Cp4.1LG11g02860 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g02860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription initiation factor TFIID subunit 10
LocationCp4.1LG11 : 1520961 .. 1523670 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGACTAATGGGTCTTCTATATAAAGGGAAAATTCTAATTCTATAAGCTTCTCAAATCAAGGAGTAATTCGAACGAGCTTCGTTCGAAGAGAGGGAAGACGAAGAAGATGAACCATAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTGTAAGATCTCATTTGGATGCTGCTGAACTCCGAGTTGATTCTTTCCTTCCATGCGTTTTTCTATAAGTTCAAATCATGTCGGTGTTTTCTTTTCGGCTATCATTTCACAGATTCCCGACGAGTTGGTGGAACATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGTAGGTACCTTTTCGTTTGTTTTTATTATTTTCGTTCATCAAAACCCTAGGTTTAAAACGCGGTTTTTCGATCGACACATGAGATGGATTTATCTTTTTTCCTAATTTTATGATTGGTATTTCTTTATTTTCACAATTTAATCGTACTTGGGGAATTTTTTATTCAGTTGGTTGGTTGTTGACTGCTAATATCGATCAAAGTGATGCTTAATCCTGCCGGGGGTTGCAATTAGGGGATTTCTTATTTCGAGTATTTTTTTTTTTTTTAAAGAGACAATGTTGGTTATTGTTGCTGATTTTTTGTTGTTGGGAAGTTGCCTCTACATTACTTAATCTCTATGAATGAACCGAGTATGAGATTGGAGGACAGTTCCCACCTCATTCCCAATGAAGAAATGGGAATTCTTCGCCCTGGGGTAAATTCTTGATTATTCTTTGTAGGTCGGGCGTGACATGTGCTTACCTGGTTTGTTCTGTAGTAGTGTTATTGAACATGAAGGCGGCCTTTTTAGTGTTTATAGTGGTATTCTGGGTAGCGGTCATTGCTTCGGACTTTTGATTTCAATGAGTGGTGTTATTAGTGGCTGCATTTCTATGCTGAGAATTGTGCACTGGGGAAGTTCATCTAGTTCTTAAACTTTTGCCTGTTCTATTCCAACTATTCTTCTACTCTTGTTTTCCATTTCATTTCGTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGTTAGGCGTTTAAATTTTTTCAAAATGGAGAGGATATAAGTCATTTAAGATCTTTGATTATTATGAGATGGATTCTTTAACCTTGGCCTGGTTAAGTGCTTTCTAGGTAAAGTGATTCTCAGTTTTGATTGGCGTTAGTTGTGTTCACCATTGCAAGAATTATTTGTAATTAGAAATTGGCTTGTTGCGTTCACTTTCGCAGGATCAGGCTTGTCGCTGTTGCTACGCAGAAGTTCGTTGCAGATGTTGCAAGTGATGCTCTCCAGTATGCTTGCTTTCTTCTTTCTTATTTTGCATGAGGGGTGCAAGTAAAATATGATCATAACTTGAGTTGCAGACTTTACATTTAATTACATTTAACGATTTACTCTAAGTAATTCTCTACAGCTGACCTCAGCACCTATTAATTTTTCTACTTCAACCCCCATGCCTGCGTTATTATTGTTTGGAAGGCGTTAAATGACTACCATCTCTTTCCCATGCCCTTTTATGTACCTGGGGAGATTTTCTCTGTGGGTTTTCAAATGCTTTAGTTTCTCAATAATAATAATAATAATAACTTATTTGGCTGTGCAATGTAGGCATTGTAAGGCGAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGTGCATTTTTTGTAACTCAGGGTCTCTTGATTGATAAATTATTTGGCCAGTCTAACATTTTGCTGGTCCAGGATAAGCGCTTAATATTGACCATGGATGATCTCTCGAAGGCTCTTCGTGAGGTAAGCTCGAAATGTTATTTATTTCTCATTCCTTTTTCAATTATTAAGCTCTTGTGCTTGATGGATATTTCATATATAGACATAAGAGATCATTAGTTTGATTCTGGTATGCATTCTTCTTTTTAAAAGGTGCTATAGGTGGGTTCTTTTGAACATCTGCTCGATTTTTATTTGTGTAATTGACTCCTGGCAGGCTGTAATATTGTGAAGAATTTGTGATTTTTTTTAGTTCTTCAAATTGCATGGTGCATCCTCAACATCATGCAGTTTACACTTGGTGGGGAGTCTTAAAATGTGCATTTGTAATTGATACCCTTTGATCATAGACATTGGAAGATCTAGTTTCTTATCCAAACTAACCGTCTTGTTGGTACGTGATGAACAGTATGGCGTGAACGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACCGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATGGAATAATGGTTAAAATGTCTCATCGTTGTGTTCGTGAATATACCGATGCATCATAGTTCAGGTTGGAGTACTCTTGCTGCCTGCCATGCACAATTATTAGTCATGTTAGTATTGCTATCATTAAGTAGCCCGTCTGTGAACTGTCATAGCAGTAGATATGTTAAGCGTTTTCTACATGTCTACTAAATGAAACTGTGCATAATGAAACCCAAAACATCATTCTTGTTCATACAAGGTTATGTTATCATGATGCATTCTCCATGGATTTGCAACTTCAGATTAATTGTCCATCTCTTTATGTTTGTGTTTATGAGTTCGGTAGGGACGAGTTCATTTTTAAAT

