CSPI02G11680 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G11680
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 12007500 .. 12008045 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATCCATAAATGGATTGAACGAAAAAGCAAAGCCAAAAGAAAGTCTGATATAGTTGTAAAAATGGACAATCAAAGCATCTATTTAATCCATCTTAATTTCTTCCTTCACTTCCCTCCTAATTCATACTTCATTTTTTTCCTTTTCTTTGCCCCCAAAGCACTTCTCCCTTCTCCCATTCACTCCTTTTTCTCCCGTCTCATTTCTAAGCCTCATAGCTAACTTTCAGTTAGGTATAGCAATTGTTCAAGTCACAAACGTCCTTATCCATGTTGTAGCAATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACGGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCCTCTCTTGCGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTAA

mRNA sequence

ATGTTATCCATAAATGGATTGAACGAAAAAGCAAAGCCAAAAGAAAGTATAGCAATTGTTCAAGTCACAAACGTCCTTATCCATGTTGTAGCAATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACGGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCCTCTCTTGCGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTAA

Coding sequence (CDS)

ATGTTATCCATAAATGGATTGAACGAAAAAGCAAAGCCAAAAGAAAGTATAGCAATTGTTCAAGTCACAAACGTCCTTATCCATGTTGTAGCAATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACGGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCCTCTCTTGCGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTAA
Homology
[Close]
BLAST of CSPI02G11680 vs. TrEMBL
Match: A0A0A0LKZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G236110 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-43
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1 

Query: 17  IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL 76
           IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL
Sbjct: 25  IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL 84

Query: 77  AMAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC 119
            MAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC
Sbjct: 85  VMAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC 126

[Close]
BLAST of CSPI02G11680 vs. NCBI nr
Match: gi|700206620|gb|KGN61739.1| (hypothetical protein Csa_2G236110 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-43
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1 

Query: 17  IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL 76
           IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL
Sbjct: 25  IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL 84

Query: 77  AMAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC 119
            MAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC
Sbjct: 85  VMAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC 126

The following BLAST results are available for this feature:
BLAST of CSPI02G11680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G11680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKZ8_CUCSA1.3e-4399.02Uncharacterized protein OS=Cucumis sativus GN=Csa_2G236110 PE=4 SV=1[more]
BLAST of CSPI02G11680 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G11680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206620|gb|KGN61739.1|1.8e-4399.02hypothetical protein Csa_2G236110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G11680.1CSPI02G11680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G11680Csa2G236110Cucumber (Chinese Long) v2cpicuB065
CSPI02G11680CsaV3_2G014180Cucumber (Chinese Long) v3cpicucB080
CSPI02G11680CsGy2G011700Cucumber (Gy14) v2cgybcpiB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G11680Cucumber (Chinese Long) v3cpicucB115
CSPI02G11680Cucumber (Chinese Long) v3cpicucB122
CSPI02G11680Watermelon (97103) v2cpiwmbB169
CSPI02G11680Watermelon (97103) v2cpiwmbB104
CSPI02G11680Watermelon (97103) v2cpiwmbB124
CSPI02G11680Wax gourdcpiwgoB146
CSPI02G11680Wax gourdcpiwgoB177
CSPI02G11680Wax gourdcpiwgoB181
CSPI02G11680Wild cucumber (PI 183967)cpicpiB088
CSPI02G11680Wild cucumber (PI 183967)cpicpiB094
CSPI02G11680Cucumber (Gy14) v1cgycpiB119
CSPI02G11680Cucumber (Gy14) v1cgycpiB332
CSPI02G11680Cucurbita maxima (Rimu)cmacpiB115
CSPI02G11680Cucurbita maxima (Rimu)cmacpiB512
CSPI02G11680Cucurbita maxima (Rimu)cmacpiB547
CSPI02G11680Cucurbita maxima (Rimu)cmacpiB593
CSPI02G11680Cucurbita moschata (Rifu)cmocpiB111
CSPI02G11680Cucurbita moschata (Rifu)cmocpiB500
CSPI02G11680Cucurbita moschata (Rifu)cmocpiB536
CSPI02G11680Cucurbita moschata (Rifu)cmocpiB582
CSPI02G11680Melon (DHL92) v3.5.1cpimeB099
CSPI02G11680Watermelon (Charleston Gray)cpiwcgB097
CSPI02G11680Watermelon (Charleston Gray)cpiwcgB131
CSPI02G11680Watermelon (97103) v1cpiwmB106
CSPI02G11680Watermelon (97103) v1cpiwmB150
CSPI02G11680Cucurbita pepo (Zucchini)cpecpiB236
CSPI02G11680Cucurbita pepo (Zucchini)cpecpiB269
CSPI02G11680Cucurbita pepo (Zucchini)cpecpiB671
CSPI02G11680Cucurbita pepo (Zucchini)cpecpiB706
CSPI02G11680Bottle gourd (USVL1VR-Ls)cpilsiB091
CSPI02G11680Bottle gourd (USVL1VR-Ls)cpilsiB097
CSPI02G11680Bottle gourd (USVL1VR-Ls)cpilsiB106
CSPI02G11680Melon (DHL92) v3.6.1cpimedB091
CSPI02G11680Melon (DHL92) v3.6.1cpimedB151
CSPI02G11680Cucumber (Gy14) v2cgybcpiB260
CSPI02G11680Cucumber (Gy14) v2cgybcpiB309
CSPI02G11680Silver-seed gourdcarcpiB0831
CSPI02G11680Silver-seed gourdcarcpiB0926