Bhi04G000068 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G000068
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Transcription initiation factor TFIID subunit 10
Location	chr4 : 2114558 .. 2119228 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCAATGGGTTTTCTATATATTGAGGGCAAAATGTAATGCCATTAGCAATTCAAACGCGCTTGATTTCGAAGAGAGGGAAAACGAAGAAGAAGATGAACCATAGCCAACAAGCTACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTGTAAGATCTCATTTCGATTCTTCTTAACCCAAACTCGCCTTTTTCCCCCCACGCGTTTTTCTGCAAGTTCAAATCATGTCGGTGTTCTTCTTTTTGGGCTATCGTTTTACAGATTCCCGACGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGTAGGTACCTTTTCGTTTGTTTTTATATTTATCGTTCATCAAAACCCTAGGTCTAAAACACGGTCTTTCGACTGACAGATGAGATGAATATATCTTTCTTCTAATGCTATGATTGGTGATGGTTTCTTTTCACAATTTAATCGTACTTGGAGAATTTTCCATTCATTTTCTTGGTTCTTGACTGTTAATATCGATCAACGTGAAGCATAACGAGGCCGTGGGTTTTAGATGGGGGATTTCTTATTTTGGGTATTTTTTTTTTGTTCTAAAGAGACAATGTTAACTATTGTTGCTGATTTTTTTGTTGGGAAGTTGCCTTTATTAATGAACTGAGGATGAGATTGGAGGAGCAGGATTTTTTTTTTTTTTTTTTTAAATCACAGTTCCCAACTCATTCCCTTTAAAGAAATGGGGAATCTTTACTCTGGTATCGGGGTTCTTAGTGGTCTAATTCTTGATGTGTACTTTGTAGGTCAGACAATATATTCTTGCTCGGTTTGTTGTGTTATAGTGTTATGAGACATGAAGATGGCCCTTTTATTGTTCGTAGTGGTATTCATGGTGGCATCATTCATGCGGACTATTGATTCAACGAGTGTGCATTTCTATACTGAGAATTGTGCATTTGGGAAGAGTAGAGAAGTTAATCTAATTCAAAGAATACTCCGTGTACTTCACCATCTTTGTAATTGAGCTGAGATGATTTCTTTGAAGTTAATAAATTTCGTCCTTTCTTTTCCAATGATTCTTCTACTCGTCTCCCATTTCATTTCTTACCTTTTTTTTCCCCATGAAAGTTGCATGTCTAAAATTTTGAATAATGGAGAGGTTATAAGTCATTTGAGATCTTTGATTTTTGTGAGATGAATTTCTCAACCTTGGCCCGGTAAATTGCTTTCTTGGTAAATTGGTTTTCATTTTTGATTAGCTTTAAATGCATTCTCGATGATATGTGATGTTTGTAATTAGAAATTGGATTTCTCCTTGTTGTGAAGATTAGTTTACTGTTTCTTATCAAGCTTCACTTTTGTAGGATCAGGCTTGTTGCTGTTGCGACGCAGAAGTTCGTTGCGGATGTTGCAAGTGATGCCCTCCAGTATGCTTTGTTCTTCTTTCTCATTTATTTGAGGCGTGCAAGTAGGATATGGTCATAACTTGGTTGGAGACCTTATAAAAAAAGCTTGCATTGTAGAATCTTCATTTTAATTACATAATCACAGGAATGCAATTGGTTAATTTGATGGGATTAACTCAAGAGTTCGAGGACCAATTTTCTGAAACAATCTTATGCCACAGAATATTACTTTTTATTGTTTTACAACCAACAATCTTAATTGAAAAAGATCAGCTCTATAGGTTGTACAATTATGTCCTCGAGTTTTATAGTGTTACAACCACTTAGCTCTTATCTCTTAAAGCAACAAGAAAGGCCCTAATGCACAACCAGCGGTTATTACATGGCATGGTAATTGTCTCTCACTTAACAAGATGAGACCCTCATTCCTCCATAATTCCCTTCCCAAAAGTCCTTTACAATCCTTTTCTACTTAAAACACAAAGACTAAGAAACCCTTAATAAGGATAGAAAATAGATAGGGATCCCACTAAAGGTTAGTGTTTAGGAGTGTGCAGCCCCTAAAAGTCTTCAGCCCAAGTTTGACACTAAATTTGCCTGTTTATTATGGGCAGTAGCAAAATGGGTTGATCTAAAGTGTGGGGCTTAGCTCTAAGTGCTTTTATTTCGACAGTCATCCCAAATGGCCTCATTGAAAGTTGGAGAAGTGGTTTCCTCTGTCACATTATCCTTCAAATTGGGGCCAATCCCCCTCTATTAAAGGTTGGTCAATAATCAATTCCCTTTACGGGAACCTCTTTCAGATCTGTCTTTGAAGATCTTGAAAAATGCTGATCTCCCACCCTTTGAGAACAAGGTTTTCACCTATCTCCCATAAATGATTGGTGCTCCTAAATATGTCATGGGAAGTAAGAAACCTCACGACTGAATATACAATTTCACCTTCCACGATTATCAGGATTTCGAGAAGAGACTTTCTTTAGTTGATTGATTTGATTGGTTTTATTAAGTAGATTCACTCTCATGCAACCTATTAAGGGTTTTTTTTAAGATAAATTATTTTTATTCTTATTTATTTATTTATTTCTTTTAAAATTAATATATTTTTTTTATTGCTTTCTTTAGTCTGCCTCATATTTTGTGGGCTCCATTTTTTGAAGTTTTTCATTTAAAAAACCTATTTTGTTGTGCAATGTAGGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGATAAAAGAGATAAACAACAAAAGGTGCATCTTTCGTAACTTAGGGTCTCTTGATTGATAAATTATTTGGCCAATCTAAGATTCTGCTGGTTCAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCAAAGGCACTTCGTGAGGTAAGCTCGAAATGTTATTTACTTCTCATCAAGCACAATGGATGATTCATATAGAAATAATAGATTAATTTTGTTATGCACTCTCACTTTTAGGTGGTGCCATGGGTGTTTTGTTTTTTCTTTGCCGGGGGGGGGGGGGATGCTTGGAATGGATGATTCATATAGACATAAGACATTAATTTTGTTATACACTCTCACTTTTGGCTATGGGTGGGTTGTGGGCGATAAATTATCAATGTCACTTCAGGCTTCAAAGTTGATGTTGGCAGGGGAGTTCTTAAAAGAGTTGTGATCTGTCCTAAAGGTGTCTGCTTGTTTTGTGTAATAAATTTCTGTCTGGTTGTAATCTTGTGAAGAATTTGTGATTTTTAGTTCTTCTAATTGTATGGTGCATCCTTTGTCATTGATACCCTTTTGAAGATAGACACTTGAAGATCTAGCTCCTTATCCATAACTAACTGCCTCGTTGCTACTTGATGAACAGTATGGCGTGAATGTGAAACATCAGGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATAATGGTTATAATATCTCATTGTTGTCTGTGTTCGTGAATATACTGAATTACTGATGCATATAGTTCAGGGTTGGAGTATTTCTTGCAGACTAATTTTCTCTGCCGTGCACAGTCATGAGTCATGTTGTACATTATAGCATTGCTTTGAATAACAAATTAAGTAGCCGTGTTTTCCTAGTCGGATTCGGTTACTACTTCTATAGCGAGGCCTTAGCCTTTTGGAACTATCATAGCGGCAGATATATTCAACATTTTCTACTTGTCTATTGAATGAAACTGTGCATAATGAAAAACCAAAACGTCATTCTTGTTCATACAAGGTTATGTAAAGATGGTTAAACCACATCCTGGCGCTATCAGAACGCATTCTCCATGGATTTTAAACGTCAATTTACTTTTAATTGTTTCAGCCTTGGGATTAAATAAGAAGGGGACTTTTGTAGGTGACATTTCTATTGATTCTGAATGGGATTTGCAGTTCACTTACCAAGTTTGTGCTTTATACAATACTTGGTCAGAGGGACAGAATAGTTCTTTCAAGACTTTTCATCTCCAATTTTGAACAATTCAATAGTTGCCAGCTTGATGAAATGATCCCATGCAGAGATTTCGAAGCCCTTCTGATCTCATGCAAAATCTCTGGACTAACGAGTTGTGTAAAATTGTCATTTGATTATATGAAGAGCATATAAATATGCTAGTCATATGGTCCAACCTTCTCCAATAATTTCTCCACGAAGCTTTCCTTTGTTACAAAATTTGAAGGTGGATGGATGGATCTGGCCTTAGGATTATTTTGTAAAATTATGGAAGGGAAGTATGAGGGGAAATTTTGTACGGATGATTAAAAAATAGAGCAAATGATTCAATTTTTTAAAAAATGTCGAATGATCATTTACTAACGTCAAATTCGCGTGAAATTATTAAAACATACTCACTATATTAGTGTCTTGCTCACTCTCTCTCTATCTCTTGCTCACTCTCTATATCTTTCGCTCTCTCGCTCTTTGTCCATCTTGCTCTTGCTCTCTAAATTGGAATCAGAATCCATATTTCAACTCCTCAGCTTTCAAAAACCCATCATCCCCAATCTTCTCCAGATTTCCCAAATCATTTAAAGTACGAAACCAAGCTTCAAAGCATAGAGTCGGGATTCAGCAACTAGTTGCGCATCATTGATCGGAGCTGCATTGTAGAACAAAATCCCACTGGAGGAGAATGAAATCGTCTCAGAGGGAGGAGAAGAAAATCGTGTGAAGGAAGGAGGAAAAAAGCAAGGGC

