CmoCh05G003370 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G003370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription initiation factor TFIID subunit 10
Location	Cmo_Chr05 : 1503643 .. 1506591 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGCTTCTCAAATCGAGGAGTAATTCGAACGAGCTTCGTTCGAAGAGAGGGAAGACGAAGAAGATGAACCATAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTGTAAGATCTCATTTGGATGCTGCTTAACTCCGAGTTGATTCTTTCCTTCCATGCGTTTTTCTATAAGTTCAAATCACGTCGGTGTTTTCTTTTCGGCTATCATTCACAGATTCCCGACGAGTTGGTGGAACATTACTTAGGAAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGTAGGTACCTTTTCGTTTGTTTTTATTATTTTCGTTCATCAAAACCCTAGGTTTAAAACGCGGTTTTTCGATCGACAGATGAGATGGATTTATCTTTTTTTCCTAATTTTATGATTGGTATTGCTTTATTTTCACAATTTAATCGTACTTGGGAATTTTCTATTCGGTTGGTTGGTTGTTGACTGCTAATATCGATCAAAGTGATGCTTAATCCTGCCGGGGGTTGCAATTAGGGGATTTCTTATTTCGAGTATTTTTCTTTTTTAAAGAGACAATGTTGGTTATTGTTGCTGATTTTTTGTTGTTGGGAAGTTGCCTCTACATTACTTAATCTCTATGAATGAACCGAGTATGAGATTGGAGGACAGTTCCCACCTCATTCCCAATGAAGAAATGGGAATTCTTCGCCCTGGGGTAAATTCTTGATTATTCTTTGTAGGTCGGGCGTGACATGTGCTTACCTGGTTTGTTCTGTAGTAGTGTTATTGAACATGAAGACGGCCTTTTTAGTGTTTATAGTGGTATTCTGGGTAGCGGTCATTGCTTCGGACTTTTGATTTCAATGAATGGTGTTATTAGTGGCTGCATTTCTATGCTGAGAATTGTGCACTGGGGAAGTTCATCTAGTTCTTGAACTTTTTCCTGTTCTATTCCAACTATTCTTCTACTCTTGTTTTCCATTTCATTTCGTAGTTTGTTTTAATCTTCTAAAGTTGGGCGTTTAAAATTTTTCAAAATGGAGAGGATATAAGTCATTTAAGATCTTTGATTATTATGAGATGGATTCTTTAACCTTGGCCTGGTTAAGTGCTTTCTAGGTAAAGAGATTCTCAGTTTTGATTGGCGTTAGTTGCGTTCACCATCGCAAGAAATATTTGTAATTAGAAATTGGCTTTTTATTTGTTGCGTTCACTTTTGCAGGATCAGGCTTGTTGCTGTTGCTACGCAGAAGTTCGTTGCAGATGTTGCAAGTGATGCTCTCCAGTATGCTTGCTTTCTTCTTTCTTATTTTGCATGAGGGGTGCAAGTAAAATATGATCATAACTTGAGTTGCAGACCTTATGATAAAAAAAAAATTAAAAAAAAACTTGAGTTGCAAACTTTACATTTAATTACATTTAACGATTTACTCCAAGTAATCCTCTACAGCTGACATCATCACCTATTAATTTTTCTTCTTCAACCCCCATGACTGCGTTATTATTGTTTGGAAGGCGTTTAATGACTACCATCTCTTTCCCATGCCCTTTTATGTACCTGGGGAGATTTTCTTTGTGGGTTTTCAAATGCTTTTGTAACAGTTGGGGTATTTAGCTGCTTGGGTTGGTAAGAGTTTTTCTAGGTTCATCAACGTCTCTTTGTAGGTTGCGGCAACAGTCTTTTTTGTAATTATCTATAAGGTCTTATTTTACTTAATTGGTTTCTTTAATTTTTCTCCTATTTCATGGGCTCCTTTTTTGTGTACTCTCTTTGAGAAAGTTTAGTTTCCCAATAATAATAATAATAATAATAATAATAAAACTTATTTGGCTGTGCAATGTAGGCATTGTAAGGCGAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGTGCATTTTTTGTAACACAGGGTCTCTTGATTGATAAATTATTTGGCCAGTCTAACATTTTGCTGGTCCAGGATAAGCGCTTAATATTGACCATGGATGATCTCTCGAAGGCTCTTCGTGAGGTAAGCTCAAAATGTTATTTATTTCTCATTCCTTTTTCAATTATTAAGCTCTTGTGCTTGATGGTTATTTCATATATAGGCTTAAGAGATCATTAGTTTGATTCTGGTATGCATTCTTCTTTTTAAAAGGTGCTATAGGTGGGTTCTTTTTAACATATGCTCGATTTTTATTTGTGTAATTAACTCCTGGCAGGCTGTAATCTTGTGAAGAATTTGTGATTTTTTTTTAGTTCTTCAAATTGCATGGTGCATCCTCAACATTATGCAGTTTACACTTGGTGGGGAGTCTTAAAAATGTGCATTTGTAATTGATACCCTTTGATCATAGACATTGGAAGATCTAGTAGTTTCTTATCCAAACTAACCGTCTTGTTGGTACTTGATGAACAGTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACCGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATAACGGTTAAAATGTCTCATCGTTGTGTTCGTGAATATACTGATGCATCATAGTTCAGGTTGGAGTACTCTTGCTGCCTGCCATGCCCAATTATTAGTCATGTTAGTATTGCTATCATTAAGTAGCCGTCTGTGAACTGTCATTGCAGTAGACATGTTAAGCGTTTTCTACATGTCTACTAAATGAAACTGTGCATAACGAAACCCAAAACATCATTCTTGTTCATACAAGGTTATGTTATCATGATGCATTCTCCATGGATTTGCAGCTTGTAAGAACTCTAGTCGATCTTATTTTAACTCTTAGAAGTGAGGATAAGTAACGCGACCATGTCTCGGAGATCTGAATTTTATTATTATGTGTGCAAATCTTTGAGTGGGGTTTGAACGGATCTTCCCAATATGAACGACAAAGTGG

