CsaV3_2G014180 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G014180
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 11820752 .. 11821017 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACTGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCTTCTCTTGTGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTAA

mRNA sequence

ATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACTGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCTTCTCTTGTGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTA

Coding sequence (CDS)

ATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACTGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCTTCTCTTGTGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTA

Protein sequence

IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMCX
Homology
[Close]
BLAST of CsaV3_2G014180 vs. NCBI nr
Match: KGN61739.1 (hypothetical protein Csa_2G236110 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 3.1e-36
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV 60
           IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV
Sbjct: 40  IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV 99

Query: 61  IAINGDNVPQADDMNHAENEDATLKMC 88
           IAINGDNVPQADDMNHAENEDATLKMC
Sbjct: 100 IAINGDNVPQADDMNHAENEDATLKMC 126

[Close]
BLAST of CsaV3_2G014180 vs. TrEMBL
Match: tr|A0A0A0LKZ8|A0A0A0LKZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G236110 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-36
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV 60
           IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV
Sbjct: 40  IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV 99

Query: 61  IAINGDNVPQADDMNHAENEDATLKMC 88
           IAINGDNVPQADDMNHAENEDATLKMC
Sbjct: 100 IAINGDNVPQADDMNHAENEDATLKMC 126

The following BLAST results are available for this feature:
BLAST of CsaV3_2G014180 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61739.13.1e-36100.00hypothetical protein Csa_2G236110 [Cucumis sativus][more]
BLAST of CsaV3_2G014180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G014180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G014180 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKZ8|A0A0A0LKZ8_CUCSA2.1e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G236110 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G014180.1CsaV3_2G014180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G014180CSPI02G11680Wild cucumber (PI 183967)cpicucB080
CsaV3_2G014180CsGy2G011700Cucumber (Gy14) v2cgybcucB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G014180Cucumber (Gy14) v2cgybcucB323
CsaV3_2G014180Cucumber (Gy14) v1cgycucB337
CsaV3_2G014180Cucurbita maxima (Rimu)cmacucB0134
CsaV3_2G014180Cucurbita maxima (Rimu)cmacucB0608
CsaV3_2G014180Cucurbita maxima (Rimu)cmacucB0651
CsaV3_2G014180Cucurbita maxima (Rimu)cmacucB0701
CsaV3_2G014180Cucurbita maxima (Rimu)cmacucB0782
CsaV3_2G014180Cucurbita moschata (Rifu)cmocucB0123
CsaV3_2G014180Cucurbita moschata (Rifu)cmocucB0590
CsaV3_2G014180Cucurbita moschata (Rifu)cmocucB0637
CsaV3_2G014180Cucurbita moschata (Rifu)cmocucB0687
CsaV3_2G014180Cucurbita pepo (Zucchini)cpecucB0289
CsaV3_2G014180Cucurbita pepo (Zucchini)cpecucB0334
CsaV3_2G014180Cucurbita pepo (Zucchini)cpecucB0835
CsaV3_2G014180Cucurbita pepo (Zucchini)cpecucB0879
CsaV3_2G014180Wild cucumber (PI 183967)cpicucB332
CsaV3_2G014180Wild cucumber (PI 183967)cpicucB390
CsaV3_2G014180Bottle gourd (USVL1VR-Ls)cuclsiB104
CsaV3_2G014180Bottle gourd (USVL1VR-Ls)cuclsiB109
CsaV3_2G014180Melon (DHL92) v3.5.1cucmeB105
CsaV3_2G014180Melon (DHL92) v3.5.1cucmeB112
CsaV3_2G014180Melon (DHL92) v3.6.1cucmedB098
CsaV3_2G014180Melon (DHL92) v3.6.1cucmedB105
CsaV3_2G014180Watermelon (Charleston Gray)cucwcgB105
CsaV3_2G014180Watermelon (Charleston Gray)cucwcgB140
CsaV3_2G014180Watermelon (97103) v1cucwmB113
CsaV3_2G014180Watermelon (97103) v1cucwmB152
CsaV3_2G014180Watermelon (97103) v1cucwmB160
CsaV3_2G014180Watermelon (97103) v2cucwmbB167
CsaV3_2G014180Watermelon (97103) v2cucwmbB107
CsaV3_2G014180Watermelon (97103) v2cucwmbB126
CsaV3_2G014180Wax gourdcucwgoB154
CsaV3_2G014180Wax gourdcucwgoB184
CsaV3_2G014180Wax gourdcucwgoB187
CsaV3_2G014180Cucumber (Chinese Long) v3cuccucB095
CsaV3_2G014180Silver-seed gourdcarcucB0835
CsaV3_2G014180Silver-seed gourdcarcucB0929