mRNA sequence

GGCCAATGGGTTTTCTATATATTGAGGGCAAAATGTAATGCCATTAGCAATTCAAACGCGCTTGATTTCGAAGAGAGGGAAAACGAAGAAGAAGATGAACCATAGCCAACAAGCTACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTTGCTGTTGCGACGCAGAAGTTCGTTGCGGATGTTGCAAGTGATGCCCTCCAGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGATAAAAGAGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCAAAGGCACTTCGTGAGTATGGCGTGAATGTGAAACATCAGGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATAATGGTTATAATATCTCATTGTTGTCTGTGTTCGTGAATATACTGAATTACTGATGCATATAGTTCAGGGTTGGAGTATTTCTTGCAGACTAATTTTCTCTGCCGTGCACAGTCATGAGTCATGTTGTACATTATAGCATTGCTTTGAATAACAAATTAAGTAGCCGTGTTTTCCTAGTCGGATTCGGTTACTACTTCTATAGCGAGGCCTTAGCCTTTTGGAACTATCATAGCGGCAGATATATTCAACATTTTCTACTTGTCTATTGAATGAAACTGTGCATAATGAAAAACCAAAACGTCATTCTTGTTCATACAAGGTTATGTAAAGATGGTTAAACCACATCCTGGCGCTATCAGAACGCATTCTCCATGGATTTTAAACGTCAATTTACTTTTAATTGTTTCAGCCTTGGGATTAAATAAGAAGGGGACTTTTGTAGGTGACATTTCTATTGATTCTGAATGGGATTTGCAGTTCACTTACCAAGTTTGTGCTTTATACAATACTTGGTCAGAGGGACAGAATAGTTCTTTCAAGACTTTTCATCTCCAATTTTGAACAATTCAATAGTTGCCAGCTTGATGAAATGATCCCATGCAGAGATTTCGAAGCCCTTCTGATCTCATGCAAAATCTCTGGACTAACGAGTTGTGTAAAATTGTCATTTGATTATATGAAGAGCATATAAATATGCTAGTCATATGGTCCAACCTTCTCCAATAATTTCTCCACGAAGCTTTCCTTTGTTACAAAATTTGAAGGTGGATGGATGGATCTGGCCTTAGGATTATTTTGTAAAATTATGGAAGGGAAGTATGAGGGGAAATTTTGTACGGATGATTAAAAAATAGAGCAAATGATTCAATTTTTTAAAAAATGTCGAATGATCATTTACTAACGTCAAATTCGCGTGAAATTATTAAAACATACTCACTATATTAGTGTCTTGCTCACTCTCTCTCTATCTCTTGCTCACTCTCTATATCTTTCGCTCTCTCGCTCTTTGTCCATCTTGCTCTTGCTCTCTAAATTGGAATCAGAATCCATATTTCAACTCCTCAGCTTTCAAAAACCCATCATCCCCAATCTTCTCCAGATTTCCCAAATCATTTAAAGTACGAAACCAAGCTTCAAAGCATAGAGTCGGGATTCAGCAACTAGTTGCGCATCATTGATCGGAGCTGCATTGTAGAACAAAATCCCACTGGAGGAGAATGAAATCGTCTCAGAGGGAGGAGAAGAAAATCGTGTGAAGGAAGGAGGAAAAAAGCAAGGGC

