CSPI02G11680.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G11680.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 12007500 .. 12008045 (-)
Sequence length	357

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCCATAAATGGATTGAACGAAAAAGCAAAGCCAAAAGAAAGTCTGATATAGTTGTAAAAATGGACAATCAAAGCATCTATTTAATCCATCTTAATTTCTTCCTTCACTTCCCTCCTAATTCATACTTCATTTTTTTCCTTTTCTTTGCCCCCAAAGCACTTCTCCCTTCTCCCATTCACTCCTTTTTCTCCCGTCTCATTTCTAAGCCTCATAGCTAACTTTCAGTTAGGTATAGCAATTGTTCAAGTCACAAACGTCCTTATCCATGTTGTAGCAATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACGGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCCTCTCTTGCGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTAA

mRNA sequence

ATGTTATCCATAAATGGATTGAACGAAAAAGCAAAGCCAAAAGAAAGTATAGCAATTGTTCAAGTCACAAACGTCCTTATCCATGTTGTAGCAATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACGGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCCTCTCTTGCGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTAA

Coding sequence (CDS)

ATGTTATCCATAAATGGATTGAACGAAAAAGCAAAGCCAAAAGAAAGTATAGCAATTGTTCAAGTCACAAACGTCCTTATCCATGTTGTAGCAATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACGGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCCTCTCTTGCGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTAA

Homology

[Close]

BLAST of CSPI02G11680.1 vs. TrEMBL
Match: A0A0A0LKZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G236110 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-43
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1


Query: 17  IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL 76
           IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL
Sbjct: 25  IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL 84

Query: 77  AMAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC 119
            MAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC
Sbjct: 85  VMAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC 126

[Close]

BLAST of CSPI02G11680.1 vs. NCBI nr
Match: gi|700206620|gb|KGN61739.1| (hypothetical protein Csa_2G236110 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-43
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1


Query: 17  IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL 76
           IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL
Sbjct: 25  IAIVQVTNVLIHVVAIVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASL 84

Query: 77  AMAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC 119
            MAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC
Sbjct: 85  VMAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMC 126

The following BLAST results are available for this feature:

BLAST of CSPI02G11680.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G11680.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKZ8_CUCSA	1.3e-43	99.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G236110 PE=4 SV=1	[more]

BLAST of CSPI02G11680.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G11680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206620\|gb\|KGN61739.1\|	1.8e-43	99.02	hypothetical protein Csa_2G236110 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G11680	CSPI02G11680	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G11680.1	CSPI02G11680.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G11680.1.cds2	CSPI02G11680.1.cds2	CDS
CSPI02G11680.1.cds1	CSPI02G11680.1.cds1	CDS