CSPI02G24950.3 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G24950.3
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Mitochondrial transcription termination factor family protein
Location	Chr2 : 21354572 .. 21357768 (+)
Sequence length	651

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGGTTATGTTATGTGGTTGTGGCTTTAGGCTACAAGCAAAGGACACGAAGATTGGTCTCTTAGTGTGAACATACTCTGTGGTTCGCCCTTCTTCTTCTTCAATCTCCGCCCCACAATCTCAACTCTAAATAAGCTGTTCACTTCCAATCCCTCTAATTTCAGGTACAATTCCTCCAATTTCATCTCCATAATCTGTCTGCATTTCTTTCATTAATTTTACTTCTGCTGGAATCCTTGTTTCGTTTTGTATAACGTACCACCTTTTATTAATTGGACTTACTTAACTGTTTCTTTTTCGCATTCGGTTTTGATCGGAATTCAGTTCAATTAAGAGAATATTCATATATATGCCCCCTTGAGCTTCTGATCCTATTCTGAACAACCAGTTCAACTCTGTACCTGTATACTGCCGATACTACCTTATTGAAGATGATATCATATGATTCACTTCTGATCGTTGAGAAAGACATTGGTTGAAATTTTTGCTGAATGATATAATAAAAAACGTAGTGGCTGCATTGTTTGGAAGATCATGTCAGGTTGTGCAGTAACTTCTTTTTAACATGCTGGAGTATTCGCTATTCGTTAAACGACATCTTGACCATGGGATAATCCCTAGATCGGTAATAATAATAATCAAGCATGTGATTTTAAAATAATCAAGCATGTAATTTTAAAATGAAAATTCAAATTAAGGTGGAGAGTAAAATACCACGGATTGAAGTCGAAATTTCCATAATGGGCTACAATGAGTTTTTTCCTAGTCTCATGAGTAATTCTGGTTCTTTGTGTGAATGACCCATGAATGTGATTGAACTCAATTACCAAATTCAATGACTGCATATCAAATCTTCTTTAAGAGGATCTCAGATTCTCAACCACTTTTGGTTCACTCTTCATGTACTTATGTTTTTTTTGTTTCCATGAATCTTTTGAAAGCTCTATTTTGAGCATGGTAACCAATCTTACCTGTGGGAACTGAATTTGAAGAGATCCTAGTTAGCCACCTGTCTGCATAGGGTTGCCTATTATTTTGTGACAGCATGTTATTTCGGAATTCAAAACTTCGCACTCTTGAATGATTTCACTATAGCCTTCAGTTAAAAATATTTTTGTGGGAGCATCTATTGTTATATCTATCTGGAGGCATACTTGTGAAACTTTAAGTTCTTGTTGAGGCCTTTCTATCTACTCAGTTCTTGTTGGATTGTCCTTTATTCCAATTTCCGGTGACTTTCTTGATCAAAGTCCTCTTCTTCTCTTGAACTCAGAACTTGGATAAAGCTGACCATCTCAATAGACTAAGACATAATTTTGGGAGGAATTTTGTCTACTACCTCGTTGATCAACTGTAATTGGTAGTAAGGCTATTTAAAAAATATTTTTGTTAGACGTAATTATAAAGAAAATTGCATCAAATGACAAAAACATTTAGAAAAAAACAGATCATGACACTTATTTTTTGCATATTGTGAATATGGCAAAATTAGTGATAGCGGCCATCAGGTGGTAATCATAGGGTTATCGGCTTTTAAATTTGTTACTTTTGCAATTTAAAAATGTAGTGACATAAGTCTTATTATCATAATTTATTTTGTTATTTTTGCAAGGGCCCCTAATTATAACTTGAAAACTCTGTCTTTGATAGAACACATCTTTGCATTAACTTGCTTGGATCCTCTCCATATTTGAGTGAAACTCATTATTGGTTCAAATAAAATGTTTTAATAAAATCTAGAAATTCTTTGATGCTCAAATGTTGTAAAATCAGGTGGGATGTCCCGTGACATAAGTCAAGGTTCATGTAAGCTGACCTAGACACTCACATGTATCAAAAAAGAATTGGAAGAAACTTTTGTGTGAGATGGTACATGCTTTATGAATGGTAAACGTGTTATGATAATCACATTTTTTATAGTTGGTACAGCTGGCTCTAACCAAACTTCTTAATATGCTACAGGGATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTGTGAGTAGCAAATTTTGCCTCTTATAGTTAAATGCTATGGGAATACACATCATAATAGAGAAAATATTAGGTGCTAATGGGACTAATCCCATGTTGGGAAGAGAAAGAACCATAATATACTAGTAAGGACGGATATCTTTATTAATACGAGGTCTTTTAGGTGATTTCAATAATCATACCATTGAGGAGATATGTGAAGGTTTAGTAGGTTTTTTTTTTTTTTTTGCAGGAATGCAATGGGAAATGAGCAAATAATTGTTACATCATTTACTTCATACTTATATTGTTTGCATTGCTCAAATAATGTTTTTATAATTTCTCTTTTTAGGATTTCATAACTTATTCTTAATTCTCAATGCAGCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTTAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAGGTACATTTTCTTTTCAGAATTTCTTATGTTGACTAATGATATTGAACTGTAGCCACAACACTGTATTCATGCATATTAAATTGTTAGAATTAAGAATATAAACGGTCAAACCTTGTACAACAATTCAATGTTCAGAGAAAGATCTTCTTCAACTAAACACATAAGAGTTCGAAATTGTGAAATGGGAAGCAAGACAATTGAATATGTTTAGCGTAATGGAG

