CSPI01G09970 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G09970
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 6230748 .. 6230930 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

mRNA sequence

ATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

Coding sequence (CDS)

ATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG
Homology
[Close]
BLAST of CSPI01G09970 vs. TrEMBL
Match: A0A0A0LUJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051890 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.1e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1   MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 60
           MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS
Sbjct: 69  MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 128

[Close]
BLAST of CSPI01G09970 vs. NCBI nr
Match: gi|700209356|gb|KGN64452.1| (hypothetical protein Csa_1G051890 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1   MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 60
           MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS
Sbjct: 69  MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 128

The following BLAST results are available for this feature:
BLAST of CSPI01G09970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G09970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUJ4_CUCSA8.1e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051890 PE=4 SV=1[more]
BLAST of CSPI01G09970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G09970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209356|gb|KGN64452.1|1.2e-25100.00hypothetical protein Csa_1G051890 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G09970.1CSPI01G09970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G09970Csa1G051890Cucumber (Chinese Long) v2cpicuB000
CSPI01G09970CsaV3_1G010040Cucumber (Chinese Long) v3cpicucB001
CSPI01G09970Cucsa.134620Cucumber (Gy14) v1cgycpiB192
CSPI01G09970CsGy1G010010Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G09970Cucurbita maxima (Rimu)cmacpiB206
CSPI01G09970Cucurbita maxima (Rimu)cmacpiB401
CSPI01G09970Cucurbita moschata (Rifu)cmocpiB193
CSPI01G09970Cucurbita moschata (Rifu)cmocpiB383
CSPI01G09970Melon (DHL92) v3.5.1cpimeB024
CSPI01G09970Watermelon (Charleston Gray)cpiwcgB038
CSPI01G09970Watermelon (97103) v1cpiwmB010
CSPI01G09970Cucurbita pepo (Zucchini)cpecpiB517
CSPI01G09970Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G09970Melon (DHL92) v3.6.1cpimedB023
CSPI01G09970Silver-seed gourdcarcpiB0531
CSPI01G09970Silver-seed gourdcarcpiB1041
CSPI01G09970Watermelon (97103) v2cpiwmbB032
CSPI01G09970Cucurbita pepo (Zucchini)cpecpiB025