Coding sequence (CDS)

ATGCCATTAGCAATTCAAACGCGCTTGATTTCGAAGAGAGGGAAAACGAAGAAGAAGATGAACCATAGCCAACAAGCTACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTTGCTGTTGCGACGCAGAAGTTCGTTGCGGATGTTGCAAGTGATGCCCTCCAGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGATAAAAGAGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCAAAGGCACTTCGTGAGTATGGCGTGAATGTGAAACATCAGGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGA

Protein sequence

MPLAIQTRLISKRGKTKKKMNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE

Homology

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BLAST of Bhi04G000068 vs. Swiss-Prot
Match: sp|O04173|TAF10_ARATH (Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.0e-58
Identity = 114/136 (83.82%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTMEDLSKALREYGVNVKH EY
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALREYGVNVKHPEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTG+D  +R+E
Sbjct: 121 FADSPSTGMDPATRDE 134

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BLAST of Bhi04G000068 vs. Swiss-Prot
Match: sp|Q12962|TAF10_HUMAN (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.8e-23
Identity = 52/104 (50.00%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 37  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 96
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 97  ARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 141
            +  A    +   + KD++  LTMEDL+ AL EYG+NVK   YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

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BLAST of Bhi04G000068 vs. Swiss-Prot
Match: sp|Q8K0H5|TAF10_MOUSE (Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf10 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.8e-23
Identity = 52/104 (50.00%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 37  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 96
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 97  ARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 141
            +  A    +   + KD++  LTMEDL+ AL EYG+NVK   YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

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BLAST of Bhi04G000068 vs. Swiss-Prot
Match: sp|Q9XZT7|TAFAB_DROME (Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=7227 GN=Taf10b PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.0e-20
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 37  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 96
           LS+F++ L +YTP IPD +  HYL   GFQ  D R++RL+++A QK+++D+  DALQH K
Sbjct: 41  LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHSK 100

Query: 97  AR-QAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 140
           AR            + KD++  LTMEDL  AL +YG+NV+  +Y
Sbjct: 101 ARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGINVRKVDY 144

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BLAST of Bhi04G000068 vs. Swiss-Prot
Match: sp|Q9U5W9|TAF10_DROME (Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster OX=7227 GN=Taf10 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-18
Identity = 45/114 (39.47%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 33  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDAL 92
           +++ + E +  L +Y+PTIPD L  H L  +GF   D +++RLV+V+ QKF++D+A+DAL
Sbjct: 53  EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDAL 112

Query: 93  QHCKARQAAV------VKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 141
           QHCK R   +         K  K  KD++  L MEDL  AL ++G+ ++  +YF
Sbjct: 113 QHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLVPALADHGITMRKPQYF 166

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BLAST of Bhi04G000068 vs. TAIR10
Match: AT4G31720.2 (TBP-associated factor II 15)

HSP 1 Score: 224.9 bits (572), Expect = 3.3e-59
Identity = 114/136 (83.82%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTMEDLSKALREYGVNVKH EY
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALREYGVNVKHPEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTG+D  +R+E
Sbjct: 121 FADSPSTGMDPATRDE 134

