CSPI01G00580 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G00580
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 328704 .. 329258 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTTGGTTCAATCTTAGGCGTTCAAAATGCGGACTTTGGCAAAGTGGAGGGTTGTGATGGTGGAGGTGTAATGGTCAACATAGATCGGCGTTCTTTTTACACGTACAGCACTCTAATGCTTATCCAAGATTTGTCGAATTGCAAATAAAGAAACCACTTTTTCTTCTTTCTTCTTATCCTAAGTTTACACTGCTGACCAGTGGCGGGCCATGCTAACGTGCGCCGGACCCGCATCTTGCTTACTGCTTTTGTCTTTACTTTCTTTTGTTGTTGATGTGGCGCCATCTCATGGGTTCTTCGCGTGCTGCCGTGGCGGCCACGAACTGAATCTGCTTCGTCTCTTATGCTTTTTGTGTATATTCAATTTGATAGAGTGGGCCGTTAGGTGCATGCGTGCAGGCTCAGTCCATTGCTAGAATTCACAAGCACTTCTGGCGTATTTCAGTTGGGAATTCTCCTAATAATATGCATTGTGGCTTTTAGTTTTTCTTAATTCAATCCTTAGGAGGTAGATGGGATGTTGGAAGAAGATCCAGCCATTAGTATATGA

mRNA sequence

ATGTCGTTTGGTTCAATCTTAGGCGTTCAAAATGCGGACTTTGGCAAAGTGGAGGGTTGTGATGGTGGAGGTGTAATGGTCAACATAGATCGGCTTTACACTGCTGACCAGTGGCGGGCCATGCTAACGTGCGCCGGACCCGCATCTTGCTTACTGCTTTTGTCTTTACTTTCTTTTGTTGTTGATGTGGCGCCATCTCATGGGTTCTTCGCGTGCTGCCGTGGCGGCCACGAACTGAATCTGCTTCGTCTCTTATGCTTTTTGTGTATATTCAATTTGATAGAGTGGGCCGTTAGGTGCATGCGTGCAGGCTCAGAGGTAGATGGGATGTTGGAAGAAGATCCAGCCATTAGTATATGA

Coding sequence (CDS)

ATGTCGTTTGGTTCAATCTTAGGCGTTCAAAATGCGGACTTTGGCAAAGTGGAGGGTTGTGATGGTGGAGGTGTAATGGTCAACATAGATCGGCTTTACACTGCTGACCAGTGGCGGGCCATGCTAACGTGCGCCGGACCCGCATCTTGCTTACTGCTTTTGTCTTTACTTTCTTTTGTTGTTGATGTGGCGCCATCTCATGGGTTCTTCGCGTGCTGCCGTGGCGGCCACGAACTGAATCTGCTTCGTCTCTTATGCTTTTTGTGTATATTCAATTTGATAGAGTGGGCCGTTAGGTGCATGCGTGCAGGCTCAGAGGTAGATGGGATGTTGGAAGAAGATCCAGCCATTAGTATATGA
Homology
[Close]
BLAST of CSPI01G00580 vs. TrEMBL
Match: A0A0A0LRT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002070 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 5.6e-63
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1 

Query: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60
           MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV
Sbjct: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60

Query: 61  VDVAPSHGFFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 120
           VDVAPSHG FACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI
Sbjct: 61  VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 119

[Close]
BLAST of CSPI01G00580 vs. NCBI nr
Match: gi|700208391|gb|KGN63487.1| (hypothetical protein Csa_1G002070 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 8.0e-63
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1 

Query: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60
           MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV
Sbjct: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60

Query: 61  VDVAPSHGFFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 120
           VDVAPSHG FACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI
Sbjct: 61  VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 119

The following BLAST results are available for this feature:
BLAST of CSPI01G00580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G00580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRT4_CUCSA5.6e-6399.16Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002070 PE=4 SV=1[more]
BLAST of CSPI01G00580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G00580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208391|gb|KGN63487.1|8.0e-6399.16hypothetical protein Csa_1G002070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G00580.1CSPI01G00580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G00580Csa1G002070Cucumber (Chinese Long) v2cpicuB000
CSPI01G00580CsaV3_1G000610Cucumber (Chinese Long) v3cpicucB001
CSPI01G00580CsGy1G000590Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G00580Cucumber (Gy14) v1cgycpiB229
CSPI01G00580Cucurbita maxima (Rimu)cmacpiB049
CSPI01G00580Cucurbita maxima (Rimu)cmacpiB085
CSPI01G00580Cucurbita maxima (Rimu)cmacpiB227
CSPI01G00580Cucurbita moschata (Rifu)cmocpiB040
CSPI01G00580Cucurbita moschata (Rifu)cmocpiB079
CSPI01G00580Cucurbita moschata (Rifu)cmocpiB213
CSPI01G00580Cucurbita moschata (Rifu)cmocpiB396
CSPI01G00580Cucumber (Chinese Long) v2cpicuB009
CSPI01G00580Cucumber (Chinese Long) v2cpicuB024
CSPI01G00580Melon (DHL92) v3.5.1cpimeB015
CSPI01G00580Melon (DHL92) v3.5.1cpimeB055
CSPI01G00580Melon (DHL92) v3.5.1cpimeB079
CSPI01G00580Watermelon (Charleston Gray)cpiwcgB053
CSPI01G00580Watermelon (Charleston Gray)cpiwcgB068
CSPI01G00580Watermelon (Charleston Gray)cpiwcgB083
CSPI01G00580Watermelon (97103) v1cpiwmB029
CSPI01G00580Watermelon (97103) v1cpiwmB099
CSPI01G00580Cucurbita pepo (Zucchini)cpecpiB361
CSPI01G00580Cucurbita pepo (Zucchini)cpecpiB515
CSPI01G00580Cucurbita pepo (Zucchini)cpecpiB656
CSPI01G00580Bottle gourd (USVL1VR-Ls)cpilsiB041
CSPI01G00580Bottle gourd (USVL1VR-Ls)cpilsiB070
CSPI01G00580Melon (DHL92) v3.6.1cpimedB014
CSPI01G00580Melon (DHL92) v3.6.1cpimedB049
CSPI01G00580Cucumber (Gy14) v2cgybcpiB013
CSPI01G00580Cucumber (Gy14) v2cgybcpiB095
CSPI01G00580Silver-seed gourdcarcpiB0396
CSPI01G00580Silver-seed gourdcarcpiB1083
CSPI01G00580Cucumber (Chinese Long) v3cpicucB015
CSPI01G00580Cucumber (Chinese Long) v3cpicucB028
CSPI01G00580Watermelon (97103) v2cpiwmbB051
CSPI01G00580Watermelon (97103) v2cpiwmbB065
CSPI01G00580Watermelon (97103) v2cpiwmbB079
CSPI01G00580Wax gourdcpiwgoB061
CSPI01G00580Wax gourdcpiwgoB080
CSPI01G00580Wax gourdcpiwgoB081
CSPI01G00580Wild cucumber (PI 183967)cpicpiB003
CSPI01G00580Wild cucumber (PI 183967)cpicpiB014