Carg16877 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16877
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MYB-related transcription factor
Location	Cucurbita_argyrosperma_scaffold_105 : 593133 .. 594709 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGCTCCATGCTGTGAGAAAATGGGGCTCAAGAAAGGCCCTTGGACCCCTCAAGAAGACCAGATTCTCATCAATTATATCACTCTCTATGGCCATGGAAATTGGCGAGCCCTCCCAAAGCAATCTGGTAAGTTTATATGTCCTTTTACTCAAAACCCATTAAAAAAAATCTAGCTTTTCTATGAACTTAGCCAAGAAATGAGAGGAAAATGCTTTCTAGCTCGATTTTTCTTCGTTTTCTTACGTGGGTTGGCTCGTTTTTTCATAATTTCTTATGGGTTTTAGCAGGATTGTTAAGGTGTGGAAAAAGTTGCAGGCTTCGGTGGATTAATTATCTAAGACCAGACATTAAACGAGGAAATTTAACCAAGGAAGAAGAGGAAACCATTATTAAGCTACATCGAGTGCTTGGAAACAGGTTCGTTTCTCTTTAAATCTAAAAGGGTTATCACTACTCGTAGAAAAACTAAACCTAACGTACCAATTCTGAAAGTGCTACGAAATACCTTTCAACAAGTTACTAATGAGTGAGACTACTAGTTATCGTAGACACGGCTATTTATCATTAACTCTCTGTCTTTCTAGTAGCTTTTCTTCTCTATTGTTTTTTCTTGGAGAGATAGATTCAAACCTACAAATGAAAGAAGGAAAAAAAAAAAAGTTTTCTTAGGTGTTAAGTTATATATTTTCATAGTGAAAAAATCATCGATTTAAGACAGAATATTAATGTCGGTACGAAAACAAATTATTGAACATAGGCGTTATTACGTAGTTGTCTCATAATAATTTAAAAGGTATGTTTTCTTCTAATAACTTTTTGATACAAATTTGTAACATGTTTTGTGCTCTCTCGTACAAACCGCAAAAAACCATCTTTCGCTTGGTTTTTGTCTCGTTCATGCTTTCTCAAGTACAAAACGATTAAAATTGTCAATCACATTATTCTAACCTCTTATGCAAGTTCTCGTGAGTCGGGTGTTCTCGAAAATATATATAGTTTAACCATAGCTAATTAATTGCTTCACATCGATTATTGCATAGACTTTAATCCATTTTATGTCATCATGTGACACTAACGAACAAAACTGACCACATTGAACTTAACAAACAAAACATGTTTTTTGTTTTCAACCAATAATTAAGAATCTACGTTCTTGGTTTTTCCAATAAACTAACATTTTATATGTCCTCTTGATCATAGATGGTCGGCAATTGCAGCAAGGTTACCAGGAAGAACCGACAACGAGATAAAAAACGTGTGGAATACCCATTTGAAGAAAAGACAAAATTACGCTGCCGTAAACCGGCCAATCGGCGGCGGCCATGAAGAACCTGCAGCACAACCCTTCAAATTTACGACCTTTCACTCCATGCAGAACCCTGCTTCGGCTTCTTCGCCGCCCCATTGCTCCAGTGAAAGCTCCTCCATTGTCTTGCCGGAGAACGGTGACTTGTCGACGAATAATCTGCCGGAGGCCGACGAAAACTTCTGGGTGGAAGTTTTGGCCGGCGATCAAATCGCCACCGTGGGGAGCCAACAGGGATTTGGAGGTGAAAGCGAAGGACAATTT

mRNA sequence

ATGGTGAGAGCTCCATGCTGTGAGAAAATGGGGCTCAAGAAAGGCCCTTGGACCCCTCAAGAAGACCAGATTCTCATCAATTATATCACTCTCTATGGCCATGGAAATTGGCGAGCCCTCCCAAAGCAATCTGCAAGGTTACCAGGAAGAACCGACAACGAGATAAAAAACGTGTGGAATACCCATTTGAAGAAAAGACAAAATTACGCTGCCGTAAACCGGCCAATCGGCGGCGGCCATGAAGAACCTGCAGCACAACCCTTCAAATTTACGACCTTTCACTCCATGCAGAACCCTGCTTCGGCTTCTTCGCCGCCCCATTGCTCCAGTGAAAGCTCCTCCATTGTCTTGCCGGAGAACGGTGACTTGTCGACGAATAATCTGCCGGAGGCCGACGAAAACTTCTGGGTGGAAGTTTTGGCCGGCGATCAAATCGCCACCGTGGGGAGCCAACAGGGATTTGGAGGTGAAAGCGAAGGACAATTT