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BLAST of Bhi04G000068 vs. TrEMBL
Match: tr|A0A1S3BD75|A0A1S3BD75_CUCME (Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC103488368 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.7e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of Bhi04G000068 vs. TrEMBL
Match: tr|A0A0A0LPV6|A0A0A0LPV6_CUCSA (Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=Csa_2G383360 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 2.4e-67
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of Bhi04G000068 vs. TrEMBL
Match: tr|A0A1U8P058|A0A1U8P058_GOSHI (Transcription initiation factor TFIID subunit 10 OS=Gossypium hirsutum OX=3635 GN=LOC107953719 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.1e-59
Identity = 117/141 (82.98%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 15  KTKKKMNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIR 74
           + K++MNH+ Q++  +HDDD+ LS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIR
Sbjct: 46  RRKERMNHNPQSSDGKHDDDSGLSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIR 105

Query: 75  LVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNV 134
           LVAVATQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTM+DLSK+LREYGVNV
Sbjct: 106 LVAVATQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNV 165

Query: 135 KHQEYFADSPSTGVDSTSREE 156
           KHQEYFADSPSTG+D  SREE
Sbjct: 166 KHQEYFADSPSTGIDPASREE 186

[Close]

BLAST of Bhi04G000068 vs. TrEMBL
Match: tr|A0A2P5RK48|A0A2P5RK48_GOSBA (Transcription initiation factor TFIID subunit 10 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31699 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.4e-59
Identity = 117/136 (86.03%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH+ Q++  +HDDD+ALS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSSDGKHDDDSALSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTM+DLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGIDPASREE 136

[Close]

BLAST of Bhi04G000068 vs. TrEMBL
Match: tr|A0A0B0NWY6|A0A0B0NWY6_GOSAR (Transcription initiation factor TFIID subunit 10 OS=Gossypium arboreum OX=29729 GN=F383_22599 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.4e-59
Identity = 117/136 (86.03%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH+ Q++  +HDDD+ALS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSSDGKHDDDSALSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTM+DLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGIDPASREE 136

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BLAST of Bhi04G000068 vs. NCBI nr
Match: XP_008445293.1 (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo])

HSP 1 Score: 266.2 bits (679), Expect = 7.2e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of Bhi04G000068 vs. NCBI nr
Match: XP_022962589.1 (transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997339.1 transcription initiation factor TFIID subunit 10 [Cucurbita maxima] >XP_023547186.1 transcription initiation factor TFIID subunit 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.0 bits (676), Expect = 1.6e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of Bhi04G000068 vs. NCBI nr
Match: XP_004138687.1 (PREDICTED: transcription initiation factor TFIID subunit 10 [Cucumis sativus] >KGN63014.1 hypothetical protein Csa_2G383360 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 3.6e-67
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of Bhi04G000068 vs. NCBI nr
Match: XP_022132183.1 (transcription initiation factor TFIID subunit 10 [Momordica charantia])

HSP 1 Score: 256.5 bits (654), Expect = 5.7e-65
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVD TSREE
Sbjct: 121 FADSPSTGVDPTSREE 136

[Close]

BLAST of Bhi04G000068 vs. NCBI nr
Match: XP_015884224.1 (transcription initiation factor TFIID subunit 10 [Ziziphus jujuba])

HSP 1 Score: 239.6 bits (610), Expect = 7.2e-60
Identity = 120/136 (88.24%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH+QQ+T +RHDDD ALSEFLASLM+YTPTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQSTEARHDDDPALSEFLASLMDYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVA+VA DALQ CKARQA++VKDKRDKQQKDKRLILTMEDLSKALRE+GVNVKHQEY
Sbjct: 61  TQKFVAEVAGDALQQCKARQASIVKDKRDKQQKDKRLILTMEDLSKALREHGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGMDPASREE 136

The following BLAST results are available for this feature:

BLAST of Bhi04G000068 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04173\|TAF10_ARATH	6.0e-58	83.82	Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q12962\|TAF10_HUMAN	4.8e-23	50.00	Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF1...	[more]
sp\|Q8K0H5\|TAF10_MOUSE	4.8e-23	50.00	Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf...	[more]
sp\|Q9XZT7\|TAFAB_DROME	5.0e-20	45.19	Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=...	[more]
sp\|Q9U5W9\|TAF10_DROME	3.6e-18	39.47	Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster OX=7...	[more]

BLAST of Bhi04G000068 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31720.2	3.3e-59	83.82	TBP-associated factor II 15	[more]

