CsGy3G021630 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G021630
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	myb-related protein Myb4-like
Location	Chr3 : 19724727 .. 19725255 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAGCTCTGCTTTGGCTTTTTCACCACCTCATTGCTCCAGCGAAAGCTCCTCCATCATCACGGCGGAGAATGGTGAGTCGTGGACGAATAATCTACCGGAGGCGGATGAGAATTTTTGGAGGGAAGTTTTGGGCAGCGACCAAATGGCAACGGTGGGAAACCAACAAGGATTTGAAGGTGAAACTAGTGAACGTCAACTTGGTAATCTTACAAATGAGCAGCCAACTCATGAGACTACGGATTTTTGGACAATATTTTTTCAAGAGGAGGGGATTTATCTGAGTTGAAAGATATGATATTATGAGGTTGATGAAGCTAATTAGTTTTTTTTTCTTTTGGGTGGGAAAAACTTAGTGGGTTATAATGACAATAGGCTACTTTTCTTTTCTTTTTTTCCATTTTTTTGACCTTTTAGGGGGAGAGATTGTATTCACCATTCCAAAAGTTGTCAAAATTTATGGGGTTTTACACATCACAACGTTTAGAAAGGAAAAATCAGAACAGAAAAAAAAATCAGAAAAATAG

mRNA sequence

ATGCCGAGCTCTGCTTTGGCTTTTTCACCACCTCATTGCTCCAGCGAAAGCTCCTCCATCATCACGGCGGAGAATGGTGAGTCGTGGACGAATAATCTACCGGAGGCGGATGAGAATTTTTGGAGGGAAGTTTTGGGCAGCGACCAAATGGCAACGGTGGGAAACCAACAAGGATTTGAAGGTGAAACTAGTGAACGTCAACTTGGGGGAGAGATTGTATTCACCATTCCAAAAGTTGTCAAAATTTATGGGGTTTTACACATCACAACGTTTAGAAAGGAAAAATCAGAACAGAAAAAAAAATCAGAAAAATAG

Coding sequence (CDS)

ATGCCGAGCTCTGCTTTGGCTTTTTCACCACCTCATTGCTCCAGCGAAAGCTCCTCCATCATCACGGCGGAGAATGGTGAGTCGTGGACGAATAATCTACCGGAGGCGGATGAGAATTTTTGGAGGGAAGTTTTGGGCAGCGACCAAATGGCAACGGTGGGAAACCAACAAGGATTTGAAGGTGAAACTAGTGAACGTCAACTTGGGGGAGAGATTGTATTCACCATTCCAAAAGTTGTCAAAATTTATGGGGTTTTACACATCACAACGTTTAGAAAGGAAAAATCAGAACAGAAAAAAAAATCAGAAAAATAG

Protein sequence

MPSSALAFSPPHCSSESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFEGETSERQLGGEIVFTIPKVVKIYGVLHITTFRKEKSEQKKKSEK

Homology

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BLAST of CsGy3G021630 vs. NCBI nr
Match: XP_004151985.1 (PREDICTED: myb-related protein Myb4-like [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MPSSALAFSPPHCSSESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFE 60
           MPSSALAFSPPHCSSESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFE
Sbjct: 150 MPSSALAFSPPHCSSESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFE 209

Query: 61  GETSERQLG 70
           GETSERQLG
Sbjct: 210 GETSERQLG 218

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BLAST of CsGy3G021630 vs. NCBI nr
Match: XP_008447428.1 (PREDICTED: myb-related protein Myb4-like [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 61/70 (87.14%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1   MPSSALAFSPPHCSSESSSIITAENGESWTNNLPEADENFWREVLGSD-QMATVGNQQGF 60
           M SSALAFSPPHCSSESSS IT ENGE WTNNLPEADENFWREVLGSD QMATVGNQQGF
Sbjct: 150 MGSSALAFSPPHCSSESSSNITGENGEWWTNNLPEADENFWREVLGSDQQMATVGNQQGF 209

Query: 61  EGETSERQLG 70
            G+TSE Q G
Sbjct: 210 GGQTSEGQFG 219

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BLAST of CsGy3G021630 vs. NCBI nr
Match: KGN57910.1 (hypothetical protein Csa_3G386830 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 4.0e-22
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 14  SSESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFEGETSERQLG 70
           +SESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFEGETSERQLG
Sbjct: 87  NSESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFEGETSERQLG 142

[Close]

BLAST of CsGy3G021630 vs. NCBI nr
Match: XP_023532934.1 (transcription factor MYB14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1   MPSSALAFSPPHCSSESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFE 60
           M S   A SPPHCSSESSSI+TAENGE  TNNLPEAD++FW EVL +DQ+A VG+QQGF 
Sbjct: 161 MQSCGSASSPPHCSSESSSIVTAENGELSTNNLPEADDSFWMEVLANDQIAMVGSQQGFV 220

