CsaV3_1G000610 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G000610
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 352593 .. 353147 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTTGGTTCAATCTTAGGCGTTCAAAATGCGGACTTTGGCAAAGTGGAGGGTTGTGATGGTGGAGGTGTAATGGTCAACATAGATCGGCGTTCTTTTTACACGTACAGCACTCTAATGCTTATCCAAGATTTGTCGAATTGCAAATAAAGAAACCACTTTTTCTTCTTTCTTCTTATCCTAAGTTTACACTGCTGACCAGTGGCGGGCCATGCTAACGTGCGCCGGACCCGCATCTTGCTTACTGCTTTTGTCTTTACTTTCTTTTGTTGTTGATGTGGCGCCATCTCATGGGCTCTTCGCGTGCTGCCGTGGCGGCCACGAACTGAATCTGCTTCGTCTCTTATGCTTTTTGTGTATATTCAATTTGATAGAGTGGGCCGTTAGGTGCATGCGTGCAGGCTCAGTCCATTGCTAGAATTCACAAGCACTTCTGGCGTATTTCAGTTGGGAATTCTCCTAATAATATGCATTGTGGCTTTTAGTTTTTCTTAATTCAATCCTTAGGAGGTAGATGGGATGTTGGAAGAAGATCCAGCCATTAGTATATGA

mRNA sequence

ATGTCGTTTGGTTCAATCTTAGGCGTTCAAAATGCGGACTTTGGCAAAGTGGAGGGTTGTGATGGTGGAGGTGTAATGGTCAACATAGATCGGCTTTACACTGCTGACCAGTGGCGGGCCATGCTAACGTGCGCCGGACCCGCATCTTGCTTACTGCTTTTGTCTTTACTTTCTTTTGTTGTTGATGTGGCGCCATCTCATGGGCTCTTCGCGTGCTGCCGTGGCGGCCACGAACTGAATCTGCTTCGTCTCTTATGCTTTTTGTGTATATTCAATTTGATAGAGTGGGCCGTTAGGTGCATGCGTGCAGGCTCAGAGGTAGATGGGATGTTGGAAGAAGATCCAGCCATTAGTATATGA

Coding sequence (CDS)

ATGTCGTTTGGTTCAATCTTAGGCGTTCAAAATGCGGACTTTGGCAAAGTGGAGGGTTGTGATGGTGGAGGTGTAATGGTCAACATAGATCGGCTTTACACTGCTGACCAGTGGCGGGCCATGCTAACGTGCGCCGGACCCGCATCTTGCTTACTGCTTTTGTCTTTACTTTCTTTTGTTGTTGATGTGGCGCCATCTCATGGGCTCTTCGCGTGCTGCCGTGGCGGCCACGAACTGAATCTGCTTCGTCTCTTATGCTTTTTGTGTATATTCAATTTGATAGAGTGGGCCGTTAGGTGCATGCGTGCAGGCTCAGAGGTAGATGGGATGTTGGAAGAAGATCCAGCCATTAGTATATGA

Protein sequence

MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFVVDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI
Homology
[Close]
BLAST of CsaV3_1G000610 vs. NCBI nr
Match: KGN63487.1 (hypothetical protein Csa_1G002070 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 7.0e-63
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60
           MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV
Sbjct: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60

Query: 61  VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 120
           VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI
Sbjct: 61  VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 119

[Close]
BLAST of CsaV3_1G000610 vs. TrEMBL
Match: tr|A0A0A0LRT4|A0A0A0LRT4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002070 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.6e-63
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60
           MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV
Sbjct: 1   MSFGSILGVQNADFGKVEGCDGGGVMVNIDRLYTADQWRAMLTCAGPASCLLLLSLLSFV 60

Query: 61  VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 120
           VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI
Sbjct: 61  VDVAPSHGLFACCRGGHELNLLRLLCFLCIFNLIEWAVRCMRAGSEVDGMLEEDPAISI 119

The following BLAST results are available for this feature:
BLAST of CsaV3_1G000610 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63487.17.0e-63100.00hypothetical protein Csa_1G002070 [Cucumis sativus][more]
BLAST of CsaV3_1G000610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G000610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G000610 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRT4|A0A0A0LRT4_CUCSA4.6e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002070 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G000610.1CsaV3_1G000610.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G000610CSPI01G00580Wild cucumber (PI 183967)cpicucB001
CsaV3_1G000610CsGy1G000590Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G000610Silver-seed gourdcarcucB0395
CsaV3_1G000610Silver-seed gourdcarcucB0466
CsaV3_1G000610Silver-seed gourdcarcucB1050
CsaV3_1G000610Silver-seed gourdcarcucB1095
CsaV3_1G000610Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G000610Cucumber (Gy14) v2cgybcucB010
CsaV3_1G000610Cucumber (Gy14) v2cgybcucB101
CsaV3_1G000610Cucumber (Gy14) v1cgycucB236
CsaV3_1G000610Cucumber (Gy14) v1cgycucB593
CsaV3_1G000610Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G000610Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G000610Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G000610Cucurbita maxima (Rimu)cmacucB0256
CsaV3_1G000610Cucurbita maxima (Rimu)cmacucB0273
CsaV3_1G000610Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G000610Cucurbita moschata (Rifu)cmocucB0243
CsaV3_1G000610Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G000610Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G000610Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G000610Cucurbita moschata (Rifu)cmocucB0470
CsaV3_1G000610Cucurbita pepo (Zucchini)cpecucB0029
CsaV3_1G000610Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G000610Cucurbita pepo (Zucchini)cpecucB0630
CsaV3_1G000610Cucurbita pepo (Zucchini)cpecucB0739
CsaV3_1G000610Cucurbita pepo (Zucchini)cpecucB0804
CsaV3_1G000610Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G000610Wild cucumber (PI 183967)cpicucB014
CsaV3_1G000610Wild cucumber (PI 183967)cpicucB126
CsaV3_1G000610Bottle gourd (USVL1VR-Ls)cuclsiB039
CsaV3_1G000610Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G000610Melon (DHL92) v3.5.1cucmeB019
CsaV3_1G000610Melon (DHL92) v3.5.1cucmeB084
CsaV3_1G000610Melon (DHL92) v3.6.1cucmedB017
CsaV3_1G000610Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G000610Melon (DHL92) v3.6.1cucmedB077
CsaV3_1G000610Watermelon (Charleston Gray)cucwcgB056
CsaV3_1G000610Watermelon (Charleston Gray)cucwcgB072
CsaV3_1G000610Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G000610Watermelon (97103) v1cucwmB032
CsaV3_1G000610Watermelon (97103) v1cucwmB105
CsaV3_1G000610Watermelon (97103) v2cucwmbB061
CsaV3_1G000610Watermelon (97103) v2cucwmbB048
CsaV3_1G000610Watermelon (97103) v2cucwmbB076
CsaV3_1G000610Wax gourdcucwgoB015
CsaV3_1G000610Wax gourdcucwgoB062
CsaV3_1G000610Wax gourdcucwgoB086
CsaV3_1G000610Wax gourdcucwgoB087
CsaV3_1G000610Cucumber (Chinese Long) v3cuccucB003
CsaV3_1G000610Cucumber (Chinese Long) v3cuccucB017