mRNA sequence

ATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTTAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAG

Coding sequence (CDS)

ATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTTAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAG

Homology

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BLAST of CSPI02G24950.3 vs. TrEMBL
Match: A0A0A0LQN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402090 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 6.7e-123
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 61  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEICSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

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BLAST of CSPI02G24950.3 vs. TrEMBL
Match: A0A061FJZ4_THECC (Mitochondrial transcription termination factor family protein isoform 1 OS=Theobroma cacao GN=TCM_036345 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.2e-75
Identity = 138/216 (63.89%), Postives = 173/216 (80.09%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60
           M GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P+
Sbjct: 81  MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 140

Query: 61  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW I S++Q+++   S+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 141 KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 200

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI+
Sbjct: 201 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 260

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 261 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 294

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BLAST of CSPI02G24950.3 vs. TrEMBL
Match: A0A061FIR9_THECC (Mitochondrial transcription termination factor family protein isoform 2 OS=Theobroma cacao GN=TCM_036345 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.2e-75
Identity = 138/216 (63.89%), Postives = 173/216 (80.09%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60
           M GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P+
Sbjct: 1   MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 60

Query: 61  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW I S++Q+++   S+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 61  KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI+
Sbjct: 121 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 214

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BLAST of CSPI02G24950.3 vs. TrEMBL
Match: B9MW76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11780g PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.7e-73
Identity = 136/216 (62.96%), Postives = 168/216 (77.78%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60
           MLG+SLASP+ T DSA R  C T    TA  +A C +V+ S     +  +G    +  PR
Sbjct: 1   MLGRSLASPLLTFDSAARSSCVTPDLVTAAPNAACLNVN-SLALPSNVTRGYCTSHFSPR 60

Query: 61  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW I S+ Q ++  FS+ED+KTWEACR+ALS F+F+ EE+DK+LGKAFGH+HSPYWGE R
Sbjct: 61  KWAIQSTAQADNTTFSNEDRKTWEACREALSAFNFNAEEKDKILGKAFGHVHSPYWGEQR 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           + +VP  EIV + L+YLR+LGLS DDL KLLKKFPEVLGC+LEQELKTNV++L+K+WGI+
Sbjct: 121 KLEVPKFEIVCETLDYLRSLGLSEDDLFKLLKKFPEVLGCSLEQELKTNVKILEKDWGIK 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSL+ LLLRNPK LGY VDCKGDCIA+CTRCW RF
Sbjct: 181 GKSLQKLLLRNPKALGYNVDCKGDCIAQCTRCWARF 215