mRNA sequence

AAAGCTTCTCAAATCGAGGAGTAATTCGAACGAGCTTCGTTCGAAGAGAGGGAAGACGAAGAAGATGAACCATAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGTGGAACATTACTTAGGAAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTTGCTGTTGCTACGCAGAAGTTCGTTGCAGATGTTGCAAGTGATGCTCTCCAGCATTGTAAGGCGAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGATGATCTCTCGAAGGCTCTTCGTGAGTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACCGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATAACGGTTAAAATGTCTCATCGTTGTGTTCGTGAATATACTGATGCATCATAGTTCAGGTTGGAGTACTCTTGCTGCCTGCCATGCCCAATTATTAGTCATGTTAGTATTGCTATCATTAAGTAGCCGTCTGTGAACTGTCATTGCAGTAGACATGTTAAGCGTTTTCTACATGTCTACTAAATGAAACTGTGCATAACGAAACCCAAAACATCATTCTTGTTCATACAAGGTTATGTTATCATGATGCATTCTCCATGGATTTGCAGCTTGTAAGAACTCTAGTCGATCTTATTTTAACTCTTAGAAGTGAGGATAAGTAACGCGACCATGTCTCGGAGATCTGAATTTTATTATTATGTGTGCAAATCTTTGAGTGGGGTTTGAACGGATCTTCCCAATATGAACGACAAAGTGG

Coding sequence (CDS)

ATGAACCATAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGTGGAACATTACTTAGGAAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTTGCTGTTGCTACGCAGAAGTTCGTTGCAGATGTTGCAAGTGATGCTCTCCAGCATTGTAAGGCGAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGATGATCTCTCGAAGGCTCTTCGTGAGTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACCGGAGTGGATTCTACTTCCAGAGAGGAATGA

Homology

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BLAST of CmoCh05G003370 vs. Swiss-Prot
Match: TAF10_ARATH (Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana GN=TAF10 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.8e-58
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 1


Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTM+DLSKALREYGVNVKH EY
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALREYGVNVKHPEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  +R+E
Sbjct: 121 FADSPSTGMDPATRDE 134

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BLAST of CmoCh05G003370 vs. Swiss-Prot
Match: TAF10_HUMAN (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens GN=TAF10 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.1e-23
Identity = 51/104 (49.04%), Postives = 74/104 (71.15%), Query Frame = 1


