CSPI01G09970 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G09970
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 6230748 .. 6230930 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

mRNA sequence

ATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

Coding sequence (CDS)

ATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG
Homology
[Close]
BLAST of CSPI01G09970 vs. TrEMBL
Match: A0A0A0LUJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051890 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.1e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1   MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 60
           MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS
Sbjct: 69  MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 128

[Close]
BLAST of CSPI01G09970 vs. NCBI nr
Match: gi|700209356|gb|KGN64452.1| (hypothetical protein Csa_1G051890 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1   MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 60
           MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS
Sbjct: 69  MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 128

The following BLAST results are available for this feature:
BLAST of CSPI01G09970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G09970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUJ4_CUCSA8.1e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051890 PE=4 SV=1[more]
BLAST of CSPI01G09970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G09970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209356|gb|KGN64452.1|1.2e-25100.00hypothetical protein Csa_1G051890 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G09970.1CSPI01G09970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G09970Csa1G051890Cucumber (Chinese Long) v2cpicuB000
CSPI01G09970CsaV3_1G010040Cucumber (Chinese Long) v3cpicucB001
CSPI01G09970Cucsa.134620Cucumber (Gy14) v1cgycpiB192
CSPI01G09970CsGy1G010010Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G09970Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G09970Cucurbita maxima (Rimu)cmacpiB206
CSPI01G09970Cucurbita maxima (Rimu)cmacpiB401
CSPI01G09970Cucurbita moschata (Rifu)cmocpiB193
CSPI01G09970Cucurbita moschata (Rifu)cmocpiB383
CSPI01G09970Melon (DHL92) v3.5.1cpimeB024
CSPI01G09970Watermelon (Charleston Gray)cpiwcgB038
CSPI01G09970Watermelon (97103) v1cpiwmB010
CSPI01G09970Cucurbita pepo (Zucchini)cpecpiB517
CSPI01G09970Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G09970Melon (DHL92) v3.6.1cpimedB023
CSPI01G09970Silver-seed gourdcarcpiB0531
CSPI01G09970Silver-seed gourdcarcpiB1041
CSPI01G09970Watermelon (97103) v2cpiwmbB032