTTCTTGCTGCCATTAACTGTTAAAAGAAAAAAAGTCATCCAAG

Coding sequence (CDS)

ATGACTGCATATCAAATGCCCTGGATGCTAGGAAAATCGTTCGTGTCTCCCATATCAACCGTTGATTCTGCTACTCTTCTCTGCTGTTCTACTCGCTGCATTGCCACAGTCATATCAGATGCTGTATGTTCAAATGTGAGTTTCTCCTATCATCCTGCGAAGCATATGATAAAGGATGTGAGAAGACAAAATCCCTATCCCAGGAAGTGGGAAATCCGTTCAACTACTCAAGTTGAAAGTTTAATATTAAGTAATGAGGATAAGAAGACATGGGAAGCTTGTCGGAAAGCTCTGTCTGTGTTCAGCTTCAGCGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTTGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGGAAGTTCCTAATATTGAAATTGTAAATGACATACTGGAATATCTGAGGACACTTGGCCTTTCTAATGACGATCTCTCTAAACTGCTAAAAAAATTCCCAGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAGTCAATGTACAGTTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTACAATGTTGATTGTAAAGGAGACTGCATCGCAAAATGCACCAGATGCTGGGTTCGATTCTAG

Protein sequence

MTAYQMPWMLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNPYPRKWEIRSTTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDRKKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWGIQGKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF

Homology

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BLAST of Lsi03G004620 vs. TrEMBL
Match: A0A0A0LQN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402090 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 5.1e-110
Identity = 196/216 (90.74%), Postives = 203/216 (93.98%), Query Frame = 1


Query: 9   MLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNPYPR 68
           MLGKS  SPIST+DSAT  CCSTRC AT ISDAVCS+VSFS H AKH IK VRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 69  KWEIRSTTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 128
           KWEI S+TQVESLILS+EDKKTWEACR+ALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 129 KKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWGIQ 188
           +K+VPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELK NVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 189 GKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 225
           GKSLRNLLLRNPKVLGY VDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

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BLAST of Lsi03G004620 vs. TrEMBL
Match: A0A061FIR9_THECC (Mitochondrial transcription termination factor family protein isoform 2 OS=Theobroma cacao GN=TCM_036345 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 6.3e-76
Identity = 139/216 (64.35%), Postives = 172/216 (79.63%), Query Frame = 1


Query: 9   MLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNPYPR 68
           M GKS  S + T DSAT  C  T  +AT   + +  +V+FS    +  IK        P+
Sbjct: 1   MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 60

Query: 69  KWEIRSTTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 128
           KW I ST+Q+++  LSNED+KTWEACR+ALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 61  KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 120

Query: 129 KKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWGIQ 188
           KKEVP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+ NVQ+L+K+WGI+
Sbjct: 121 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 180

Query: 189 GKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 225
           GKSL+NLLLRNPKVLGYNVDCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 214

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BLAST of Lsi03G004620 vs. TrEMBL
Match: A0A061FJZ4_THECC (Mitochondrial transcription termination factor family protein isoform 1 OS=Theobroma cacao GN=TCM_036345 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 6.3e-76
Identity = 139/216 (64.35%), Postives = 172/216 (79.63%), Query Frame = 1


Query: 9   MLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNPYPR 68
           M GKS  S + T DSAT  C  T  +AT   + +  +V+FS    +  IK        P+
Sbjct: 81  MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 140

Query: 69  KWEIRSTTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 128
           KW I ST+Q+++  LSNED+KTWEACR+ALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 141 KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 200

Query: 129 KKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWGIQ 188
           KKEVP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+ NVQ+L+K+WGI+
Sbjct: 201 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 260

Query: 189 GKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 225
           GKSL+NLLLRNPKVLGYNVDCKGDC+A+CTRCWVRF
Sbjct: 261 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 294

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BLAST of Lsi03G004620 vs. TrEMBL
Match: A0A067LFC2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03900 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.7e-74
Identity = 137/216 (63.43%), Postives = 174/216 (80.56%), Query Frame = 1