mRNA sequence

TAGACTAATGGGTCTTCTATATAAAGGGAAAATTCTAATTCTATAAGCTTCTCAAATCAAGGAGTAATTCGAACGAGCTTCGTTCGAAGAGAGGGAAGACGAAGAAGATGAACCATAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGTGGAACATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTCGCTGTTGCTACGCAGAAGTTCGTTGCAGATGTTGCAAGTGATGCTCTCCAGCATTGTAAGGCGAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGATGATCTCTCGAAGGCTCTTCGTGAGTATGGCGTGAACGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACCGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATGGAATAATGGTTAAAATGTCTCATCGTTGTGTTCGTGAATATACCGATGCATCATAGTTCAGGTTGGAGTACTCTTGCTGCCTGCCATGCACAATTATTAGTCATGTTAGTATTGCTATCATTAAGTAGCCCGTCTGTGAACTGTCATAGCAGTAGATATGTTAAGCGTTTTCTACATGTCTACTAAATGAAACTGTGCATAATGAAACCCAAAACATCATTCTTGTTCATACAAGGTTATGTTATCATGATGCATTCTCCATGGATTTGCAACTTCAGATTAATTGTCCATCTCTTTATGTTTGTGTTTATGAGTTCGGTAGGGACGAGTTCATTTTTAAAT

Coding sequence (CDS)

ATGAACCATAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGTGGAACATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTCGCTGTTGCTACGCAGAAGTTCGTTGCAGATGTTGCAAGTGATGCTCTCCAGCATTGTAAGGCGAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGATGATCTCTCGAAGGCTCTTCGTGAGTATGGCGTGAACGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACCGGAGTGGATTCTACTTCCAGAGAGGAATGA

Protein sequence

MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Homology
[Close]
BLAST of Cp4.1LG11g02860 vs. Swiss-Prot
Match: TAF10_ARATH (Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana GN=TAF10 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.8e-58
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 1 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTM+DLSKALREYGVNVKH EY
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALREYGVNVKHPEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  +R+E
Sbjct: 121 FADSPSTGMDPATRDE 134

[Close]
BLAST of Cp4.1LG11g02860 vs. Swiss-Prot
Match: TAF10_HUMAN (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens GN=TAF10 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.1e-23
Identity = 51/104 (49.04%), Postives = 74/104 (71.15%), Query Frame = 1 

Query: 18  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 77
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 78  ARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 122
            +  A    +   + KD++  LTM+DL+ AL EYG+NVK   YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

[Close]
BLAST of Cp4.1LG11g02860 vs. Swiss-Prot
Match: TAF10_MOUSE (Transcription initiation factor TFIID subunit 10 OS=Mus musculus GN=Taf10 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.1e-23
Identity = 51/104 (49.04%), Postives = 74/104 (71.15%), Query Frame = 1 

