MELO3C012890 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012890
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative MYB transcription factor
Location	chr4 : 14003687 .. 14004154 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAAGAACAATCTATAGCACAAGAACCCTTCAAATATACGACCTATGAATCGATGGGGAGCTCTGCTTTGGCTTTTTCACCACCTCATTGCTCAAGCGAAAGCTCCTCCAACATCACGGGGGAGAACGGTGAGTGGTGGACGAATAATCTACCGGAGGCGGATGAGAATTTTTGGAGGGAAGTTTTGGGGAGCGACCAACAAATGGCGACGGTGGGAAACCAACAAGGATTTGGAGGTCAAACTAGTGAAGGTCAATTTGGTATTTTTACAAAGGAGCAGCCAATTCAAGAGACTACGGATTTTTGGACAATATTTTTGCAAGAGGAGGGGATTTATCTGAGTTGAAAACAGATATTATGAGGCTAATGAAACTAATTACTTTTCTTTCTTTCTTCTTCTCTCTCTCTTTTTCTTTTTTGGGTGGGAATTAAAACTTAGTGGGTTATAATGACAATAGGCTAC

mRNA sequence

ATGAATGAAGAACAATCTATAGCACAAGAACCCTTCAAATATACGACCTATGAATCGATGGGGAGCTCTGCTTTGGCTTTTTCACCACCTCATTGCTCAAGCGAAAGCTCCTCCAACATCACGGGGGAGAACGGTGAGTGGTGGACGAATAATCTACCGGAGGCGGATGAGAATTTTTGGAGGGAAGTTTTGGGGAGCGACCAACAAATGGCGACGGTGGGAAACCAACAAGGATTTGGAGGTCAAACTAGTGAAGGTCAATTTGGTATTTTTACAAAGGAGCAGCCAATTCAAGAGACTACGGATTTTTGGACAATATTTTTGCAAGAGGAGGGGATTTATCTGAGTTGAAAACAGATATTATGAGGCTAATGAAACTAATTACTTTTCTTTCTTTCTTCTTCTCTCTCTCTTTTTCTTTTTTGGGTGGGAATTAAAACTTAGTGGGTTATAATGACAATAGGCTAC

Coding sequence (CDS)

ATGAATGAAGAACAATCTATAGCACAAGAACCCTTCAAATATACGACCTATGAATCGATGGGGAGCTCTGCTTTGGCTTTTTCACCACCTCATTGCTCAAGCGAAAGCTCCTCCAACATCACGGGGGAGAACGGTGAGTGGTGGACGAATAATCTACCGGAGGCGGATGAGAATTTTTGGAGGGAAGTTTTGGGGAGCGACCAACAAATGGCGACGGTGGGAAACCAACAAGGATTTGGAGGTCAAACTAGTGAAGGTCAATTTGGTATTTTTACAAAGGAGCAGCCAATTCAAGAGACTACGGATTTTTGGACAATATTTTTGCAAGAGGAGGGGATTTATCTGAGTTGA

Protein sequence

MNEEQSIAQEPFKYTTYESMGSSALAFSPPHCSSESSSNITGENGEWWTNNLPEADENFWREVLGSDQQMATVGNQQGFGGQTSEGQFGIFTKEQPIQETTDFWTIFLQEEGIYLS*

Homology

[Close]

BLAST of MELO3C012890 vs. TrEMBL
Match: A0A0A0L7F4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G386830 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.7e-30
Identity = 69/84 (82.14%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 33  SSESSSNITGENGEWWTNNLPEADENFWREVLGSDQQMATVGNQQGFGGQTSEGQFGIFT 92
           +SESSS IT ENGE WTNNLPEADENFWREVLGSDQ MATVGNQQGF G+TSE Q G  T
Sbjct: 87  NSESSSIITAENGESWTNNLPEADENFWREVLGSDQ-MATVGNQQGFEGETSERQLGNLT 146

Query: 93  KEQPIQETTDFWTIFLQEEGIYLS 117
            EQP  ETTDFWTIF QEEGIYLS
Sbjct: 147 NEQPTHETTDFWTIFFQEEGIYLS 169

[Close]

BLAST of MELO3C012890 vs. NCBI nr
Match: gi|659093219|ref|XP_008447428.1| (PREDICTED: myb-related protein Myb4-like [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 5.1e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MNEEQSIAQEPFKYTTYESMGSSALAFSPPHCSSESSSNITGENGEWWTNNLPEADENFW 60
           MNEEQSIAQEPFKYTTYESMGSSALAFSPPHCSSESSSNITGENGEWWTNNLPEADENFW
Sbjct: 131 MNEEQSIAQEPFKYTTYESMGSSALAFSPPHCSSESSSNITGENGEWWTNNLPEADENFW 190

Query: 61  REVLGSDQQMATVGNQQGFGGQTSEGQFGIFTKEQPIQETTDFWTIFLQEEGIYLS 117
           REVLGSDQQMATVGNQQGFGGQTSEGQFGIFTKEQPIQETTDFWTIFLQEEGIYLS
Sbjct: 191 REVLGSDQQMATVGNQQGFGGQTSEGQFGIFTKEQPIQETTDFWTIFLQEEGIYLS 246

[Close]

BLAST of MELO3C012890 vs. NCBI nr
Match: gi|449468552|ref|XP_004151985.1| (PREDICTED: myb-related protein Myb4-like [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 4.6e-47
Identity = 97/116 (83.62%), Postives = 100/116 (86.21%), Query Frame = 1


Query: 1   MNEEQSIAQEPFKYTTYESMGSSALAFSPPHCSSESSSNITGENGEWWTNNLPEADENFW 60
           MNEE+SIAQ+PFKYT Y SM SSALAFSPPHCSSESSS IT ENGE WTNNLPEADENFW
Sbjct: 131 MNEEESIAQQPFKYTNYGSMPSSALAFSPPHCSSESSSIITAENGESWTNNLPEADENFW 190

Query: 61  REVLGSDQQMATVGNQQGFGGQTSEGQFGIFTKEQPIQETTDFWTIFLQEEGIYLS 117
           REVLGSD QMATVGNQQGF G+TSE Q G  T EQP  ETTDFWTIF QEEGIYLS
Sbjct: 191 REVLGSD-QMATVGNQQGFEGETSERQLGNLTNEQPTHETTDFWTIFFQEEGIYLS 245

[Close]

BLAST of MELO3C012890 vs. NCBI nr
Match: gi|700202777|gb|KGN57910.1| (hypothetical protein Csa_3G386830 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-30
Identity = 69/84 (82.14%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 33  SSESSSNITGENGEWWTNNLPEADENFWREVLGSDQQMATVGNQQGFGGQTSEGQFGIFT 92
           +SESSS IT ENGE WTNNLPEADENFWREVLGSDQ MATVGNQQGF G+TSE Q G  T
Sbjct: 87  NSESSSIITAENGESWTNNLPEADENFWREVLGSDQ-MATVGNQQGFEGETSERQLGNLT 146

Query: 93  KEQPIQETTDFWTIFLQEEGIYLS 117
            EQP  ETTDFWTIF QEEGIYLS
Sbjct: 147 NEQPTHETTDFWTIFFQEEGIYLS 169

The following BLAST results are available for this feature:

BLAST of MELO3C012890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7F4_CUCSA	4.7e-30	82.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G386830 PE=4 SV=1	[more]

BLAST of MELO3C012890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093219\|ref\|XP_008447428.1\|	5.1e-62	100.00	PREDICTED: myb-related protein Myb4-like [Cucumis melo]	[more]
gi\|449468552\|ref\|XP_004151985.1\|	4.6e-47	83.62	PREDICTED: myb-related protein Myb4-like [Cucumis sativus]	[more]
gi\|700202777\|gb\|KGN57910.1\|	6.7e-30	82.14	hypothetical protein Csa_3G386830 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU65221	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012890T1	MELO3C012890T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU65221	MU65221	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012890	Cla005982	Watermelon (97103) v1	mewmB357
MELO3C012890	ClCG07G001040	Watermelon (Charleston Gray)	mewcgB346
MELO3C012890	Cla97C07G129310	Watermelon (97103) v2	mewmbB349
MELO3C012890	Bhi05G000155	Wax gourd	mewgoB401
MELO3C012890	CSPI03G22570	Wild cucumber (PI 183967)	cpimeB203
MELO3C012890	Cucsa.053600	Cucumber (Gy14) v1	cgymeB035
MELO3C012890	CmaCh02G017490	Cucurbita maxima (Rimu)	cmameB568
MELO3C012890	CmaCh19G000880	Cucurbita maxima (Rimu)	cmameB471
MELO3C012890	CmoCh19G001010	Cucurbita moschata (Rifu)	cmomeB461
MELO3C012890	Lsi05G010160	Bottle gourd (USVL1VR-Ls)	lsimeB356
MELO3C012890	CsGy3G021630	Cucumber (Gy14) v2	cgybmeB176
MELO3C012890	Carg16877	Silver-seed gourd	carmeB0744
MELO3C012890	Carg08966	Silver-seed gourd	carmeB0772
MELO3C012890	CsaV3_3G022290	Cucumber (Chinese Long) v3	cucmeB209

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012890	Cucumber (Chinese Long) v3	cucmeB215
MELO3C012890	Watermelon (97103) v2	mewmbB335
MELO3C012890	Wax gourd	mewgoB396
MELO3C012890	Melon (DHL92) v3.5.1	memeB140
MELO3C012890	Cucurbita moschata (Rifu)	cmomeB557
MELO3C012890	Wild cucumber (PI 183967)	cpimeB210
MELO3C012890	Cucumber (Chinese Long) v2	cumeB213
MELO3C012890	Cucumber (Chinese Long) v2	cumeB219
MELO3C012890	Watermelon (97103) v1	mewmB371
MELO3C012890	Cucurbita pepo (Zucchini)	cpemeB231
MELO3C012890	Cucurbita pepo (Zucchini)	cpemeB690
MELO3C012890	Bottle gourd (USVL1VR-Ls)	lsimeB358