Query: 61  GETSERQLG 70
           GE  E Q G
Sbjct: 221 GEIYEGQFG 229

[Close]

BLAST of CsGy3G021630 vs. NCBI nr
Match: XP_022930976.1 (transcription factor MYB14-like [Cucurbita moschata] >XP_022930977.1 transcription factor MYB14-like [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 9.5e-16
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1   MPSSALAFSPPHCSSESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFE 60
           M S   A SPPHCSSESSS++TA+NGE  TNNLPEAD++FW EVL +DQ+A VG+QQGF 
Sbjct: 161 MQSCGSASSPPHCSSESSSVVTADNGELSTNNLPEADDSFWMEVLANDQIAMVGSQQGFV 220

Query: 61  GETSERQLG 70
           GE  + Q G
Sbjct: 221 GEIYQGQFG 229

[Close]

BLAST of CsGy3G021630 vs. TrEMBL
Match: tr|A0A1S3BI17|A0A1S3BI17_CUCME (myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103489876 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 61/70 (87.14%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1   MPSSALAFSPPHCSSESSSIITAENGESWTNNLPEADENFWREVLGSD-QMATVGNQQGF 60
           M SSALAFSPPHCSSESSS IT ENGE WTNNLPEADENFWREVLGSD QMATVGNQQGF
Sbjct: 150 MGSSALAFSPPHCSSESSSNITGENGEWWTNNLPEADENFWREVLGSDQQMATVGNQQGF 209

Query: 61  EGETSERQLG 70
            G+TSE Q G
Sbjct: 210 GGQTSEGQFG 219

[Close]

BLAST of CsGy3G021630 vs. TrEMBL
Match: tr|A0A0A0L7F4|A0A0A0L7F4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G386830 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-22
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 14  SSESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFEGETSERQLG 70
           +SESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFEGETSERQLG
Sbjct: 87  NSESSSIITAENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFEGETSERQLG 142

The following BLAST results are available for this feature:

BLAST of CsGy3G021630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151985.1	1.8e-30	100.00	PREDICTED: myb-related protein Myb4-like [Cucumis sativus]	[more]
XP_008447428.1	1.6e-23	87.14	PREDICTED: myb-related protein Myb4-like [Cucumis melo]	[more]
KGN57910.1	4.0e-22	98.21	hypothetical protein Csa_3G386830 [Cucumis sativus]	[more]
XP_023532934.1	1.5e-16	69.57	transcription factor MYB14-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930976.1	9.5e-16	65.22	transcription factor MYB14-like [Cucurbita moschata] >XP_022930977.1 transcripti...	[more]

BLAST of CsGy3G021630 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G021630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G021630 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BI17\|A0A1S3BI17_CUCME	1.1e-23	87.14	myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103489876 PE=4 SV=1	[more]
tr\|A0A0A0L7F4\|A0A0A0L7F4_CUCSA	2.6e-22	98.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G386830 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G021630.1	CsGy3G021630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G021630	MELO3C012890	Melon (DHL92) v3.5.1	cgybmeB176
CsGy3G021630	ClCG07G001040	Watermelon (Charleston Gray)	cgybwcgB239
CsGy3G021630	Lsi05G010160	Bottle gourd (USVL1VR-Ls)	cgyblsiB202
CsGy3G021630	MELO3C012890.2	Melon (DHL92) v3.6.1	cgybmedB177
CsGy3G021630	CsaV3_3G022290	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G021630	Cla97C07G129310	Watermelon (97103) v2	cgybwmbB232
CsGy3G021630	Bhi05G000155	Wax gourd	cgybwgoB294
CsGy3G021630	Carg08966	Silver-seed gourd	carcgybB0771
CsGy3G021630	Carg16877	Silver-seed gourd	carcgybB0747

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G021630	Cucurbita maxima (Rimu)	cgybcmaB383
CsGy3G021630	Cucurbita maxima (Rimu)	cgybcmaB392
CsGy3G021630	Cucurbita moschata (Rifu)	cgybcmoB355
CsGy3G021630	Cucurbita moschata (Rifu)	cgybcmoB363
CsGy3G021630	Cucurbita pepo (Zucchini)	cgybcpeB338
CsGy3G021630	Cucurbita pepo (Zucchini)	cgybcpeB433
CsGy3G021630	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G021630	Bottle gourd (USVL1VR-Ls)	cgyblsiB212
CsGy3G021630	Watermelon (97103) v1	cgybwmB206
CsGy3G021630	Wild cucumber (PI 183967)	cgybcpiB110