Bhi04M000068 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04M000068
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Transcription initiation factor TFIID subunit 10
Location	chr4 : 2114558 .. 2119228 (+)
Sequence length	1794

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCAATGGGTTTTCTATATATTGAGGGCAAAATGTAATGCCATTAGCAATTCAAACGCGCTTGATTTCGAAGAGAGGGAAAACGAAGAAGAAGATGAACCATAGCCAACAAGCTACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTGTAAGATCTCATTTCGATTCTTCTTAACCCAAACTCGCCTTTTTCCCCCCACGCGTTTTTCTGCAAGTTCAAATCATGTCGGTGTTCTTCTTTTTGGGCTATCGTTTTACAGATTCCCGACGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGTAGGTACCTTTTCGTTTGTTTTTATATTTATCGTTCATCAAAACCCTAGGTCTAAAACACGGTCTTTCGACTGACAGATGAGATGAATATATCTTTCTTCTAATGCTATGATTGGTGATGGTTTCTTTTCACAATTTAATCGTACTTGGAGAATTTTCCATTCATTTTCTTGGTTCTTGACTGTTAATATCGATCAACGTGAAGCATAACGAGGCCGTGGGTTTTAGATGGGGGATTTCTTATTTTGGGTATTTTTTTTTTGTTCTAAAGAGACAATGTTAACTATTGTTGCTGATTTTTTTGTTGGGAAGTTGCCTTTATTAATGAACTGAGGATGAGATTGGAGGAGCAGGATTTTTTTTTTTTTTTTTTTAAATCACAGTTCCCAACTCATTCCCTTTAAAGAAATGGGGAATCTTTACTCTGGTATCGGGGTTCTTAGTGGTCTAATTCTTGATGTGTACTTTGTAGGTCAGACAATATATTCTTGCTCGGTTTGTTGTGTTATAGTGTTATGAGACATGAAGATGGCCCTTTTATTGTTCGTAGTGGTATTCATGGTGGCATCATTCATGCGGACTATTGATTCAACGAGTGTGCATTTCTATACTGAGAATTGTGCATTTGGGAAGAGTAGAGAAGTTAATCTAATTCAAAGAATACTCCGTGTACTTCACCATCTTTGTAATTGAGCTGAGATGATTTCTTTGAAGTTAATAAATTTCGTCCTTTCTTTTCCAATGATTCTTCTACTCGTCTCCCATTTCATTTCTTACCTTTTTTTTCCCCATGAAAGTTGCATGTCTAAAATTTTGAATAATGGAGAGGTTATAAGTCATTTGAGATCTTTGATTTTTGTGAGATGAATTTCTCAACCTTGGCCCGGTAAATTGCTTTCTTGGTAAATTGGTTTTCATTTTTGATTAGCTTTAAATGCATTCTCGATGATATGTGATGTTTGTAATTAGAAATTGGATTTCTCCTTGTTGTGAAGATTAGTTTACTGTTTCTTATCAAGCTTCACTTTTGTAGGATCAGGCTTGTTGCTGTTGCGACGCAGAAGTTCGTTGCGGATGTTGCAAGTGATGCCCTCCAGTATGCTTTGTTCTTCTTTCTCATTTATTTGAGGCGTGCAAGTAGGATATGGTCATAACTTGGTTGGAGACCTTATAAAAAAAGCTTGCATTGTAGAATCTTCATTTTAATTACATAATCACAGGAATGCAATTGGTTAATTTGATGGGATTAACTCAAGAGTTCGAGGACCAATTTTCTGAAACAATCTTATGCCACAGAATATTACTTTTTATTGTTTTACAACCAACAATCTTAATTGAAAAAGATCAGCTCTATAGGTTGTACAATTATGTCCTCGAGTTTTATAGTGTTACAACCACTTAGCTCTTATCTCTTAAAGCAACAAGAAAGGCCCTAATGCACAACCAGCGGTTATTACATGGCATGGTAATTGTCTCTCACTTAACAAGATGAGACCCTCATTCCTCCATAATTCCCTTCCCAAAAGTCCTTTACAATCCTTTTCTACTTAAAACACAAAGACTAAGAAACCCTTAATAAGGATAGAAAATAGATAGGGATCCCACTAAAGGTTAGTGTTTAGGAGTGTGCAGCCCCTAAAAGTCTTCAGCCCAAGTTTGACACTAAATTTGCCTGTTTATTATGGGCAGTAGCAAAATGGGTTGATCTAAAGTGTGGGGCTTAGCTCTAAGTGCTTTTATTTCGACAGTCATCCCAAATGGCCTCATTGAAAGTTGGAGAAGTGGTTTCCTCTGTCACATTATCCTTCAAATTGGGGCCAATCCCCCTCTATTAAAGGTTGGTCAATAATCAATTCCCTTTACGGGAACCTCTTTCAGATCTGTCTTTGAAGATCTTGAAAAATGCTGATCTCCCACCCTTTGAGAACAAGGTTTTCACCTATCTCCCATAAATGATTGGTGCTCCTAAATATGTCATGGGAAGTAAGAAACCTCACGACTGAATATACAATTTCACCTTCCACGATTATCAGGATTTCGAGAAGAGACTTTCTTTAGTTGATTGATTTGATTGGTTTTATTAAGTAGATTCACTCTCATGCAACCTATTAAGGGTTTTTTTTAAGATAAATTATTTTTATTCTTATTTATTTATTTATTTCTTTTAAAATTAATATATTTTTTTTATTGCTTTCTTTAGTCTGCCTCATATTTTGTGGGCTCCATTTTTTGAAGTTTTTCATTTAAAAAACCTATTTTGTTGTGCAATGTAGGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGATAAAAGAGATAAACAACAAAAGGTGCATCTTTCGTAACTTAGGGTCTCTTGATTGATAAATTATTTGGCCAATCTAAGATTCTGCTGGTTCAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCAAAGGCACTTCGTGAGGTAAGCTCGAAATGTTATTTACTTCTCATCAAGCACAATGGATGATTCATATAGAAATAATAGATTAATTTTGTTATGCACTCTCACTTTTAGGTGGTGCCATGGGTGTTTTGTTTTTTCTTTGCCGGGGGGGGGGGGGATGCTTGGAATGGATGATTCATATAGACATAAGACATTAATTTTGTTATACACTCTCACTTTTGGCTATGGGTGGGTTGTGGGCGATAAATTATCAATGTCACTTCAGGCTTCAAAGTTGATGTTGGCAGGGGAGTTCTTAAAAGAGTTGTGATCTGTCCTAAAGGTGTCTGCTTGTTTTGTGTAATAAATTTCTGTCTGGTTGTAATCTTGTGAAGAATTTGTGATTTTTAGTTCTTCTAATTGTATGGTGCATCCTTTGTCATTGATACCCTTTTGAAGATAGACACTTGAAGATCTAGCTCCTTATCCATAACTAACTGCCTCGTTGCTACTTGATGAACAGTATGGCGTGAATGTGAAACATCAGGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATAATGGTTATAATATCTCATTGTTGTCTGTGTTCGTGAATATACTGAATTACTGATGCATATAGTTCAGGGTTGGAGTATTTCTTGCAGACTAATTTTCTCTGCCGTGCACAGTCATGAGTCATGTTGTACATTATAGCATTGCTTTGAATAACAAATTAAGTAGCCGTGTTTTCCTAGTCGGATTCGGTTACTACTTCTATAGCGAGGCCTTAGCCTTTTGGAACTATCATAGCGGCAGATATATTCAACATTTTCTACTTGTCTATTGAATGAAACTGTGCATAATGAAAAACCAAAACGTCATTCTTGTTCATACAAGGTTATGTAAAGATGGTTAAACCACATCCTGGCGCTATCAGAACGCATTCTCCATGGATTTTAAACGTCAATTTACTTTTAATTGTTTCAGCCTTGGGATTAAATAAGAAGGGGACTTTTGTAGGTGACATTTCTATTGATTCTGAATGGGATTTGCAGTTCACTTACCAAGTTTGTGCTTTATACAATACTTGGTCAGAGGGACAGAATAGTTCTTTCAAGACTTTTCATCTCCAATTTTGAACAATTCAATAGTTGCCAGCTTGATGAAATGATCCCATGCAGAGATTTCGAAGCCCTTCTGATCTCATGCAAAATCTCTGGACTAACGAGTTGTGTAAAATTGTCATTTGATTATATGAAGAGCATATAAATATGCTAGTCATATGGTCCAACCTTCTCCAATAATTTCTCCACGAAGCTTTCCTTTGTTACAAAATTTGAAGGTGGATGGATGGATCTGGCCTTAGGATTATTTTGTAAAATTATGGAAGGGAAGTATGAGGGGAAATTTTGTACGGATGATTAAAAAATAGAGCAAATGATTCAATTTTTTAAAAAATGTCGAATGATCATTTACTAACGTCAAATTCGCGTGAAATTATTAAAACATACTCACTATATTAGTGTCTTGCTCACTCTCTCTCTATCTCTTGCTCACTCTCTATATCTTTCGCTCTCTCGCTCTTTGTCCATCTTGCTCTTGCTCTCTAAATTGGAATCAGAATCCATATTTCAACTCCTCAGCTTTCAAAAACCCATCATCCCCAATCTTCTCCAGATTTCCCAAATCATTTAAAGTACGAAACCAAGCTTCAAAGCATAGAGTCGGGATTCAGCAACTAGTTGCGCATCATTGATCGGAGCTGCATTGTAGAACAAAATCCCACTGGAGGAGAATGAAATCGTCTCAGAGGGAGGAGAAGAAAATCGTGTGAAGGAAGGAGGAAAAAAGCAAGGGC