Query: 18  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 77
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 78  ARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 122
            +  A    +   + KD++  LTM+DL+ AL EYG+NVK   YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

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BLAST of CmoCh05G003370 vs. Swiss-Prot
Match: TAF10_MOUSE (Transcription initiation factor TFIID subunit 10 OS=Mus musculus GN=Taf10 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.1e-23
Identity = 51/104 (49.04%), Postives = 74/104 (71.15%), Query Frame = 1


Query: 18  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 77
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 78  ARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 122
            +  A    +   + KD++  LTM+DL+ AL EYG+NVK   YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

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BLAST of CmoCh05G003370 vs. Swiss-Prot
Match: TAFAB_DROME (Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster GN=Taf10b PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-20
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 1


Query: 2   NHSQQATGSRHDD------DAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIR 61
           +H Q + G    D       + LS+F++ L +YTP IPD +  HYL   GFQ  D R++R
Sbjct: 19  SHGQSSGGGGGGDRDRTTPSSHLSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVR 78

Query: 62  LVAVATQKFVADVASDALQHCKAR-QAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVN 121
           L+++A QK+++D+  DALQH KAR            + KD++  LTM+DL  AL +YG+N
Sbjct: 79  LISLAAQKYMSDIIDDALQHSKARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGIN 138

[Close]

BLAST of CmoCh05G003370 vs. Swiss-Prot
Match: TAF10_DROME (Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster GN=Taf10 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 6.8e-18
Identity = 44/114 (38.60%), Postives = 71/114 (62.28%), Query Frame = 1


Query: 14  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDAL 73
           +++ + E +  L +Y+PTIPD L  H L  +GF   D +++RLV+V+ QKF++D+A+DAL
Sbjct: 53  EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDAL 112

Query: 74  QHCKARQAAV------VKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 122
           QHCK R   +         K  K  KD++  L M+DL  AL ++G+ ++  +YF
Sbjct: 113 QHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLVPALADHGITMRKPQYF 166

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BLAST of CmoCh05G003370 vs. TrEMBL
Match: A0A0A0LPV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383360 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-68
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

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BLAST of CmoCh05G003370 vs. TrEMBL
Match: A0A0B0NWY6_GOSAR (Transcription initiation factor TFIID subunit 10 OS=Gossypium arboreum GN=F383_22599 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.3e-60
Identity = 118/136 (86.76%), Postives = 129/136 (94.85%), Query Frame = 1


Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+ Q++  +HDDD+ALS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSSDGKHDDDSALSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTMDDLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGIDPASREE 136

[Close]

BLAST of CmoCh05G003370 vs. TrEMBL
Match: A0A0D2N586_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G039800 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.3e-60
Identity = 118/136 (86.76%), Postives = 129/136 (94.85%), Query Frame = 1


Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+ Q++  +HDDD+ALS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSSDGKHDDDSALSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTMDDLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGIDPASREE 136

[Close]

BLAST of CmoCh05G003370 vs. TrEMBL
Match: A0A059D835_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03202 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-59
Identity = 116/135 (85.93%), Postives = 128/135 (94.81%), Query Frame = 1


Query: 2   NHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVAT 61
           + SQQ++ SRHDDDAAL++FLASLMEYTPT+PDELVEHYLGKSGFQCPDVRL RLVAVAT
Sbjct: 55  SQSQQSSESRHDDDAALTDFLASLMEYTPTVPDELVEHYLGKSGFQCPDVRLTRLVAVAT 114

Query: 62  QKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 121
           QKFVAD+ASDALQHC+ARQ  VVKDKRDKQQKDKRLIL+MDDLSKALREYGVNVKHQEYF
Sbjct: 115 QKFVADIASDALQHCRARQTTVVKDKRDKQQKDKRLILSMDDLSKALREYGVNVKHQEYF 174

Query: 122 ADSPSTGVDSTSREE 137
           ADSPS G+D+ SR+E
Sbjct: 175 ADSPSAGLDTASRDE 189

[Close]

BLAST of CmoCh05G003370 vs. TrEMBL
Match: A0A061GJD8_THECC (TATA box-binding protein associated factor 10 OS=Theobroma cacao GN=TCM_036855 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.3e-59
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 1


Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+ Q+   +HDDD ALS+FLASLMEYTPTIPDELVEHYL KSG QCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSGDGKHDDDTALSDFLASLMEYTPTIPDELVEHYLAKSGVQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVA+VASDALQHCKARQA+V+KDKRDKQQKDKRLILTM+DLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQASVIKDKRDKQQKDKRLILTMEDLSKSLREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  SR+E
Sbjct: 121 FADSPSTGIDPASRDE 136

[Close]

BLAST of CmoCh05G003370 vs. TAIR10
Match: AT4G31720.2 (AT4G31720.2 TBP-associated factor II 15)

HSP 1 Score: 224.2 bits (570), Expect = 5.0e-59
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 1


Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTM+DLSKALREYGVNVKH EY
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALREYGVNVKHPEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  +R+E
Sbjct: 121 FADSPSTGMDPATRDE 134

[Close]

BLAST of CmoCh05G003370 vs. NCBI nr
Match: gi|449441834|ref|XP_004138687.1| (PREDICTED: transcription initiation factor TFIID subunit 10 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.2e-68
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of CmoCh05G003370 vs. NCBI nr
Match: gi|659089035|ref|XP_008445293.1| (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo])

HSP 1 Score: 265.8 bits (678), Expect = 4.2e-68
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of CmoCh05G003370 vs. NCBI nr
Match: gi|823121134|ref|XP_012455031.1| (PREDICTED: transcription initiation factor TFIID subunit 10-like [Gossypium raimondii])

HSP 1 Score: 239.6 bits (610), Expect = 3.2e-60
Identity = 118/136 (86.76%), Postives = 129/136 (94.85%), Query Frame = 1


Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+ Q++  +HDDD+ALS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSSDGKHDDDSALSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTMDDLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGIDPASREE 136

[Close]

BLAST of CmoCh05G003370 vs. NCBI nr
Match: gi|1009134026|ref|XP_015884224.1| (PREDICTED: transcription initiation factor TFIID subunit 10 [Ziziphus jujuba])

HSP 1 Score: 239.2 bits (609), Expect = 4.2e-60
Identity = 119/136 (87.50%), Postives = 129/136 (94.85%), Query Frame = 1


Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+QQ+T +RHDDD ALSEFLASLM+YTPTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQSTEARHDDDPALSEFLASLMDYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVA+VA DALQ CKARQA++VKDKRDKQQKDKRLILTM+DLSKALRE+GVNVKHQEY
Sbjct: 61  TQKFVAEVAGDALQQCKARQASIVKDKRDKQQKDKRLILTMEDLSKALREHGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGMDPASREE 136

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BLAST of CmoCh05G003370 vs. NCBI nr
Match: gi|629122076|gb|KCW86566.1| (hypothetical protein EUGRSUZ_B03202 [Eucalyptus grandis])

HSP 1 Score: 236.1 bits (601), Expect = 3.6e-59
Identity = 116/135 (85.93%), Postives = 128/135 (94.81%), Query Frame = 1


Query: 2   NHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVAT 61
           + SQQ++ SRHDDDAAL++FLASLMEYTPT+PDELVEHYLGKSGFQCPDVRL RLVAVAT
Sbjct: 55  SQSQQSSESRHDDDAALTDFLASLMEYTPTVPDELVEHYLGKSGFQCPDVRLTRLVAVAT 114

Query: 62  QKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 121
           QKFVAD+ASDALQHC+ARQ  VVKDKRDKQQKDKRLIL+MDDLSKALREYGVNVKHQEYF
Sbjct: 115 QKFVADIASDALQHCRARQTTVVKDKRDKQQKDKRLILSMDDLSKALREYGVNVKHQEYF 174

Query: 122 ADSPSTGVDSTSREE 137
           ADSPS G+D+ SR+E
Sbjct: 175 ADSPSAGLDTASRDE 189

The following BLAST results are available for this feature:

BLAST of CmoCh05G003370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAF10_ARATH	8.8e-58	83.09	Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana GN=TAF1...	[more]
TAF10_HUMAN	7.1e-23	49.04	Transcription initiation factor TFIID subunit 10 OS=Homo sapiens GN=TAF10 PE=1 S...	[more]
TAF10_MOUSE	7.1e-23	49.04	Transcription initiation factor TFIID subunit 10 OS=Mus musculus GN=Taf10 PE=1 S...	[more]
TAFAB_DROME	9.5e-20	39.68	Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster GN=...	[more]
TAF10_DROME	6.8e-18	38.60	Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster GN=T...	[more]

