Csa1G051890 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G051890
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 6210972 .. 6211358 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAAGGAGGCGAAGTGAGTTTTAAGATCTTCAGTATGAAAGAGAAGAGTGAGAGAGATAAGAAAGAAGAAGGCAAGGAAGAAAAGGAATCAATCGCTCAAGAGGCGCAAAGCGACCACCTAAGGAATCAGACAGTGTTAGAATTCCTAGATGAGGAGGTAAATAGGGAGAAAATAGGTGGAAGTCCTTTGGATTTCCGAATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

mRNA sequence

ATGAATCAAGGAGGCGAAGTGAGTTTTAAGATCTTCAGTATGAAAGAGAAGAGTGAGAGAGATAAGAAAGAAGAAGGCAAGGAAGAAAAGGAATCAATCGCTCAAGAGGCGCAAAGCGACCACCTAAGGAATCAGACAGTGTTAGAATTCCTAGATGAGGAGGTAAATAGGGAGAAAATAGGTGGAAGTCCTTTGGATTTCCGAATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

Coding sequence (CDS)

ATGAATCAAGGAGGCGAAGTGAGTTTTAAGATCTTCAGTATGAAAGAGAAGAGTGAGAGAGATAAGAAAGAAGAAGGCAAGGAAGAAAAGGAATCAATCGCTCAAGAGGCGCAAAGCGACCACCTAAGGAATCAGACAGTGTTAGAATTCCTAGATGAGGAGGTAAATAGGGAGAAAATAGGTGGAAGTCCTTTGGATTTCCGAATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

Protein sequence

MNQGGEVSFKIFSMKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS*

Homology

[Close]

BLAST of Csa1G051890 vs. TrEMBL
Match: A0A0A0LUJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051890 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 3.8e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MNQGGEVSFKIFSMKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKI 60
           MNQGGEVSFKIFSMKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKI
Sbjct: 1   MNQGGEVSFKIFSMKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKI 60

Query: 61  GGSPLDFRMNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPF 120
           GGSPLDFRMNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPF
Sbjct: 61  GGSPLDFRMNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPF 120

Query: 121 RRRGIEAS 129
           RRRGIEAS
Sbjct: 121 RRRGIEAS 128

[Close]

BLAST of Csa1G051890 vs. NCBI nr
Match: gi|700209356|gb|KGN64452.1| (hypothetical protein Csa_1G051890 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 5.4e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MNQGGEVSFKIFSMKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKI 60
           MNQGGEVSFKIFSMKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKI
Sbjct: 1   MNQGGEVSFKIFSMKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKI 60

Query: 61  GGSPLDFRMNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPF 120
           GGSPLDFRMNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPF
Sbjct: 61  GGSPLDFRMNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPF 120

Query: 121 RRRGIEAS 129
           RRRGIEAS
Sbjct: 121 RRRGIEAS 128

The following BLAST results are available for this feature:

BLAST of Csa1G051890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUJ4_CUCSA	3.8e-65	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051890 PE=4 SV=1	[more]

BLAST of Csa1G051890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209356\|gb\|KGN64452.1\|	5.4e-65	100.00	hypothetical protein Csa_1G051890 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G051890.1	Csa1G051890.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G051890	CSPI01G09970	Wild cucumber (PI 183967)	cpicuB000
Csa1G051890	Cucsa.134620	Cucumber (Gy14) v1	cgycuB188
Csa1G051890	CsGy1G010010	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G051890	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G051890	Cucurbita pepo (Zucchini)	cpecuB515
Csa1G051890	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G051890	Melon (DHL92) v3.6.1	cumedB022
Csa1G051890	Silver-seed gourd	carcuB0523
Csa1G051890	Silver-seed gourd	carcuB1017
Csa1G051890	Watermelon (97103) v2	cuwmbB032
Csa1G051890	Cucurbita maxima (Rimu)	cmacuB204
Csa1G051890	Cucurbita maxima (Rimu)	cmacuB397
Csa1G051890	Cucurbita moschata (Rifu)	cmocuB189
Csa1G051890	Cucurbita moschata (Rifu)	cmocuB380
Csa1G051890	Melon (DHL92) v3.5.1	cumeB027
Csa1G051890	Watermelon (Charleston Gray)	cuwcgB035
Csa1G051890	Watermelon (97103) v1	cuwmB008