BLAST of Bhi04G000068 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BD75\|A0A1S3BD75_CUCME	4.7e-68	100.00	Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A0A0LPV6\|A0A0A0LPV6_CUCSA	2.4e-67	98.53	Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=C...	[more]
tr\|A0A1U8P058\|A0A1U8P058_GOSHI	1.1e-59	82.98	Transcription initiation factor TFIID subunit 10 OS=Gossypium hirsutum OX=3635 G...	[more]
tr\|A0A2P5RK48\|A0A2P5RK48_GOSBA	2.4e-59	86.03	Transcription initiation factor TFIID subunit 10 OS=Gossypium barbadense OX=3634...	[more]
tr\|A0A0B0NWY6\|A0A0B0NWY6_GOSAR	2.4e-59	86.03	Transcription initiation factor TFIID subunit 10 OS=Gossypium arboreum OX=29729 ...	[more]

BLAST of Bhi04G000068 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445293.1	7.2e-68	100.00	PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis ...	[more]
XP_022962589.1	1.6e-67	99.26	transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997...	[more]
XP_004138687.1	3.6e-67	98.53	PREDICTED: transcription initiation factor TFIID subunit 10 [Cucumis sativus] >K...	[more]
XP_022132183.1	5.7e-65	95.59	transcription initiation factor TFIID subunit 10 [Momordica charantia]	[more]
XP_015884224.1	7.2e-60	88.24	transcription initiation factor TFIID subunit 10 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006352	DNA-templated transcription, initiation

Vocabulary: **INTERPRO**
Term	Definition
IPR003923	TFIID_30kDa

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006413	translational initiation
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006366	transcription from RNA polymerase II promoter
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000068	Bhi04M000068	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PRINTS	PR01443	TFIID30KDSUB	coord: 69..91 score: 64.35 coord: 49..65 score: 60.0 coord: 115..137 score: 56.52
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PFAM	PF03540	TFIID_30kDa	coord: 49..98 e-value: 1.8E-24 score: 85.3
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PIRSF	PIRSF017246	TFIID_TAF10	coord: 5..141 e-value: 6.7E-55 score: 184.2
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PANTHER	PTHR21242	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10	coord: 16..140
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	CDD	cd07982	TAF10	coord: 35..140 e-value: 9.47209E-56 score: 172.025
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..33

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi04G000068	Csa2G383360	Cucumber (Chinese Long) v2	cuwgoB156
Bhi04G000068	MELO3C011321	Melon (DHL92) v3.5.1	mewgoB343
Bhi04G000068	ClCG08G013890	Watermelon (Charleston Gray)	wcgwgoB613
Bhi04G000068	CSPI02G24120	Wild cucumber (PI 183967)	cpiwgoB154
Bhi04G000068	Cucsa.163030	Cucumber (Gy14) v1	cgywgoB313
Bhi04G000068	CmoCh05G003370	Cucurbita moschata (Rifu)	cmowgoB0945
Bhi04G000068	Lsi08G012690	Bottle gourd (USVL1VR-Ls)	lsiwgoB592
Bhi04G000068	Cp4.1LG11g02860	Cucurbita pepo (Zucchini)	cpewgoB0142
Bhi04G000068	MELO3C011321.2	Melon (DHL92) v3.6.1	medwgoB342
Bhi04G000068	Cla022381	Watermelon (97103) v1	wgowmB298
Bhi04G000068	Cla97C08G157370	Watermelon (97103) v2	wgowmbB314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G000068	Cucumber (Gy14) v2	cgybwgoB151
Bhi04G000068	Cucurbita maxima (Rimu)	cmawgoB0195
Bhi04G000068	Cucurbita maxima (Rimu)	cmawgoB0945
Bhi04G000068	Cucurbita moschata (Rifu)	cmowgoB0191
Bhi04G000068	Cucurbita pepo (Zucchini)	cpewgoB1029
Bhi04G000068	Cucumber (Chinese Long) v3	cucwgoB163
Bhi04G000068	Cucumber (Chinese Long) v3	cucwgoB392
Bhi04G000068	Silver-seed gourd	carwgoB0173
Bhi04G000068	Silver-seed gourd	carwgoB1142