Query: 18  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 77
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 78  ARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 122
            +  A    +   + KD++  LTM+DL+ AL EYG+NVK   YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

[Close]
BLAST of Cp4.1LG11g02860 vs. Swiss-Prot
Match: TAFAB_DROME (Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster GN=Taf10b PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-20
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 1 

Query: 2   NHSQQATGSRHDD------DAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIR 61
           +H Q + G    D       + LS+F++ L +YTP IPD +  HYL   GFQ  D R++R
Sbjct: 19  SHGQSSGGGGGGDRDRTTPSSHLSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVR 78

Query: 62  LVAVATQKFVADVASDALQHCKAR-QAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVN 121
           L+++A QK+++D+  DALQH KAR            + KD++  LTM+DL  AL +YG+N
Sbjct: 79  LISLAAQKYMSDIIDDALQHSKARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGIN 138

[Close]
BLAST of Cp4.1LG11g02860 vs. Swiss-Prot
Match: TAF10_DROME (Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster GN=Taf10 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 6.8e-18
Identity = 44/114 (38.60%), Postives = 71/114 (62.28%), Query Frame = 1 

Query: 14  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDAL 73
           +++ + E +  L +Y+PTIPD L  H L  +GF   D +++RLV+V+ QKF++D+A+DAL
Sbjct: 53  EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDAL 112

Query: 74  QHCKARQAAV------VKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 122
           QHCK R   +         K  K  KD++  L M+DL  AL ++G+ ++  +YF
Sbjct: 113 QHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLVPALADHGITMRKPQYF 166

[Close]
BLAST of Cp4.1LG11g02860 vs. TrEMBL
Match: A0A0A0LPV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383360 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-68
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]
BLAST of Cp4.1LG11g02860 vs. TrEMBL
Match: A0A0B0NWY6_GOSAR (Transcription initiation factor TFIID subunit 10 OS=Gossypium arboreum GN=F383_22599 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.3e-60
Identity = 118/136 (86.76%), Postives = 129/136 (94.85%), Query Frame = 1 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+ Q++  +HDDD+ALS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSSDGKHDDDSALSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTMDDLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGIDPASREE 136

[Close]
BLAST of Cp4.1LG11g02860 vs. TrEMBL
Match: A0A0D2N586_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G039800 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.3e-60
Identity = 118/136 (86.76%), Postives = 129/136 (94.85%), Query Frame = 1 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+ Q++  +HDDD+ALS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSSDGKHDDDSALSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTMDDLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGIDPASREE 136

[Close]
BLAST of Cp4.1LG11g02860 vs. TrEMBL
Match: A0A059D835_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03202 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-59
Identity = 116/135 (85.93%), Postives = 128/135 (94.81%), Query Frame = 1 

Query: 2   NHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVAT 61
           + SQQ++ SRHDDDAAL++FLASLMEYTPT+PDELVEHYLGKSGFQCPDVRL RLVAVAT
Sbjct: 55  SQSQQSSESRHDDDAALTDFLASLMEYTPTVPDELVEHYLGKSGFQCPDVRLTRLVAVAT 114

Query: 62  QKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 121
           QKFVAD+ASDALQHC+ARQ  VVKDKRDKQQKDKRLIL+MDDLSKALREYGVNVKHQEYF
Sbjct: 115 QKFVADIASDALQHCRARQTTVVKDKRDKQQKDKRLILSMDDLSKALREYGVNVKHQEYF 174

Query: 122 ADSPSTGVDSTSREE 137
           ADSPS G+D+ SR+E
Sbjct: 175 ADSPSAGLDTASRDE 189

[Close]
BLAST of Cp4.1LG11g02860 vs. TrEMBL
Match: A0A061GJD8_THECC (TATA box-binding protein associated factor 10 OS=Theobroma cacao GN=TCM_036855 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.3e-59
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 1 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+ Q+   +HDDD ALS+FLASLMEYTPTIPDELVEHYL KSG QCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSGDGKHDDDTALSDFLASLMEYTPTIPDELVEHYLAKSGVQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVA+VASDALQHCKARQA+V+KDKRDKQQKDKRLILTM+DLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQASVIKDKRDKQQKDKRLILTMEDLSKSLREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  SR+E
Sbjct: 121 FADSPSTGIDPASRDE 136

