CSPI01G09970.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G09970.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 6230748 .. 6230930 (+)
Sequence length183
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

mRNA sequence

ATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

Coding sequence (CDS)

ATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG
Homology
[Close]
BLAST of CSPI01G09970.1 vs. TrEMBL
Match: A0A0A0LUJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051890 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.1e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1   MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 60
           MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS
Sbjct: 69  MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 128

[Close]
BLAST of CSPI01G09970.1 vs. NCBI nr
Match: gi|700209356|gb|KGN64452.1| (hypothetical protein Csa_1G051890 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1   MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 60
           MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS
Sbjct: 69  MNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 128

The following BLAST results are available for this feature:
BLAST of CSPI01G09970.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G09970.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUJ4_CUCSA8.1e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051890 PE=4 SV=1[more]
BLAST of CSPI01G09970.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G09970.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209356|gb|KGN64452.1|1.2e-25100.00hypothetical protein Csa_1G051890 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G09970CSPI01G09970gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G09970.1CSPI01G09970.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G09970.1.cds1CSPI01G09970.1.cds1CDS