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BLAST of CSPI02G24950.3 vs. TrEMBL
Match: M5VHT9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026991mg PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.7e-71
Identity = 134/216 (62.04%), Postives = 170/216 (78.70%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60
           MLGKSLASP+ T D ATRFC ST     A  +    +VS + +S  ++       +  P+
Sbjct: 1   MLGKSLASPLLTHDCATRFCFSTPDVINAAPNIRLPNVSQNLNSRAYS------PSFSPK 60

Query: 61  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW + S+ ++E+   +DE++KTWEAC++A+S FS ++EE DK+LGKAFG +HSPYWGE R
Sbjct: 61  KWVLHSTAEIENTALTDEERKTWEACQEAISAFSITIEEGDKILGKAFGLVHSPYWGEIR 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +K+VP IEIV + L+YLR+L LS+DDL KLLKKFPEVLGCNLE ELKTNVQ+L+KEWGI+
Sbjct: 121 KKEVPTIEIVKEKLDYLRSLSLSDDDLCKLLKKFPEVLGCNLENELKTNVQVLEKEWGIK 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSLRNLLLRNP+VLGY VDCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLRNLLLRNPRVLGYNVDCKGDCMAQCTRCWVRF 210

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BLAST of CSPI02G24950.3 vs. TAIR10
Match: AT4G09620.1 (AT4G09620.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 251.1 bits (640), Expect = 6.1e-67
Identity = 125/220 (56.82%), Postives = 164/220 (74.55%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVC--SHVSFSCHSAKHTIKGVRRQNPY 60
           M+G SLASP++T+ SA       +C   +  D V   + +    +S+ H + G  R + Y
Sbjct: 3   MVGNSLASPLATLGSA-------KCFRHSAVDLVTYTNVLPLRLNSSYHGVNGGVRTSSY 62

Query: 61  PR-KWEI-CSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYW 120
            R KW + CS+TQVE+   S+ED   WE C++ALS F FSVEE+DK+LGKAFGHIHSPYW
Sbjct: 63  SRSKWIVFCSTTQVET---SNEDPNIWEECKEALSCFDFSVEEKDKILGKAFGHIHSPYW 122

Query: 121 GEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKE 180
            E+R K+ P +E +N ILE+LR+LGLS++DL K++KKFPEVLGC+LE+E+K N+ +L+ +
Sbjct: 123 TEERVKENPKVETLNQILEFLRSLGLSDEDLHKVMKKFPEVLGCSLEEEMKPNIGILENQ 182

Query: 181 WGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           WGI GK LRNLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 183 WGITGKQLRNLLLRNPKVLGYNVDCKGDCVAQCTRCWVRF 212

[Close]

BLAST of CSPI02G24950.3 vs. TAIR10
Match: AT4G02990.1 (AT4G02990.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 48.5 bits (114), Expect = 6.0e-06
Identity = 21/68 (30.88%), Postives = 45/68 (66.18%), Query Frame = 1


Query: 129 IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLL 188
           I+  ++EYL  LG+     ++L++K P +LG  L+  +K NVQ+L +++ ++  SL +++
Sbjct: 286 IIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQIL-QDFNVRETSLPSII 345

Query: 189 LRNPKVLG 197
            + P+++G
Sbjct: 346 AQYPEIIG 352

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BLAST of CSPI02G24950.3 vs. NCBI nr
Match: gi|449441758|ref|XP_004138649.1| (PREDICTED: uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus])

HSP 1 Score: 448.0 bits (1151), Expect = 9.6e-123
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 61  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEICSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of CSPI02G24950.3 vs. NCBI nr
Match: gi|778672961|ref|XP_011649898.1| (PREDICTED: uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus])

HSP 1 Score: 448.0 bits (1151), Expect = 9.6e-123
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR
Sbjct: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63

Query: 61  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEICSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 64  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 219

[Close]

BLAST of CSPI02G24950.3 vs. NCBI nr
Match: gi|659081221|ref|XP_008441217.1| (PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo])

HSP 1 Score: 437.2 bits (1123), Expect = 1.7e-119
Identity = 210/216 (97.22%), Postives = 213/216 (98.61%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 61  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWE+CSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of CSPI02G24950.3 vs. NCBI nr
Match: gi|590603288|ref|XP_007019968.1| (Mitochondrial transcription termination factor family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 288.9 bits (738), Expect = 7.4e-75
Identity = 138/216 (63.89%), Postives = 173/216 (80.09%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60
           M GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P+
Sbjct: 81  MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 140

