CSPI01G04280 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAAAGGGTTATTATTAGTTTTTAAAGGTTTAAGAAAGGCTCTCTGTTTTGGCAGAGCAGAGAAACAGAGAAATGGCGGATTCGTTGGACGAAGACTGTGATTATCTCTTCAAGGCGGTTCTTACGGGCGATTCCGGCGTTGGAAAATCCAATCTCCTCTCTCGTTTCTCCAAAAATGAATTCCGATTCGACTCTAGACCTACGATCGGTGTCGAGTTCGCTTACCGGAATATTAAGGTCGCCGATAAACTCGTCAAAACCCAAATCTGGGACACCGCCGGCCAAGAAAGGTCAATCTTCTTCTCCCTTAATCTTTTTCTTCAAATAATTAGTTTCGAGAATTTCTTTCATTCGGTTTCCCTGTTTCGATTAAGTTCTAAGTGTTGTTCCACGAATAAATTATTTAGGTTGAATATGAAGTATTGATTAATTTTCAGCCATATGCTCAATGTTCAAATTTTCTAATATATTTTAATTTAAAATAATTTATTTGTTTTAAGAAATAACATAATTATTTACCAAATAAATCATTATTTGTTTCTTAGTTTGACAATCTCTAAGATAAGAGATTGAATTTTTTATATCAATTAGGAAGAAGCTAAACTCACATGAATTATCTTCCTACTCAAGTTAACTTGACAAATACGAGCATATATCATTTCTTTTAGTTTTTTTCTTTCCTATATTAAATTATGAGGATGTTTTCTTAAAATAAAGAAGTGATCTCTCTCGAAAAAAAAAAAAAATCTCTTTATATATCATCTTATAGTTCAACAATTCAACCTAGAAAGCTTAAGAACATAAATATTCCTCTAGGGTTTCTAGTCCAACAATGATTAAACCTATTAGGTAAACTTTTGGGATTTAGAAGAGAGGAAACTTTAATCTTTTTTTAGGGACCCATAGACCTAAAAGGAGAATTTAGACTTGTCCTTTTGTGATTGATTGAAGGCTAATACGTTCGTTTTTCTTTTGATAACATGTGAATAAAAGAATCAAATTTCTTATAAGTTGAACTAGGTTTATTTTGATTAATATTTTTTTTTAAAAAATGAAAGTTGGAGCTATAATCTCTCTTTTCATACCAAATATTATTCTTTTGAGTCATGAGCCACTGTCCAACATTAAATATGATAGTTTTAATGACGGTCTTTAAAAGTCATTATTTAAGGACAAAAAAAACTTTTCGTAAATTTGAACCCATTCTTTTAGGTTTGTTTGATTTAGAATCATTTTATATTAAGTTAAAGAGTTTGTCCCAATTAGTGTTGGAATGTTTTCTTTTTTCTACATTTTTCTTAATAATTTGTTTAATCATTTTAAATTTTTACTAATTTCAGCTACAAAAGATATAAACATTTTTTTAATAACTAAGTTATAAACTTTTTAGTTGTTCCACCAAATTTACTTCTGTTTTCATTGGACCAATCATTGTATGTGTGTGTATATATATATTACGATAAATTTTGTATTTCTTCAAAATAAAAAAGGTAGGCCTTTTCTTTTGTTAATTCATGTAGATCAATAGTGATGATATGATATTATACGTTTAGTCAATTGATGACTTAAGATGATATTAGGTTGTTGAAAAAAAATTAAGGTTAGAATTCTTTTATTATTATTAAAAAAATTACCGCGGTCCCATTCTTCTACCCTTTCCCGGGAGTCGATGACTATTCGTTAATTTTTTTAGTACAATTTAGAGTTGAAAGAATTTGAACTTAAAATCTCTTAGTCACATATTGAATATTTGATAGTAAGAGCAATTAATTGTGGAGCTTTTCTAATGAACTTTTAAAATTATTTACCATCTATTTGTGATAGACCAAAATAAACTGTGTATAACATGATACATATAGTCAAGAATAATAGTTTATCATGACCTATTATAGATATACTGTAGGTAAATATTTTGATTTATTTTATATATTAAAAAATATATATATATATTATTATTATTCCAATGAGGACTTGACACGTGAAAGGTTGTACGGTAAAGGGCATCCCCAAACAAAGGGCTTTAAGGCGACACCTTTATTTAAATCTTTCATACTTTTAAAGAAATTTTTAATTCACTCATTTGTTGTTGTTTTCTTTTTCTTTCTCTCCAAATTTTTTTCTTTTTTCTTTTTTATTGACAATTTTACAGTAAAAAATGGAAAAATTCCCCATTTTATATGTTACTTGAGAAAAGAATTTATTAGTATTAATTTTATAAATTTTGACAATTAAGCATATGAATGAAAATTGAGTAAGAGAAAGCGATATTTTGATTCATTAAAAAATAATTTAAAGAATGTTTAAAATAAGAAGTATGGTGTAAAGTTGCTTAAACCGTAGTTATTGAAGTATGTGTTTAAGGTATTATCGTTATTTAATCTAGAGTTATGAAATGTATGTTTACGAACATTTATGTTAATGAAAAATTGGTACTTTAATTAATCCTATAGTTTATATTTATTTCTTGGGGTTTGAGTTTCTTTTGTTTTTCCTTTCCAAAATATATAGTTTATTTGTTTGTTGCCTAACATCTAAATCTTAAATGTTGATATTGTAATCTTAATTTGAATGTAATAACACTGCATACAGATTTAGGGCAATTACAAGTTCTTATTATCGGGGAGCATTAGGAGCATTACTTGTTTACGACATAACTCGCGTGGCTACATTTGATAACATAAAGAAGTGGCTACGAGAGTTGAGAGAGTTTGGAAATCCGGAAATGGTGATCATTCTAGTTGGAAACAAATGCGACTTACATCAATCTCGAGAAGTACAAGAAGAAGAAGCGCGACATTTGGCCGAGTTGGAGAACTTGTTTTTCATGGAAACTTCTGCCAAAGATAATTTGAATGTGGAAGAGGCATTTCTTGAAATGGTTCGTAGGATCCACGCCATCGCCTCTCAAAAGACATTGGATTTGCATAAAAAATTTGAAAAGCTTGTTGCTTTTCCAAACGGAAAAGAGATTATTAGTATTCATGAAGTAACCCCAACCAAACACAATTCAAATTGTTGCTCTTTGTGAAAATTTAGTTTTGAATGGTGAGTTTAGCTTATAGTTTGCTTGAACTTATCTTTTATCCTATAAATATATTTTATGTTTAGCCTATAAATATTGTGTAATTTCATAGCAACTAAAACTATAAATATATACTATCACATTATATGTCTATATAAATTATGCTACC ATGGCGGATTCGTTGGACGAAGACTGTGATTATCTCTTCAAGGCGGTTCTTACGGGCGATTCCGGCGTTGGAAAATCCAATCTCCTCTCTCGTTTCTCCAAAAATGAATTCCGATTCGACTCTAGACCTACGATCGGTGTCGAGTTCGCTTACCGGAATATTAAGGTCGCCGATAAACTCGTCAAAACCCAAATCTGGGACACCGCCGGCCAAGAAAGATTTAGGGCAATTACAAGTTCTTATTATCGGGGAGCATTAGGAGCATTACTTGTTTACGACATAACTCGCGTGGCTACATTTGATAACATAAAGAAGTGGCTACGAGAGTTGAGAGAGTTTGGAAATCCGGAAATGGTGATCATTCTAGTTGGAAACAAATGCGACTTACATCAATCTCGAGAAGTACAAGAAGAAGAAGCGCGACATTTGGCCGAGTTGGAGAACTTGTTTTTCATGGAAACTTCTGCCAAAGATAATTTGAATGTGGAAGAGGCATTTCTTGAAATGGTTCGTAGGATCCACGCCATCGCCTCTCAAAAGACATTGGATTTGCATAAAAAATTTGAAAAGCTTGTTGCTTTTCCAAACGGAAAAGAGATTATTAGTATTCATGAAGTAACCCCAACCAAACACAATTCAAATTGTTGCTCTTTGTGA ATGGCGGATTCGTTGGACGAAGACTGTGATTATCTCTTCAAGGCGGTTCTTACGGGCGATTCCGGCGTTGGAAAATCCAATCTCCTCTCTCGTTTCTCCAAAAATGAATTCCGATTCGACTCTAGACCTACGATCGGTGTCGAGTTCGCTTACCGGAATATTAAGGTCGCCGATAAACTCGTCAAAACCCAAATCTGGGACACCGCCGGCCAAGAAAGATTTAGGGCAATTACAAGTTCTTATTATCGGGGAGCATTAGGAGCATTACTTGTTTACGACATAACTCGCGTGGCTACATTTGATAACATAAAGAAGTGGCTACGAGAGTTGAGAGAGTTTGGAAATCCGGAAATGGTGATCATTCTAGTTGGAAACAAATGCGACTTACATCAATCTCGAGAAGTACAAGAAGAAGAAGCGCGACATTTGGCCGAGTTGGAGAACTTGTTTTTCATGGAAACTTCTGCCAAAGATAATTTGAATGTGGAAGAGGCATTTCTTGAAATGGTTCGTAGGATCCACGCCATCGCCTCTCAAAAGACATTGGATTTGCATAAAAAATTTGAAAAGCTTGTTGCTTTTCCAAACGGAAAAGAGATTATTAGTATTCATGAAGTAACCCCAACCAAACACAATTCAAATTGTTGCTCTTTGTGA
BLAST of CSPI01G04280 vs. Swiss-Prot