Query: 9   MLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNPYPR 68
           MLG+   SP+ T DS T L   T  +A  ++    SNV +S   +  +I      +  P+
Sbjct: 1   MLGRPLTSPLLTFDSKTCLSFLTPNLAPSVAH---SNVKYSGAFSSSVITYTSHFS--PK 60

Query: 69  KWEIRSTTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 128
           KW +RST Q+++L LS+E+KKTWEACR+ALS F FSVEE+DKMLGKAFGH+HSPYWGE+R
Sbjct: 61  KWILRSTAQIDNLTLSDEEKKTWEACREALSAFEFSVEEKDKMLGKAFGHVHSPYWGEER 120

Query: 129 KKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWGIQ 188
           KKEVP  EIV++IL+YLR+LGLS+DDL KL+KKFPEVLGC+LE EL+ NV++L+K+WGI+
Sbjct: 121 KKEVPKFEIVSEILDYLRSLGLSDDDLYKLVKKFPEVLGCSLEHELRNNVKILEKDWGIK 180

Query: 189 GKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 225
           GKSLRNL+LRNPKVLGYN+DCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLRNLMLRNPKVLGYNIDCKGDCMAQCTRCWVRF 211

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BLAST of Lsi03G004620 vs. TrEMBL
Match: B9MW76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11780g PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.2e-73
Identity = 135/216 (62.50%), Postives = 166/216 (76.85%), Query Frame = 1


Query: 9   MLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNPYPR 68
           MLG+S  SP+ T DSA    C T  + T   +A C NV+    P+ ++ +     +  PR
Sbjct: 1   MLGRSLASPLLTFDSAARSSCVTPDLVTAAPNAACLNVNSLALPS-NVTRGYCTSHFSPR 60

Query: 69  KWEIRSTTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 128
           KW I+ST Q ++   SNED+KTWEACR+ALS F+F+ EE+DK+LGKAFGH+HSPYWGE R
Sbjct: 61  KWAIQSTAQADNTTFSNEDRKTWEACREALSAFNFNAEEKDKILGKAFGHVHSPYWGEQR 120

Query: 129 KKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWGIQ 188
           K EVP  EIV + L+YLR+LGLS DDL KLLKKFPEVLGC+LEQELK NV++L+K+WGI+
Sbjct: 121 KLEVPKFEIVCETLDYLRSLGLSEDDLFKLLKKFPEVLGCSLEQELKTNVKILEKDWGIK 180

Query: 189 GKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 225
           GKSL+ LLLRNPK LGYNVDCKGDCIA+CTRCW RF
Sbjct: 181 GKSLQKLLLRNPKALGYNVDCKGDCIAQCTRCWARF 215

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BLAST of Lsi03G004620 vs. TAIR10
Match: AT4G09620.1 (AT4G09620.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 245.7 bits (626), Expect = 2.6e-65
Identity = 125/218 (57.34%), Postives = 161/218 (73.85%), Query Frame = 1


Query: 9   MLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNPYPR 68
           M+G S  SP++T+ SA     S   + T  ++ +   ++ SYH     +    R + Y R
Sbjct: 3   MVGNSLASPLATLGSAKCFRHSAVDLVTY-TNVLPLRLNSSYHGVNGGV----RTSSYSR 62

Query: 69  -KWEIR-STTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWGE 128
            KW +  STTQVE+   SNED   WE C++ALS F FSVEE+DK+LGKAFGHIHSPYW E
Sbjct: 63  SKWIVFCSTTQVET---SNEDPNIWEECKEALSCFDFSVEEKDKILGKAFGHIHSPYWTE 122

Query: 129 DRKKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWG 188
           +R KE P +E +N ILE+LR+LGLS++DL K++KKFPEVLGC+LE+E+K N+ +L+ +WG
Sbjct: 123 ERVKENPKVETLNQILEFLRSLGLSDEDLHKVMKKFPEVLGCSLEEEMKPNIGILENQWG 182

Query: 189 IQGKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 225
           I GK LRNLLLRNPKVLGYNVDCKGDC+A+CTRCWVRF
Sbjct: 183 ITGKQLRNLLLRNPKVLGYNVDCKGDCVAQCTRCWVRF 212