Coding sequence (CDS)

ATGGTGAGAGCTCCATGCTGTGAGAAAATGGGGCTCAAGAAAGGCCCTTGGACCCCTCAAGAAGACCAGATTCTCATCAATTATATCACTCTCTATGGCCATGGAAATTGGCGAGCCCTCCCAAAGCAATCTGCAAGGTTACCAGGAAGAACCGACAACGAGATAAAAAACGTGTGGAATACCCATTTGAAGAAAAGACAAAATTACGCTGCCGTAAACCGGCCAATCGGCGGCGGCCATGAAGAACCTGCAGCACAACCCTTCAAATTTACGACCTTTCACTCCATGCAGAACCCTGCTTCGGCTTCTTCGCCGCCCCATTGCTCCAGTGAAAGCTCCTCCATTGTCTTGCCGGAGAACGGTGACTTGTCGACGAATAATCTGCCGGAGGCCGACGAAAACTTCTGGGTGGAAGTTTTGGCCGGCGATCAAATCGCCACCGTGGGGAGCCAACAGGGATTTGGAGGTGAAAGCGAAGGACAATTT

Protein sequence

MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSARLPGRTDNEIKNVWNTHLKKRQNYAAVNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPEADENFWVEVLAGDQIATVGSQQGFGGESEGQF

Homology

[Close]

BLAST of Carg16877 vs. NCBI nr
Match: XP_022963936.1 (transcription factor MYB4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 315.1 bits (806), Expect = 1.4e-82
Identity = 161/212 (75.94%), Postives = 162/212 (76.42%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSGLLRCGKSCRLRWINY 60

Query: 61  ---------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                            ARLPGRTDNEIKNVWNTHLKKRQNYAA
Sbjct: 61  LRPDIKRGNLTKEEEETIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYAA 120

Query: 121 VNRPI-GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE 163
           VNRPI GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE
Sbjct: 121 VNRPICGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE 180

[Close]

BLAST of Carg16877 vs. NCBI nr
Match: XP_022963935.1 (transcription factor MYB4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 314.7 bits (805), Expect = 1.8e-82
Identity = 161/213 (75.59%), Postives = 162/213 (76.06%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSAGLLRCGKSCRLRWIN 60

Query: 61  ----------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYA 120
                                             ARLPGRTDNEIKNVWNTHLKKRQNYA
Sbjct: 61  YLRPDIKRGNLTKEEEETIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYA 120

Query: 121 AVNRPI-GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLP 163
           AVNRPI GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLP
Sbjct: 121 AVNRPICGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLP 180

[Close]

BLAST of Carg16877 vs. NCBI nr
Match: XP_023553737.1 (transcription factor MYB4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.5 bits (763), Expect = 1.4e-77
Identity = 152/211 (72.04%), Postives = 154/211 (72.99%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSGLLRCGKSCRLRWINY 60

Query: 61  ---------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                            ARLPGRTDNEIKNVWNTHLKKRQNY A
Sbjct: 61  LRPDIKRGNLTKEEEETIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYTA 120

Query: 121 VNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPEA 163
           +NR I GG EEPA QPFKFTTFHSMQNPAS SSPPHCS ESSSIVLPENGDLSTNNLPEA
Sbjct: 121 MNRRICGGDEEPATQPFKFTTFHSMQNPASTSSPPHCSRESSSIVLPENGDLSTNNLPEA 180

[Close]

BLAST of Carg16877 vs. NCBI nr
Match: XP_023553736.1 (transcription factor MYB4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.1 bits (762), Expect = 1.8e-77
Identity = 152/212 (71.70%), Postives = 154/212 (72.64%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSAGLLRCGKSCRLRWIN 60

Query: 61  ----------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYA 120
                                             ARLPGRTDNEIKNVWNTHLKKRQNY 
Sbjct: 61  YLRPDIKRGNLTKEEEETIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYT 120

Query: 121 AVNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE 163
           A+NR I GG EEPA QPFKFTTFHSMQNPAS SSPPHCS ESSSIVLPENGDLSTNNLPE
Sbjct: 121 AMNRRICGGDEEPATQPFKFTTFHSMQNPASTSSPPHCSRESSSIVLPENGDLSTNNLPE 180

[Close]