BLAST of CmoCh05G003370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPV6_CUCSA	2.3e-68	99.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383360 PE=4 SV=1	[more]
A0A0B0NWY6_GOSAR	2.3e-60	86.76	Transcription initiation factor TFIID subunit 10 OS=Gossypium arboreum GN=F383_2...	[more]
A0A0D2N586_GOSRA	2.3e-60	86.76	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G039800 PE=4 SV=1	[more]
A0A059D835_EUCGR	2.5e-59	85.93	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03202 PE=4 SV=1	[more]
A0A061GJD8_THECC	3.3e-59	85.29	TATA box-binding protein associated factor 10 OS=Theobroma cacao GN=TCM_036855 P...	[more]

BLAST of CmoCh05G003370 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31720.2	5.0e-59	83.09	TBP-associated factor II 15	[more]

BLAST of CmoCh05G003370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441834\|ref\|XP_004138687.1\|	3.2e-68	99.26	PREDICTED: transcription initiation factor TFIID subunit 10 [Cucumis sativus]	[more]
gi\|659089035\|ref\|XP_008445293.1\|	4.2e-68	99.26	PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis ...	[more]
gi\|823121134\|ref\|XP_012455031.1\|	3.2e-60	86.76	PREDICTED: transcription initiation factor TFIID subunit 10-like [Gossypium raim...	[more]
gi\|1009134026\|ref\|XP_015884224.1\|	4.2e-60	87.50	PREDICTED: transcription initiation factor TFIID subunit 10 [Ziziphus jujuba]	[more]
gi\|629122076\|gb\|KCW86566.1\|	3.6e-59	85.93	hypothetical protein EUGRSUZ_B03202 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003923	TFIID_30kDa

Vocabulary: **Biological Process**
Term	Definition
GO:0006352	DNA-templated transcription, initiation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006366	transcription from RNA polymerase II promoter
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:1901006	ubiquinone-6 biosynthetic process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0050662	coenzyme binding
molecular_function	GO:0003954	NADH dehydrogenase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G003370.1	CmoCh05G003370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PRINTS	PR01443	TFIID30KDSUB	coord: 96..118 score: 9.6E-30coord: 50..72 score: 9.6E-30coord: 30..46 score: 9.6
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PIR	PIRSF017246	TFIID_TAF10	coord: 1..122 score: 1.1
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PANTHER	PTHR21242	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10	coord: 1..125 score: 2.0
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PFAM	PF03540	TFIID_30kDa	coord: 30..79 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G003370	Cucsa.163030	Cucumber (Gy14) v1	cgycmoB0463
CmoCh05G003370	CmaCh05G003360	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G003370	Cla022381	Watermelon (97103) v1	cmowmB748
CmoCh05G003370	Csa2G383360	Cucumber (Chinese Long) v2	cmocuB785
CmoCh05G003370	MELO3C011321	Melon (DHL92) v3.5.1	cmomeB716
CmoCh05G003370	ClCG08G013890	Watermelon (Charleston Gray)	cmowcgB716
CmoCh05G003370	CSPI02G24120	Wild cucumber (PI 183967)	cmocpiB788
CmoCh05G003370	Lsi08G012690	Bottle gourd (USVL1VR-Ls)	cmolsiB731
CmoCh05G003370	Cp4.1LG11g02860	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G003370	MELO3C011321.2	Melon (DHL92) v3.6.1	cmomedB813
CmoCh05G003370	Cla97C08G157370	Watermelon (97103) v2	cmowmbB802
CmoCh05G003370	Bhi04G000068	Wax gourd	cmowgoB0945
CmoCh05G003370	CsGy2G023900	Cucumber (Gy14) v2	cgybcmoB244
CmoCh05G003370	Carg09379	Silver-seed gourd	carcmoB0196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G003370	Silver-seed gourd	carcmoB1319
CmoCh05G003370	Cucumber (Chinese Long) v3	cmocucB0925
CmoCh05G003370	Cucurbita moschata (Rifu)	cmocmoB156
CmoCh05G003370	Cucurbita maxima (Rimu)	cmacmoB199
CmoCh05G003370	Cucurbita pepo (Zucchini)	cmocpeB750