[Close]

BLAST of Lsi03G004620 vs. TAIR10
Match: AT4G02990.1 (AT4G02990.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.1e-06
Identity = 23/76 (30.26%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 137 IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWGIQGKSLRNLL 196
           I+  ++EYL  LG+     ++L++K P +LG  L+  +K NVQ+L +++ ++  SL +++
Sbjct: 286 IIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQIL-QDFNVRETSLPSII 345

Query: 197 LRNPKVLGYNVDCKGD 213
            + P+++G ++  K D
Sbjct: 346 AQYPEIIGIDLKPKLD 360

[Close]

BLAST of Lsi03G004620 vs. NCBI nr
Match: gi|659081221|ref|XP_008441217.1| (PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo])

HSP 1 Score: 414.8 bits (1065), Expect = 9.3e-113
Identity = 199/216 (92.13%), Postives = 205/216 (94.91%), Query Frame = 1


Query: 9   MLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNPYPR 68
           MLGKS  SPIST+DSAT  CCSTRC AT ISDAVCSNVSFSYHPAKH IK VRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 69  KWEIRSTTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 128
           KWE+ S+TQVESLILS+EDKKTWEACR+ALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 129 KKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWGIQ 188
           KK+VPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELK NVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 189 GKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 225
           GKSLRNLLLRNPKVLGY VDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of Lsi03G004620 vs. NCBI nr
Match: gi|449441758|ref|XP_004138649.1| (PREDICTED: uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 7.4e-110
Identity = 196/216 (90.74%), Postives = 203/216 (93.98%), Query Frame = 1


Query: 9   MLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNPYPR 68
           MLGKS  SPIST+DSAT  CCSTRC AT ISDAVCS+VSFS H AKH IK VRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 69  KWEIRSTTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 128
           KWEI S+TQVESLILS+EDKKTWEACR+ALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 129 KKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWGIQ 188
           +K+VPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELK NVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 189 GKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 225
           GKSLRNLLLRNPKVLGY VDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of Lsi03G004620 vs. NCBI nr
Match: gi|778672961|ref|XP_011649898.1| (PREDICTED: uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 7.4e-110
Identity = 197/219 (89.95%), Postives = 204/219 (93.15%), Query Frame = 1


Query: 6   MPWMLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNP 65
           M  MLGKS  SPIST+DSAT  CCSTRC AT ISDAVCS+VSFS H AKH IK VRRQNP
Sbjct: 1   MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNP 60

Query: 66  YPRKWEIRSTTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWG 125
           YPRKWEI S+TQVESLILS+EDKKTWEACR+ALSVFSFSVEEQDKMLGKAFGHIHSPYWG
Sbjct: 61  YPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWG 120

Query: 126 EDRKKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEW 185
           EDR+K+VPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELK NVQLLDKEW
Sbjct: 121 EDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEW 180

Query: 186 GIQGKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 225
           GIQGKSLRNLLLRNPKVLGY VDCKGDCIAKCTRCWVRF
Sbjct: 181 GIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 219

[Close]

BLAST of Lsi03G004620 vs. NCBI nr
Match: gi|590603292|ref|XP_007019969.1| (Mitochondrial transcription termination factor family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 292.0 bits (746), Expect = 9.1e-76
Identity = 139/216 (64.35%), Postives = 172/216 (79.63%), Query Frame = 1


Query: 9   MLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNPYPR 68
           M GKS  S + T DSAT  C  T  +AT   + +  +V+FS    +  IK        P+
Sbjct: 1   MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 60

Query: 69  KWEIRSTTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 128
           KW I ST+Q+++  LSNED+KTWEACR+ALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 61  KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 120

Query: 129 KKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWGIQ 188
           KKEVP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+ NVQ+L+K+WGI+
Sbjct: 121 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 180

Query: 189 GKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 225
           GKSL+NLLLRNPKVLGYNVDCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 214

[Close]

BLAST of Lsi03G004620 vs. NCBI nr
Match: gi|590603288|ref|XP_007019968.1| (Mitochondrial transcription termination factor family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 292.0 bits (746), Expect = 9.1e-76
Identity = 139/216 (64.35%), Postives = 172/216 (79.63%), Query Frame = 1


Query: 9   MLGKSFVSPISTVDSATLLCCSTRCIATVISDAVCSNVSFSYHPAKHMIKDVRRQNPYPR 68
           M GKS  S + T DSAT  C  T  +AT   + +  +V+FS    +  IK        P+
Sbjct: 81  MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 140

Query: 69  KWEIRSTTQVESLILSNEDKKTWEACRKALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 128
           KW I ST+Q+++  LSNED+KTWEACR+ALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 141 KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 200

Query: 129 KKEVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKVNVQLLDKEWGIQ 188
           KKEVP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+ NVQ+L+K+WGI+
Sbjct: 201 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 260

Query: 189 GKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 225
           GKSL+NLLLRNPKVLGYNVDCKGDC+A+CTRCWVRF
Sbjct: 261 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 294

The following BLAST results are available for this feature:

BLAST of Lsi03G004620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G004620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQN8_CUCSA	5.1e-110	90.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402090 PE=4 SV=1	[more]
A0A061FIR9_THECC	6.3e-76	64.35	Mitochondrial transcription termination factor family protein isoform 2 OS=Theob...	[more]
A0A061FJZ4_THECC	6.3e-76	64.35	Mitochondrial transcription termination factor family protein isoform 1 OS=Theob...	[more]
A0A067LFC2_JATCU	7.7e-74	63.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03900 PE=4 SV=1	[more]
B9MW76_POPTR	2.2e-73	62.50	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11780g PE=4 SV=1	[more]

BLAST of Lsi03G004620 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09620.1	2.6e-65	57.34	Mitochondrial transcription termination factor family protein	[more]
AT4G02990.1	2.1e-06	30.26	Mitochondrial transcription termination factor family protein	[more]

BLAST of Lsi03G004620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081221\|ref\|XP_008441217.1\|	9.3e-113	92.13	PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo]	[more]
gi\|449441758\|ref\|XP_004138649.1\|	7.4e-110	90.74	PREDICTED: uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus]	[more]
gi\|778672961\|ref\|XP_011649898.1\|	7.4e-110	89.95	PREDICTED: uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus]	[more]
gi\|590603292\|ref\|XP_007019969.1\|	9.1e-76	64.35	Mitochondrial transcription termination factor family protein isoform 2 [Theobro...	[more]
gi\|590603288\|ref\|XP_007019968.1\|	9.1e-76	64.35	Mitochondrial transcription termination factor family protein isoform 1 [Theobro...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003690	MTERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0042646	plastid nucleoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004620.1	Lsi03G004620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 142..207 score: 8.1
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 56..223 score: 3.5
None	No IPR available	PANTHER	PTHR13068:SF26	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 56..223 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G004620	Csa2G402090	Cucumber (Chinese Long) v2	culsiB115
Lsi03G004620	CSPI02G24950	Wild cucumber (PI 183967)	cpilsiB113
Lsi03G004620	Cucsa.088330	Cucumber (Gy14) v1	cgylsiB098
Lsi03G004620	CmoCh15G000300	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G004620	Cla011910	Watermelon (97103) v1	lsiwmB275
Lsi03G004620	MELO3C008119	Melon (DHL92) v3.5.1	lsimeB259
Lsi03G004620	MELO3C008119.2	Melon (DHL92) v3.6.1	lsimedB272
Lsi03G004620	Cla97C11G215380	Watermelon (97103) v2	lsiwmbB224
Lsi03G004620	Bhi04G002055	Wax gourd	lsiwgoB322
Lsi03G004620	Cp4.1LG13g11600	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G004620	CsGy2G024680	Cucumber (Gy14) v2	cgyblsiB102
Lsi03G004620	CsaV3_2G033470	Cucumber (Chinese Long) v3	cuclsiB127

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G004620	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G004620	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G004620	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G004620	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G004620	Watermelon (Charleston Gray)	lsiwcgB227
Lsi03G004620	Silver-seed gourd	carlsiB017
Lsi03G004620	Silver-seed gourd	carlsiB986