BLAST of Carg16877 vs. NCBI nr
Match: XP_022967674.1 (transcription factor MYB4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 287.0 bits (733), Expect = 4.1e-74
Identity = 148/211 (70.14%), Postives = 156/211 (73.93%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSGLLRCGKSCRLRWINY 60

Query: 61  ---------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                            ARLPGRTDNEIKNVWNTHLKKRQNYAA
Sbjct: 61  LRPDIKRGNLTKEEEDTIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYAA 120

Query: 121 VNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPEA 163
           +N+PI GG +E AAQPFK TTFHSMQNPASASSP +CS+ESSSIVLPENGDLSTNNLPEA
Sbjct: 121 LNQPICGGDQESAAQPFKLTTFHSMQNPASASSPLYCSTESSSIVLPENGDLSTNNLPEA 180

[Close]

BLAST of Carg16877 vs. TAIR10
Match: AT2G31180.1 (myb domain protein 14)

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-24
Identity = 70/197 (35.53%), Postives = 96/197 (48.73%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMG+K+GPWTP+EDQILINYI LYGH NWRALPK                  
Sbjct: 1   MGRAPCCEKMGVKRGPWTPEEDQILINYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                           +A+LPGRTDNEIKNVW+THLKKR     
Sbjct: 61  LRPDIKRGNFTPQEEQTIINLHESLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKR----- 120

Query: 121 VNRPIGGGHEEPAAQPFKFTTFHSMQNPA--SASSPPHCSSESSSIVLPENGD--LSTNN 144
           +++ +  G +         TT     +    +AS     +S ++  +  +N D  +S  +
Sbjct: 121 LSKNLNNGGDTKDVNGINETTNEDKGSVIVDTASLQQFSNSITTFDISNDNKDDIMSYED 180

[Close]

BLAST of Carg16877 vs. TAIR10
Match: AT3G23250.1 (myb domain protein 15)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-23
Identity = 53/115 (46.09%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMGLK+GPWTP+EDQIL+++I  +GH NWRALPKQ                 
Sbjct: 1   MGRAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPKQAGLLRCGKSCRLRWMNY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKR 67
                                           +A+LPGRTDNEIKNVW+THLKKR
Sbjct: 61  LKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKR 115

[Close]

BLAST of Carg16877 vs. TAIR10
Match: AT1G06180.1 (myb domain protein 13)

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-22
Identity = 52/115 (45.22%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M R PCCEK+GLKKGPW+ +ED+ILINYI+L+GH NWRALPK                  
Sbjct: 1   MGRRPCCEKIGLKKGPWSAEEDRILINYISLHGHPNWRALPKLAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKR 67
                                           +A+LPGRTDNEIKNVW+THLKKR
Sbjct: 61  LRPDIKRGNFTPHEEDTIISLHQLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKR 115

[Close]

BLAST of Carg16877 vs. TAIR10
Match: AT4G05100.1 (myb domain protein 74)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-20
Identity = 50/116 (43.10%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 1   MVRAPCCEKM-GLKKGPWTPQEDQILINYITLYGHGNWRALPKQ---------------- 60
           M R+PCCEK  GLKKGPWTP+EDQ LI+YI ++G+GNWR LPK                 
Sbjct: 1   MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTN 60

Query: 61  ---------------------------------SARLPGRTDNEIKNVWNTHLKKR 67
                                            +ARLPGRTDNEIKN WNTH++KR
Sbjct: 61  YLRPDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKR 116

[Close]

BLAST of Carg16877 vs. TAIR10
Match: AT3G02940.1 (myb domain protein 107)

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-20
Identity = 47/115 (40.87%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M R+PCC++ GLKKGPWTP+EDQ LIN+I  +GHG+WRALPKQ                 
Sbjct: 1   MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKR 67
                                           +  LPGRTDNEIKN WNTH++K+
Sbjct: 61  LRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKK 115

[Close]

BLAST of Carg16877 vs. Swiss-Prot
Match: sp|Q7XBH4|MYB4_ORYSJ (Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-23
Identity = 58/129 (44.96%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMGLKKGPWTP+ED++L+ +I  +GHGNWRALPKQ                 
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKRQNYAA 81
                                           +ARLPGRTDNEIKNVW+THLKKR     
Sbjct: 61  LRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKR----- 120

[Close]