Match: RAA6A_ARATH (Ras-related protein RABA6a OS=Arabidopsis thaliana GN=RABA6A PE=2 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 2.7e-80 Identity = 149/228 (65.35%), Postives = 177/228 (77.63%), Query Frame = 1
BLAST of CSPI01G04280 vs. Swiss-Prot
Match: RAA6B_ARATH (Ras-related protein RABA6b OS=Arabidopsis thaliana GN=RABA6B PE=2 SV=2) HSP 1 Score: 288.9 bits (738), Expect = 4.7e-77 Identity = 147/225 (65.33%), Postives = 175/225 (77.78%), Query Frame = 1
BLAST of CSPI01G04280 vs. Swiss-Prot
Match: RAA1H_ARATH (Ras-related protein RABA1h OS=Arabidopsis thaliana GN=RABA1H PE=2 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 6.6e-63 Identity = 120/213 (56.34%), Postives = 156/213 (73.24%), Query Frame = 1
BLAST of CSPI01G04280 vs. Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=1 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 4.3e-62 Identity = 121/212 (57.08%), Postives = 153/212 (72.17%), Query Frame = 1
BLAST of CSPI01G04280 vs. Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 9.5e-62 Identity = 121/213 (56.81%), Postives = 158/213 (74.18%), Query Frame = 1
BLAST of CSPI01G04280 vs. TrEMBL
Match: A0A0A0LS89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025010 PE=4 SV=1) HSP 1 Score: 440.7 bits (1132), Expect = 1.1e-120 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1
BLAST of CSPI01G04280 vs. TrEMBL
Match: Q6ZYK8_CUCSA (Putative Ras-related GTP-binding protein (Fragment) OS=Cucumis sativus GN=rasgbp PE=2 SV=1) HSP 1 Score: 405.6 bits (1041), Expect = 3.8e-110 Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 1
BLAST of CSPI01G04280 vs. TrEMBL
Match: A0A0B0MUD4_GOSAR (Ras-related RABA6b-like protein OS=Gossypium arboreum GN=F383_27648 PE=4 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 8.1e-84 Identity = 157/217 (72.35%), Postives = 181/217 (83.41%), Query Frame = 1
BLAST of CSPI01G04280 vs. TrEMBL
Match: A0A0D2T6L2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G004100 PE=4 SV=1) HSP 1 Score: 316.2 bits (809), Expect = 3.1e-83 Identity = 156/217 (71.89%), Postives = 181/217 (83.41%), Query Frame = 1
BLAST of CSPI01G04280 vs. TrEMBL
Match: B9T2M0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0170930 PE=4 SV=1) HSP 1 Score: 315.1 bits (806), Expect = 6.8e-83 Identity = 156/210 (74.29%), Postives = 177/210 (84.29%), Query Frame = 1
BLAST of CSPI01G04280 vs. TAIR10