mRNA sequence

GGCCAATGGGTTTTCTATATATTGAGGGCAAAATGTAATGCCATTAGCAATTCAAACGCGCTTGATTTCGAAGAGAGGGAAAACGAAGAAGAAGATGAACCATAGCCAACAAGCTACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTTGCTGTTGCGACGCAGAAGTTCGTTGCGGATGTTGCAAGTGATGCCCTCCAGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGATAAAAGAGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCAAAGGCACTTCGTGAGTATGGCGTGAATGTGAAACATCAGGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATAATGGTTATAATATCTCATTGTTGTCTGTGTTCGTGAATATACTGAATTACTGATGCATATAGTTCAGGGTTGGAGTATTTCTTGCAGACTAATTTTCTCTGCCGTGCACAGTCATGAGTCATGTTGTACATTATAGCATTGCTTTGAATAACAAATTAAGTAGCCGTGTTTTCCTAGTCGGATTCGGTTACTACTTCTATAGCGAGGCCTTAGCCTTTTGGAACTATCATAGCGGCAGATATATTCAACATTTTCTACTTGTCTATTGAATGAAACTGTGCATAATGAAAAACCAAAACGTCATTCTTGTTCATACAAGGTTATGTAAAGATGGTTAAACCACATCCTGGCGCTATCAGAACGCATTCTCCATGGATTTTAAACGTCAATTTACTTTTAATTGTTTCAGCCTTGGGATTAAATAAGAAGGGGACTTTTGTAGGTGACATTTCTATTGATTCTGAATGGGATTTGCAGTTCACTTACCAAGTTTGTGCTTTATACAATACTTGGTCAGAGGGACAGAATAGTTCTTTCAAGACTTTTCATCTCCAATTTTGAACAATTCAATAGTTGCCAGCTTGATGAAATGATCCCATGCAGAGATTTCGAAGCCCTTCTGATCTCATGCAAAATCTCTGGACTAACGAGTTGTGTAAAATTGTCATTTGATTATATGAAGAGCATATAAATATGCTAGTCATATGGTCCAACCTTCTCCAATAATTTCTCCACGAAGCTTTCCTTTGTTACAAAATTTGAAGGTGGATGGATGGATCTGGCCTTAGGATTATTTTGTAAAATTATGGAAGGGAAGTATGAGGGGAAATTTTGTACGGATGATTAAAAAATAGAGCAAATGATTCAATTTTTTAAAAAATGTCGAATGATCATTTACTAACGTCAAATTCGCGTGAAATTATTAAAACATACTCACTATATTAGTGTCTTGCTCACTCTCTCTCTATCTCTTGCTCACTCTCTATATCTTTCGCTCTCTCGCTCTTTGTCCATCTTGCTCTTGCTCTCTAAATTGGAATCAGAATCCATATTTCAACTCCTCAGCTTTCAAAAACCCATCATCCCCAATCTTCTCCAGATTTCCCAAATCATTTAAAGTACGAAACCAAGCTTCAAAGCATAGAGTCGGGATTCAGCAACTAGTTGCGCATCATTGATCGGAGCTGCATTGTAGAACAAAATCCCACTGGAGGAGAATGAAATCGTCTCAGAGGGAGGAGAAGAAAATCGTGTGAAGGAAGGAGGAAAAAAGCAAGGGC

Coding sequence (CDS)

ATGCCATTAGCAATTCAAACGCGCTTGATTTCGAAGAGAGGGAAAACGAAGAAGAAGATGAACCATAGCCAACAAGCTACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTTGCTGTTGCGACGCAGAAGTTCGTTGCGGATGTTGCAAGTGATGCCCTCCAGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGATAAAAGAGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCAAAGGCACTTCGTGAGTATGGCGTGAATGTGAAACATCAGGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGA

Protein sequence

MPLAIQTRLISKRGKTKKKMNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE

Homology

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BLAST of Bhi04M000068 vs. Swiss-Prot
Match: sp|O04173|TAF10_ARATH (Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.0e-58
Identity = 114/136 (83.82%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTMEDLSKALREYGVNVKH EY
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALREYGVNVKHPEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTG+D  +R+E
Sbjct: 121 FADSPSTGMDPATRDE 134

[Close]

BLAST of Bhi04M000068 vs. Swiss-Prot
Match: sp|Q12962|TAF10_HUMAN (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.8e-23
Identity = 52/104 (50.00%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 37  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 96
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 97  ARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 141
            +  A    +   + KD++  LTMEDL+ AL EYG+NVK   YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

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BLAST of Bhi04M000068 vs. Swiss-Prot
Match: sp|Q8K0H5|TAF10_MOUSE (Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf10 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.8e-23
Identity = 52/104 (50.00%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 37  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 96
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 97  ARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 141
            +  A    +   + KD++  LTMEDL+ AL EYG+NVK   YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

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BLAST of Bhi04M000068 vs. Swiss-Prot
Match: sp|Q9XZT7|TAFAB_DROME (Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=7227 GN=Taf10b PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.0e-20
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 37  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 96
           LS+F++ L +YTP IPD +  HYL   GFQ  D R++RL+++A QK+++D+  DALQH K
Sbjct: 41  LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHSK 100

Query: 97  AR-QAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 140
           AR            + KD++  LTMEDL  AL +YG+NV+  +Y
Sbjct: 101 ARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGINVRKVDY 144

[Close]

BLAST of Bhi04M000068 vs. Swiss-Prot
Match: sp|Q9U5W9|TAF10_DROME (Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster OX=7227 GN=Taf10 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-18
Identity = 45/114 (39.47%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 33  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDAL 92
           +++ + E +  L +Y+PTIPD L  H L  +GF   D +++RLV+V+ QKF++D+A+DAL
Sbjct: 53  EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDAL 112

Query: 93  QHCKARQAAV------VKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 141
           QHCK R   +         K  K  KD++  L MEDL  AL ++G+ ++  +YF
Sbjct: 113 QHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLVPALADHGITMRKPQYF 166

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BLAST of Bhi04M000068 vs. TAIR10
Match: AT4G31720.2 (TBP-associated factor II 15)

HSP 1 Score: 224.9 bits (572), Expect = 3.3e-59
Identity = 114/136 (83.82%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTMEDLSKALREYGVNVKH EY
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALREYGVNVKHPEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTG+D  +R+E
Sbjct: 121 FADSPSTGMDPATRDE 134

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BLAST of Bhi04M000068 vs. TrEMBL
Match: tr|A0A1S3BD75|A0A1S3BD75_CUCME (Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC103488368 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.7e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of Bhi04M000068 vs. TrEMBL
Match: tr|A0A0A0LPV6|A0A0A0LPV6_CUCSA (Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=Csa_2G383360 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 2.4e-67
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of Bhi04M000068 vs. TrEMBL
Match: tr|A0A1U8P058|A0A1U8P058_GOSHI (Transcription initiation factor TFIID subunit 10 OS=Gossypium hirsutum OX=3635 GN=LOC107953719 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.1e-59
Identity = 117/141 (82.98%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 15  KTKKKMNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIR 74
           + K++MNH+ Q++  +HDDD+ LS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIR
Sbjct: 46  RRKERMNHNPQSSDGKHDDDSGLSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIR 105

Query: 75  LVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNV 134
           LVAVATQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTM+DLSK+LREYGVNV
Sbjct: 106 LVAVATQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNV 165

Query: 135 KHQEYFADSPSTGVDSTSREE 156
           KHQEYFADSPSTG+D  SREE
Sbjct: 166 KHQEYFADSPSTGIDPASREE 186

[Close]

BLAST of Bhi04M000068 vs. TrEMBL
Match: tr|A0A2P5RK48|A0A2P5RK48_GOSBA (Transcription initiation factor TFIID subunit 10 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31699 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.4e-59
Identity = 117/136 (86.03%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH+ Q++  +HDDD+ALS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSSDGKHDDDSALSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTM+DLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGIDPASREE 136

[Close]

BLAST of Bhi04M000068 vs. TrEMBL
Match: tr|A0A0B0NWY6|A0A0B0NWY6_GOSAR (Transcription initiation factor TFIID subunit 10 OS=Gossypium arboreum OX=29729 GN=F383_22599 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.4e-59
Identity = 117/136 (86.03%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH+ Q++  +HDDD+ALS+FLASLM+Y PTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNPQSSDGKHDDDSALSDFLASLMDYAPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVA+VASDALQHCKARQAAVVKDKR+KQQKDKRLILTM+DLSK+LREYGVNVKHQEY
Sbjct: 61  TQKFVAEVASDALQHCKARQAAVVKDKREKQQKDKRLILTMDDLSKSLREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGIDPASREE 136

[Close]

BLAST of Bhi04M000068 vs. NCBI nr
Match: XP_008445293.1 (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo])

HSP 1 Score: 266.2 bits (679), Expect = 7.2e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of Bhi04M000068 vs. NCBI nr
Match: XP_022962589.1 (transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997339.1 transcription initiation factor TFIID subunit 10 [Cucurbita maxima] >XP_023547186.1 transcription initiation factor TFIID subunit 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.0 bits (676), Expect = 1.6e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of Bhi04M000068 vs. NCBI nr
Match: XP_004138687.1 (PREDICTED: transcription initiation factor TFIID subunit 10 [Cucumis sativus] >KGN63014.1 hypothetical protein Csa_2G383360 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 3.6e-67
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]

BLAST of Bhi04M000068 vs. NCBI nr
Match: XP_022132183.1 (transcription initiation factor TFIID subunit 10 [Momordica charantia])

HSP 1 Score: 256.5 bits (654), Expect = 5.7e-65
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTGVD TSREE
Sbjct: 121 FADSPSTGVDPTSREE 136

[Close]

BLAST of Bhi04M000068 vs. NCBI nr
Match: XP_015884224.1 (transcription initiation factor TFIID subunit 10 [Ziziphus jujuba])

HSP 1 Score: 239.6 bits (610), Expect = 7.2e-60
Identity = 120/136 (88.24%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79
           MNH+QQ+T +RHDDD ALSEFLASLM+YTPTIPDELVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQSTEARHDDDPALSEFLASLMDYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139
           TQKFVA+VA DALQ CKARQA++VKDKRDKQQKDKRLILTMEDLSKALRE+GVNVKHQEY
Sbjct: 61  TQKFVAEVAGDALQQCKARQASIVKDKRDKQQKDKRLILTMEDLSKALREHGVNVKHQEY 120

Query: 140 FADSPSTGVDSTSREE 156
           FADSPSTG+D  SREE
Sbjct: 121 FADSPSTGMDPASREE 136

The following BLAST results are available for this feature:

BLAST of Bhi04M000068 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04173\|TAF10_ARATH	6.0e-58	83.82	Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q12962\|TAF10_HUMAN	4.8e-23	50.00	Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF1...	[more]
sp\|Q8K0H5\|TAF10_MOUSE	4.8e-23	50.00	Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf...	[more]
sp\|Q9XZT7\|TAFAB_DROME	5.0e-20	45.19	Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=...	[more]
sp\|Q9U5W9\|TAF10_DROME	3.6e-18	39.47	Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster OX=7...	[more]

BLAST of Bhi04M000068 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31720.2	3.3e-59	83.82	TBP-associated factor II 15	[more]

BLAST of Bhi04M000068 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BD75\|A0A1S3BD75_CUCME	4.7e-68	100.00	Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A0A0LPV6\|A0A0A0LPV6_CUCSA	2.4e-67	98.53	Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=C...	[more]
tr\|A0A1U8P058\|A0A1U8P058_GOSHI	1.1e-59	82.98	Transcription initiation factor TFIID subunit 10 OS=Gossypium hirsutum OX=3635 G...	[more]
tr\|A0A2P5RK48\|A0A2P5RK48_GOSBA	2.4e-59	86.03	Transcription initiation factor TFIID subunit 10 OS=Gossypium barbadense OX=3634...	[more]
tr\|A0A0B0NWY6\|A0A0B0NWY6_GOSAR	2.4e-59	86.03	Transcription initiation factor TFIID subunit 10 OS=Gossypium arboreum OX=29729 ...	[more]

BLAST of Bhi04M000068 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445293.1	7.2e-68	100.00	PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis ...	[more]
XP_022962589.1	1.6e-67	99.26	transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997...	[more]
XP_004138687.1	3.6e-67	98.53	PREDICTED: transcription initiation factor TFIID subunit 10 [Cucumis sativus] >K...	[more]
XP_022132183.1	5.7e-65	95.59	transcription initiation factor TFIID subunit 10 [Momordica charantia]	[more]
XP_015884224.1	7.2e-60	88.24	transcription initiation factor TFIID subunit 10 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006352	DNA-templated transcription, initiation

Vocabulary: **INTERPRO**
Term	Definition
IPR003923	TFIID_30kDa

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003743	translation initiation factor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi04G000068	Bhi04G000068	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi04M000068	Bhi04M000068-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi04M000068.utr5p1	Bhi04M000068.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi04M000068.exon1	Bhi04M000068.exon1	exon
Bhi04M000068.exon2	Bhi04M000068.exon2	exon
Bhi04M000068.exon3	Bhi04M000068.exon3	exon
Bhi04M000068.exon4	Bhi04M000068.exon4	exon
Bhi04M000068.exon5	Bhi04M000068.exon5	exon
Bhi04M000068.exon6	Bhi04M000068.exon6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi04M000068	cds.Bhi04M000068	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi04M000068.utr3p1	Bhi04M000068.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PRINTS	PR01443	TFIID30KDSUB	coord: 69..91 score: 64.35 coord: 49..65 score: 60.0 coord: 115..137 score: 56.52
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PFAM	PF03540	TFIID_30kDa	coord: 49..98 e-value: 1.8E-24 score: 85.3
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PIRSF	PIRSF017246	TFIID_TAF10	coord: 5..141 e-value: 6.7E-55 score: 184.2
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	PANTHER	PTHR21242	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10	coord: 16..140
IPR003923	Transcription initiation factor TFIID, 23-30kDa subunit	CDD	cd07982	TAF10	coord: 35..140 e-value: 9.47209E-56 score: 172.025
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..33