[Close]
BLAST of Cp4.1LG11g02860 vs. TAIR10
Match: AT4G31720.2 (AT4G31720.2 TBP-associated factor II 15)

HSP 1 Score: 224.2 bits (570), Expect = 5.0e-59
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 1 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTM+DLSKALREYGVNVKH EY
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALREYGVNVKHPEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  +R+E
Sbjct: 121 FADSPSTGMDPATRDE 134

[Close]
BLAST of Cp4.1LG11g02860 vs. NCBI nr
Match: gi|449441834|ref|XP_004138687.1| (PREDICTED: transcription initiation factor TFIID subunit 10 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.2e-68
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]
BLAST of Cp4.1LG11g02860 vs. NCBI nr
Match: gi|659089035|ref|XP_008445293.1| (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo])

HSP 1 Score: 265.8 bits (678), Expect = 4.2e-68
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]
BLAST of Cp4.1LG11g02860 vs. NCBI nr
Match: gi|823121134|ref|XP_012455031.1| (PREDICTED: transcription initiation factor TFIID subunit 10-like [Gossypium raimondii])

HSP 1 Score: 239.6 bits (610), Expect = 3.2e-60
Identity = 118/136 (86.76%), Postives = 129/136 (94.85%), Query Frame = 1 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+ Q++  +HDDD+ALS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSSDGKHDDDSALSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTMDDLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGIDPASREE 136

[Close]
BLAST of Cp4.1LG11g02860 vs. NCBI nr
Match: gi|1009134026|ref|XP_015884224.1| (PREDICTED: transcription initiation factor TFIID subunit 10 [Ziziphus jujuba])

HSP 1 Score: 239.2 bits (609), Expect = 4.2e-60
Identity = 119/136 (87.50%), Postives = 129/136 (94.85%), Query Frame = 1 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+QQ+T +RHDDD ALSEFLASLM+YTPTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQSTEARHDDDPALSEFLASLMDYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVA+VA DALQ CKARQA++VKDKRDKQQKDKRLILTM+DLSKALRE+GVNVKHQEY
Sbjct: 61  TQKFVAEVAGDALQQCKARQASIVKDKRDKQQKDKRLILTMEDLSKALREHGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGMDPASREE 136

[Close]
BLAST of Cp4.1LG11g02860 vs. NCBI nr
Match: gi|629122076|gb|KCW86566.1| (hypothetical protein EUGRSUZ_B03202 [Eucalyptus grandis])

HSP 1 Score: 236.1 bits (601), Expect = 3.6e-59
Identity = 116/135 (85.93%), Postives = 128/135 (94.81%), Query Frame = 1 

Query: 2   NHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVAT 61
           + SQQ++ SRHDDDAAL++FLASLMEYTPT+PDELVEHYLGKSGFQCPDVRL RLVAVAT
Sbjct: 55  SQSQQSSESRHDDDAALTDFLASLMEYTPTVPDELVEHYLGKSGFQCPDVRLTRLVAVAT 114

Query: 62  QKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 121
           QKFVAD+ASDALQHC+ARQ  VVKDKRDKQQKDKRLIL+MDDLSKALREYGVNVKHQEYF
Sbjct: 115 QKFVADIASDALQHCRARQTTVVKDKRDKQQKDKRLILSMDDLSKALREYGVNVKHQEYF 174