Query: 61  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW I S++Q+++   S+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 141 KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 200

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI+
Sbjct: 201 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 260

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 261 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 294

[Close]

BLAST of CSPI02G24950.3 vs. NCBI nr
Match: gi|590603292|ref|XP_007019969.1| (Mitochondrial transcription termination factor family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 288.9 bits (738), Expect = 7.4e-75
Identity = 138/216 (63.89%), Postives = 173/216 (80.09%), Query Frame = 1


Query: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60
           M GKSLAS + T DSAT FC  T   AT+  + +   V+FS    +  IK        P+
Sbjct: 1   MPGKSLASSLLTFDSATCFC--TPDLATSAPNIISFSVTFSSSLPQKAIKRFGSTYFSPK 60

Query: 61  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KW I S++Q+++   S+ED+KTWEACRQALS F+FS EE+DK+LGKAFGH+HSPYWGE+R
Sbjct: 61  KWAIHSTSQIKNSALSNEDRKTWEACRQALSAFNFSTEEEDKILGKAFGHVHSPYWGEER 120

Query: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180
           +K+VP  EI+N+IL+YLRTL LS+DDL KLLKKFPEVLGC++E EL+TNVQ+L+K+WGI+
Sbjct: 121 KKEVPKFEIINEILDYLRTLSLSDDDLYKLLKKFPEVLGCSIEHELRTNVQILEKDWGIK 180

Query: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 217
           GKSL+NLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 181 GKSLKNLLLRNPKVLGYNVDCKGDCMAQCTRCWVRF 214

The following BLAST results are available for this feature:

BLAST of CSPI02G24950.3 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G24950.3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQN8_CUCSA	6.7e-123	99.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402090 PE=4 SV=1	[more]
A0A061FJZ4_THECC	5.2e-75	63.89	Mitochondrial transcription termination factor family protein isoform 1 OS=Theob...	[more]
A0A061FIR9_THECC	5.2e-75	63.89	Mitochondrial transcription termination factor family protein isoform 2 OS=Theob...	[more]
B9MW76_POPTR	1.7e-73	62.96	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11780g PE=4 SV=1	[more]
M5VHT9_PRUPE	2.7e-71	62.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026991mg PE=4 SV=1	[more]

BLAST of CSPI02G24950.3 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09620.1	6.1e-67	56.82	Mitochondrial transcription termination factor family protein	[more]
AT4G02990.1	6.0e-06	30.88	Mitochondrial transcription termination factor family protein	[more]

BLAST of CSPI02G24950.3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441758\|ref\|XP_004138649.1\|	9.6e-123	99.54	PREDICTED: uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus]	[more]
gi\|778672961\|ref\|XP_011649898.1\|	9.6e-123	99.54	PREDICTED: uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus]	[more]
gi\|659081221\|ref\|XP_008441217.1\|	1.7e-119	97.22	PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo]	[more]
gi\|590603288\|ref\|XP_007019968.1\|	7.4e-75	63.89	Mitochondrial transcription termination factor family protein isoform 1 [Theobro...	[more]
gi\|590603292\|ref\|XP_007019969.1\|	7.4e-75	63.89	Mitochondrial transcription termination factor family protein isoform 2 [Theobro...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003690	MTERF

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G24950	CSPI02G24950	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G24950.3	CSPI02G24950.3-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G24950.3.utr5p1	CSPI02G24950.3.utr5p1	five_prime_UTR
CSPI02G24950.3.utr5p2	CSPI02G24950.3.utr5p2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G24950.3.cds2	CSPI02G24950.3.cds2	CDS
CSPI02G24950.3.cds3	CSPI02G24950.3.cds3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G24950.3.utr3p1	CSPI02G24950.3.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 134..197 score: 1.
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 148..180 score: 0.
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 66..215 score: 8.9
None	No IPR available	PANTHER	PTHR13068:SF26	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 66..215 score: 8.9