Csa1G002070 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G002070
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 327461 .. 328015 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTTGGTTCAATCTTAGGCGTTCAAAATGCGGACTTTGGCAAAGTGGAGGGTTGTGATGGTGGAGGTGTAATGGTCAACATAGATCGGCGTTCTTTTTACACGTACAGCACTCTAATGCTTATCCAAGATTTGTCGAATTGCAAATAAAGAAACCACTTTTTCTTCTTTCTTCTTATCCTAAGTTTACACTGCTGACCAGTGGCGGGCCATGCTAACGTGCGCCGGACCCGCATCTTGCTTACTGCTTTTGTCTTTACTTTCTTTTGTTGTTGATGTGGCGCCATCTCATGGGCTCTTCGCGTGCTGCCGTGGCGGCCACGAACTGAATCTGCTTCGTCTCTTATGCTTTTTGTGTATATTCAATTTGATAGAGTGGGCCGTTAGGTGCATGCGTGCAGGCTCAGTCCATTGCTAGAATTCACAAGCACTTCTGGCGTATTTCAGTTGGGAATTCTCCTAATAATATGCATTGTGGCTTTTAGTTTTTCTTAATTCAATCCTTAGGAGGTAGATGGGATGTTGGAAGAAGATCCAGCCATTAGTATATGA

mRNA sequence

ATGTCGTTTGGTTCAATCTTAGGCGTTCAAAATGCGGACTTTGGCAAAGTGGAGGGTTGTGATGGTGGAGGTGTAATGGTCAACATAGATCGGCTTTACACTGCTGACCAGTGGCGGGCCATGCTAACGTGCGCCGGACCCGCATCTTGCTTACTGCTTTTGTCTTTACTTTCTTTTGTTGTTGATGTGGCGCCATCTCATGGGCTCTTCGCGTGCTGCCGTGGCGGCCACGAACTGAATCTGCTTCGTCTCTTATGCTTTTTGTGTATATTCAATTTGATAGAGTGGGCCGTTAGGTGCATGCGTGCAGGCTCAGAGGTAGATGGGATGTTGGAAGAAGATCCAGCCATTAGTATATGA

Coding sequence (CDS)

ATGTCGTTTGGTTCAATCTTAGGCGTTCAAAATGCGGACTTTGGCAAAGTGGAGGGTTGTGATGGTGGAGGTGTAATGGTCAACATAGATCGGCTTTACACTGCTGACCAGTGGCGGGCCATGCTAACGTGCGCCGGACCCGCATCTTGCTTACTGCTTTTGTCTTTACTTTCTTTTGTTGTTGATGTGGCGCCATCTCATGGGCTCTTCGCGTGCTGCCGTGGCGGCCACGAACTGAATCTGCTTCGTCTCTTATGCTTTTTGTGTATATTCAATTTGATAGAGTGGGCCGTTAGGTGCATGCGTGCAGGCTCAGAGGTAGATGGGATGTTGGAAGAAGATCCAGCCATTAGTATATGA

Protein sequence

MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFVVDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI*
Homology
[Close]
BLAST of Csa1G002070 vs. TrEMBL
Match: A0A0A0LRT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002070 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 5.6e-63
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 

Query: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60
           MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV
Sbjct: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60

Query: 61  VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 120
           VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI
Sbjct: 61  VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 119

[Close]
BLAST of Csa1G002070 vs. NCBI nr
Match: gi|700208391|gb|KGN63487.1| (hypothetical protein Csa_1G002070 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 8.0e-63
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 

Query: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60
           MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV
Sbjct: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60

Query: 61  VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 120
           VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI
Sbjct: 61  VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 119

The following BLAST results are available for this feature:
BLAST of Csa1G002070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRT4_CUCSA5.6e-63100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002070 PE=4 SV=1[more]
BLAST of Csa1G002070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208391|gb|KGN63487.1|8.0e-63100.00hypothetical protein Csa_1G002070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G002070.1Csa1G002070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G002070CSPI01G00580Wild cucumber (PI 183967)cpicuB000
Csa1G002070CsGy1G000590Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G002070Melon (DHL92) v3.5.1cumeB022
Csa1G002070Melon (DHL92) v3.5.1cumeB054
Csa1G002070Melon (DHL92) v3.5.1cumeB078
Csa1G002070Watermelon (Charleston Gray)cuwcgB052
Csa1G002070Watermelon (Charleston Gray)cuwcgB065
Csa1G002070Watermelon (Charleston Gray)cuwcgB081
Csa1G002070Watermelon (97103) v1cuwmB028
Csa1G002070Cucurbita pepo (Zucchini)cpecuB361
Csa1G002070Cucurbita pepo (Zucchini)cpecuB513
Csa1G002070Cucurbita pepo (Zucchini)cpecuB653
Csa1G002070Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G002070Bottle gourd (USVL1VR-Ls)culsiB041
Csa1G002070Cucumber (Gy14) v2cgybcuB014
Csa1G002070Cucumber (Gy14) v2cgybcuB096
Csa1G002070Melon (DHL92) v3.6.1cumedB018
Csa1G002070Melon (DHL92) v3.6.1cumedB046
Csa1G002070Silver-seed gourdcarcuB0391
Csa1G002070Silver-seed gourdcarcuB1062
Csa1G002070Watermelon (97103) v2cuwmbB050
Csa1G002070Watermelon (97103) v2cuwmbB063
Csa1G002070Watermelon (97103) v2cuwmbB078
Csa1G002070Wax gourdcuwgoB061
Csa1G002070Wax gourdcuwgoB078
Csa1G002070Cucumber (Chinese Long) v2cucuB002
Csa1G002070Cucumber (Chinese Long) v2cucuB014
Csa1G002070Watermelon (97103) v1cuwmB094
Csa1G002070Cucumber (Gy14) v1cgycuB224
Csa1G002070Cucurbita maxima (Rimu)cmacuB048
Csa1G002070Cucurbita maxima (Rimu)cmacuB086
Csa1G002070Cucurbita maxima (Rimu)cmacuB225
Csa1G002070Cucurbita moschata (Rifu)cmocuB076
Csa1G002070Cucurbita moschata (Rifu)cmocuB037
Csa1G002070Cucurbita moschata (Rifu)cmocuB211
Csa1G002070Cucurbita moschata (Rifu)cmocuB393