Csa2G236110 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G236110
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 11488808 .. 11489288 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATCAAAGCATCTATTTAATCCATCTTAATTTCTTCCTTCACTTCCCTCCTAATTCATACGTCATTTTTTTCCTTTTCTTTGCCCCCAAAGCACTTCTCCCTTCTCCCATTCACTCCTTTTTCTCCCGTCTCATTTCTAAGCCTCATAGCTAACTTTCAGTTAGGTATAGCAATTGTTCAAGTCACAAACGTCCTTATCCATGTTGTAGCAATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACTGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCTTCTCTTGTGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTAA

mRNA sequence

ATGGACAATCAAAGCATCTATTTAATCCATCTTAATTTCTTCCTTCACTTCCCTCCTAATTCATACTTAGGTATAGCAATTGTTCAAGTCACAAACGTCCTTATCCATGTTGTAGCAATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACTGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCTTCTCTTGTGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTAA

Coding sequence (CDS)

ATGGACAATCAAAGCATCTATTTAATCCATCTTAATTTCTTCCTTCACTTCCCTCCTAATTCATACTTAGGTATAGCAATTGTTCAAGTCACAAACGTCCTTATCCATGTTGTAGCAATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACTGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCTTCTCTTGTGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTAA

Protein sequence

MDNQSIYLIHLNFFLHFPPNSYLGIAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC*
Homology
[Close]
BLAST of Csa2G236110 vs. TrEMBL
Match: A0A0A0LKZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G236110 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MDNQSIYLIHLNFFLHFPPNSYLGIAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGA 60
           MDNQSIYLIHLNFFLHFPPNSYLGIAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGA
Sbjct: 1   MDNQSIYLIHLNFFLHFPPNSYLGIAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGA 60

Query: 61  NAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIVIAINGDNVPQADDMNHAENED 120
           NAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIVIAINGDNVPQADDMNHAENED
Sbjct: 61  NAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIVIAINGDNVPQADDMNHAENED 120

Query: 121 ATLKMC 127
           ATLKMC
Sbjct: 121 ATLKMC 126

[Close]
BLAST of Csa2G236110 vs. NCBI nr
Match: gi|700206620|gb|KGN61739.1| (hypothetical protein Csa_2G236110 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.9e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MDNQSIYLIHLNFFLHFPPNSYLGIAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGA 60
           MDNQSIYLIHLNFFLHFPPNSYLGIAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGA
Sbjct: 1   MDNQSIYLIHLNFFLHFPPNSYLGIAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGA 60

Query: 61  NAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIVIAINGDNVPQADDMNHAENED 120
           NAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIVIAINGDNVPQADDMNHAENED
Sbjct: 61  NAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIVIAINGDNVPQADDMNHAENED 120

Query: 121 ATLKMC 127
           ATLKMC
Sbjct: 121 ATLKMC 126

The following BLAST results are available for this feature:
BLAST of Csa2G236110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKZ8_CUCSA1.3e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G236110 PE=4 SV=1[more]
BLAST of Csa2G236110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206620|gb|KGN61739.1|1.9e-62100.00hypothetical protein Csa_2G236110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G236110.1Csa2G236110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G236110CSPI02G11680Wild cucumber (PI 183967)cpicuB065
Csa2G236110CsGy2G011700Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G236110Wax gourdcuwgoB147
Csa2G236110Wax gourdcuwgoB181
Csa2G236110Wax gourdcuwgoB182
Csa2G236110Cucumber (Chinese Long) v2cucuB076
Csa2G236110Cucumber (Chinese Long) v2cucuB083
Csa2G236110Cucumber (Gy14) v1cgycuB118
Csa2G236110Cucumber (Gy14) v1cgycuB319
Csa2G236110Cucurbita maxima (Rimu)cmacuB118
Csa2G236110Cucurbita maxima (Rimu)cmacuB542
Csa2G236110Cucurbita maxima (Rimu)cmacuB588
Csa2G236110Cucurbita moschata (Rifu)cmocuB108
Csa2G236110Cucurbita moschata (Rifu)cmocuB531
Csa2G236110Cucurbita moschata (Rifu)cmocuB577
Csa2G236110Melon (DHL92) v3.5.1cumeB085
Csa2G236110Melon (DHL92) v3.5.1cumeB160
Csa2G236110Watermelon (Charleston Gray)cuwcgB091
Csa2G236110Watermelon (Charleston Gray)cuwcgB118
Csa2G236110Watermelon (Charleston Gray)cuwcgB127
Csa2G236110Watermelon (97103) v1cuwmB101
Csa2G236110Watermelon (97103) v1cuwmB139
Csa2G236110Watermelon (97103) v1cuwmB149
Csa2G236110Cucurbita pepo (Zucchini)cpecuB267
Csa2G236110Cucurbita pepo (Zucchini)cpecuB668
Csa2G236110Cucurbita pepo (Zucchini)cpecuB704
Csa2G236110Bottle gourd (USVL1VR-Ls)culsiB093
Csa2G236110Bottle gourd (USVL1VR-Ls)culsiB102
Csa2G236110Cucumber (Gy14) v2cgybcuB252
Csa2G236110Cucumber (Gy14) v2cgybcuB301
Csa2G236110Melon (DHL92) v3.6.1cumedB091
Csa2G236110Melon (DHL92) v3.6.1cumedB151
Csa2G236110Silver-seed gourdcarcuB0812
Csa2G236110Silver-seed gourdcarcuB0906
Csa2G236110Watermelon (97103) v2cuwmbB102
Csa2G236110Watermelon (97103) v2cuwmbB123
Csa2G236110Watermelon (97103) v2cuwmbB166