Query: 122 ADSPSTGVDSTSREE 137
           ADSPS G+D+ SR+E
Sbjct: 175 ADSPSAGLDTASRDE 189

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g02860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TAF10_ARATH8.8e-5883.09Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana GN=TAF1... [more]
TAF10_HUMAN7.1e-2349.04Transcription initiation factor TFIID subunit 10 OS=Homo sapiens GN=TAF10 PE=1 S... [more]
TAF10_MOUSE7.1e-2349.04Transcription initiation factor TFIID subunit 10 OS=Mus musculus GN=Taf10 PE=1 S... [more]
TAFAB_DROME9.5e-2039.68Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster GN=... [more]
TAF10_DROME6.8e-1838.60Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster GN=T... [more]
BLAST of Cp4.1LG11g02860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPV6_CUCSA2.3e-6899.26Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383360 PE=4 SV=1[more]
A0A0B0NWY6_GOSAR2.3e-6086.76Transcription initiation factor TFIID subunit 10 OS=Gossypium arboreum GN=F383_2... [more]
A0A0D2N586_GOSRA2.3e-6086.76Uncharacterized protein OS=Gossypium raimondii GN=B456_001G039800 PE=4 SV=1[more]
A0A059D835_EUCGR2.5e-5985.93Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03202 PE=4 SV=1[more]
A0A061GJD8_THECC3.3e-5985.29TATA box-binding protein associated factor 10 OS=Theobroma cacao GN=TCM_036855 P... [more]
BLAST of Cp4.1LG11g02860 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G31720.25.0e-5983.09 TBP-associated factor II 15[more]
BLAST of Cp4.1LG11g02860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441834|ref|XP_004138687.1|3.2e-6899.26PREDICTED: transcription initiation factor TFIID subunit 10 [Cucumis sativus][more]
gi|659089035|ref|XP_008445293.1|4.2e-6899.26PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis ... [more]
gi|823121134|ref|XP_012455031.1|3.2e-6086.76PREDICTED: transcription initiation factor TFIID subunit 10-like [Gossypium raim... [more]
gi|1009134026|ref|XP_015884224.1|4.2e-6087.50PREDICTED: transcription initiation factor TFIID subunit 10 [Ziziphus jujuba][more]
gi|629122076|gb|KCW86566.1|3.6e-5985.93hypothetical protein EUGRSUZ_B03202 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
Vocabulary: INTERPRO
TermDefinition
IPR003923TFIID_30kDa
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006366 transcription from RNA polymerase II promoter
biological_process GO:0055114 oxidation-reduction process
biological_process GO:1901006 ubiquinone-6 biosynthetic process
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0003954 NADH dehydrogenase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g02860.1Cp4.1LG11g02860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPRINTSPR01443TFIID30KDSUBcoord: 96..118
score: 9.6E-30coord: 50..72
score: 9.6E-30coord: 30..46
score: 9.6
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPIRPIRSF017246TFIID_TAF10coord: 1..122
score: 1.1
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPANTHERPTHR21242TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 1..125
score: 2.0
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPFAMPF03540TFIID_30kDacoord: 30..79
score: 1.3
NoneNo IPR availablePANTHERPTHR21242:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 1..125
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g02860Cucsa.163030Cucumber (Gy14) v1cgycpeB0430
Cp4.1LG11g02860CmaCh05G003360Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g02860CmoCh05G003370Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g02860Cla022381Watermelon (97103) v1cpewmB101
Cp4.1LG11g02860Csa2G383360Cucumber (Chinese Long) v2cpecuB105
Cp4.1LG11g02860MELO3C011321Melon (DHL92) v3.5.1cpemeB089
Cp4.1LG11g02860ClCG08G013890Watermelon (Charleston Gray)cpewcgB125
Cp4.1LG11g02860CSPI02G24120Wild cucumber (PI 183967)cpecpiB101
Cp4.1LG11g02860Lsi08G012690Bottle gourd (USVL1VR-Ls)cpelsiB100
Cp4.1LG11g02860MELO3C011321.2Melon (DHL92) v3.6.1cpemedB112
Cp4.1LG11g02860Bhi04G000068Wax gourdcpewgoB0142
Cp4.1LG11g02860CsGy2G023900Cucumber (Gy14) v2cgybcpeB169
Cp4.1LG11g02860Carg09379Silver-seed gourdcarcpeB0199
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g02860Cucurbita pepo (Zucchini)cpecpeB146
Cp4.1LG11g02860Cucurbita maxima (Rimu)cmacpeB179
Cp4.1LG11g02860Cucurbita moschata (Rifu)cmocpeB154
Cp4.1LG11g02860Silver-seed gourdcarcpeB1352