Match: AT1G73640.1 (AT1G73640.1 RAB GTPase homolog A6A) HSP 1 Score: 299.7 bits (766), Expect = 1.5e-81 Identity = 149/228 (65.35%), Postives = 177/228 (77.63%), Query Frame = 1
BLAST of CSPI01G04280 vs. TAIR10
Match: AT1G18200.1 (AT1G18200.1 RAB GTPase homolog A6B) HSP 1 Score: 288.9 bits (738), Expect = 2.6e-78 Identity = 147/225 (65.33%), Postives = 175/225 (77.78%), Query Frame = 1
BLAST of CSPI01G04280 vs. TAIR10
Match: AT2G33870.1 (AT2G33870.1 RAB GTPase homolog A1H) HSP 1 Score: 241.9 bits (616), Expect = 3.7e-64 Identity = 120/213 (56.34%), Postives = 156/213 (73.24%), Query Frame = 1
BLAST of CSPI01G04280 vs. TAIR10
Match: AT1G06400.1 (AT1G06400.1 Ras-related small GTP-binding family protein) HSP 1 Score: 239.2 bits (609), Expect = 2.4e-63 Identity = 121/212 (57.08%), Postives = 153/212 (72.17%), Query Frame = 1
BLAST of CSPI01G04280 vs. TAIR10
Match: AT5G60860.1 (AT5G60860.1 RAB GTPase homolog A1F) HSP 1 Score: 237.3 bits (604), Expect = 9.1e-63 Identity = 118/213 (55.40%), Postives = 155/213 (72.77%), Query Frame = 1
BLAST of CSPI01G04280 vs. NCBI nr
Match: gi|449439127|ref|XP_004137339.1| (PREDICTED: ras-related protein RABA6a-like [Cucumis sativus]) HSP 1 Score: 440.7 bits (1132), Expect = 1.5e-120 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1
BLAST of CSPI01G04280 vs. NCBI nr
Match: gi|659106943|ref|XP_008453474.1| (PREDICTED: ras-related protein RABA6a-like [Cucumis melo]) HSP 1 Score: 423.3 bits (1087), Expect = 2.5e-115 Identity = 210/217 (96.77%), Postives = 212/217 (97.70%), Query Frame = 1
BLAST of CSPI01G04280 vs. NCBI nr
Match: gi|46193751|emb|CAG25544.1| (putative Ras-related GTP-binding protein [Cucumis sativus]) HSP 1 Score: 405.6 bits (1041), Expect = 5.5e-110 Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 1
BLAST of CSPI01G04280 vs. NCBI nr
Match: gi|1000940656|ref|XP_015582916.1| (PREDICTED: ras-related protein RABA6b [Ricinus communis]) HSP 1 Score: 325.5 bits (833), Expect = 7.2e-86 Identity = 162/222 (72.97%), Postives = 186/222 (83.78%), Query Frame = 1
BLAST of CSPI01G04280 vs. NCBI nr
Match: gi|728819253|gb|KHG03114.1| (Ras-related RABA6b -like protein [Gossypium arboreum]) HSP 1 Score: 318.2 bits (814), Expect = 1.2e-83 Identity = 157/217 (72.35%), Postives = 181/217 (83.41%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |