CsaV3_1G010040 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G010040
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 6244468 .. 6244815 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAGAAGAGTGAGAGAGATAAGAAAGAAGAAGGCAAGGAAGAAAAGGAATCAATCGCTCAAGAGGCGCAAAGCGACCACCTAAGGAATCAGACAGTGTTAGAATTCCTAGATGAGGAGGTAAATAGGGAGAAAATAGGTGGAAGTCCTTTGGATTTCCGAATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

mRNA sequence

ATGAAAGAGAAGAGTGAGAGAGATAAGAAAGAAGAAGGCAAGGAAGAAAAGGAATCAATCGCTCAAGAGGCGCAAAGCGACCACCTAAGGAATCAGACAGTGTTAGAATTCCTAGATGAGGAGGTAAATAGGGAGAAAATAGGTGGAAGTCCTTTGGATTTCCGAATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

Coding sequence (CDS)

ATGAAAGAGAAGAGTGAGAGAGATAAGAAAGAAGAAGGCAAGGAAGAAAAGGAATCAATCGCTCAAGAGGCGCAAAGCGACCACCTAAGGAATCAGACAGTGTTAGAATTCCTAGATGAGGAGGTAAATAGGGAGAAAATAGGTGGAAGTCCTTTGGATTTCCGAATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

Protein sequence

MKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS

Homology

[Close]

BLAST of CsaV3_1G010040 vs. NCBI nr
Match: KGN64452.1 (hypothetical protein Csa_1G051890 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-44
Identity = 101/115 (87.83%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS 60
           MKEKS              IAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS
Sbjct: 14  MKEKSXXXXXXXXXXXXXXIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS 73

Query: 61  SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 116
           SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS
Sbjct: 74  SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 128

[Close]

BLAST of CsaV3_1G010040 vs. TrEMBL
Match: tr|A0A0A0LUJ4|A0A0A0LUJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051890 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.6e-44
Identity = 101/115 (87.83%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS 60
           MKEKS              IAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS
Sbjct: 14  MKEKSXXXXXXXXXXXXXXIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS 73

Query: 61  SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 116
           SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS
Sbjct: 74  SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 128

The following BLAST results are available for this feature:

BLAST of CsaV3_1G010040 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64452.1	2.4e-44	87.83	hypothetical protein Csa_1G051890 [Cucumis sativus]	[more]

BLAST of CsaV3_1G010040 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUJ4\|A0A0A0LUJ4_CUCSA	1.6e-44	87.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051890 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G010040.1	CsaV3_1G010040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G010040	CSPI01G09970	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G010040	Cucsa.134620	Cucumber (Gy14) v1	cgycucB196
CsaV3_1G010040	CsGy1G010010	Cucumber (Gy14) v2	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G010040	Silver-seed gourd	carcucB0529
CsaV3_1G010040	Silver-seed gourd	carcucB1046
CsaV3_1G010040	Cucurbita maxima (Rimu)	cmacucB0235
CsaV3_1G010040	Cucurbita maxima (Rimu)	cmacucB0474
CsaV3_1G010040	Cucurbita moschata (Rifu)	cmocucB0222
CsaV3_1G010040	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G010040	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G010040	Cucurbita pepo (Zucchini)	cpecucB0634
CsaV3_1G010040	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G010040	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G010040	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G010040	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G010040	Watermelon (97103) v1	cucwmB013
CsaV3_1G010040	Watermelon (97103) v2	cucwmbB030