BLAST of Carg16877 vs. Swiss-Prot
Match: sp|Q9SJX8|MYB14_ARATH (Transcription factor MYB14 OS=Arabidopsis thaliana OX=3702 GN=MYB14 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.5e-23
Identity = 70/197 (35.53%), Postives = 96/197 (48.73%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMG+K+GPWTP+EDQILINYI LYGH NWRALPK                  
Sbjct: 1   MGRAPCCEKMGVKRGPWTPEEDQILINYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                           +A+LPGRTDNEIKNVW+THLKKR     
Sbjct: 61  LRPDIKRGNFTPQEEQTIINLHESLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKR----- 120

Query: 121 VNRPIGGGHEEPAAQPFKFTTFHSMQNPA--SASSPPHCSSESSSIVLPENGD--LSTNN 144
           +++ +  G +         TT     +    +AS     +S ++  +  +N D  +S  +
Sbjct: 121 LSKNLNNGGDTKDVNGINETTNEDKGSVIVDTASLQQFSNSITTFDISNDNKDDIMSYED 180

[Close]

BLAST of Carg16877 vs. Swiss-Prot
Match: sp|Q9LTC4|MYB15_ARATH (Transcription factor MYB15 OS=Arabidopsis thaliana OX=3702 GN=MYB15 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-22
Identity = 53/115 (46.09%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMGLK+GPWTP+EDQIL+++I  +GH NWRALPKQ                 
Sbjct: 1   MGRAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPKQAGLLRCGKSCRLRWMNY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKR 67
                                           +A+LPGRTDNEIKNVW+THLKKR
Sbjct: 61  LKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKR 115

[Close]

BLAST of Carg16877 vs. Swiss-Prot
Match: sp|Q9LNC9|MYB13_ARATH (Transcription factor MYB13 OS=Arabidopsis thaliana OX=3702 GN=MYB13 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.0e-21
Identity = 52/115 (45.22%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M R PCCEK+GLKKGPW+ +ED+ILINYI+L+GH NWRALPK                  
Sbjct: 1   MGRRPCCEKIGLKKGPWSAEEDRILINYISLHGHPNWRALPKLAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKR 67
                                           +A+LPGRTDNEIKNVW+THLKKR
Sbjct: 61  LRPDIKRGNFTPHEEDTIISLHQLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKR 115

[Close]

BLAST of Carg16877 vs. Swiss-Prot
Match: sp|Q6K1S6|MYB30_ORYSJ (Transcription factor MYB30 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB30 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-20
Identity = 51/115 (44.35%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMGLK+GPWT +ED+IL+ +I  +GH NWRALP+Q                 
Sbjct: 1   MGRAPCCEKMGLKRGPWTAEEDRILVAHIERHGHSNWRALPRQAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKR 67
                                           +ARLPGRTDNEIKNVW+THLKKR
Sbjct: 61  LRPDIKRGNFTREEEDAIIHLHDLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKR 115

[Close]

BLAST of Carg16877 vs. TrEMBL
Match: tr|A0A1S3BI17|A0A1S3BI17_CUCME (myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103489876 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 5.3e-54
Identity = 123/218 (56.42%), Postives = 136/218 (62.39%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           MVRAPCCEKMGLKKGPWTP+EDQILINYI LYGHGNWRALPKQ                 
Sbjct: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYINLYGHGNWRALPKQAGLLRCGKSCRLRWTNY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKK--RQNY 120
                                           +ARLPGRTDNEIKNVW+THLKK  RQ Y
Sbjct: 61  LRPDIKRGNFTPEEEETIINLHEMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLRQKY 120

Query: 121 AAV---NRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTN 163
           A     N P     +  A +PFK+TT+ SM + A A SPPHCSSESSS +  ENG+  TN
Sbjct: 121 ATPQLRNYPAMNEEQSIAQEPFKYTTYESMGSSALAFSPPHCSSESSSNITGENGEWWTN 180

[Close]

BLAST of Carg16877 vs. TrEMBL
Match: tr|A0A0A0L7F4|A0A0A0L7F4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G386830 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 88/161 (54.66%), Postives = 100/161 (62.11%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSARLPGRTDNEIKNVWN 60
           MVRAPCCEKMGLKKGPWTP+EDQ LINYI LYGHGNWRALPKQ+  L  R     +  W 
Sbjct: 1   MVRAPCCEKMGLKKGPWTPEEDQTLINYINLYGHGNWRALPKQAGLL--RCGKSCRLRWT 60

Query: 61  THLK---KRQNYAAVNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVL 120
            +L+   KR N+ A         EE           H M            +SESSSI+ 
Sbjct: 61  NYLRPDIKRGNFTA--------EEEET-----IINLHQMLG----------NSESSSIIT 120

Query: 121 PENGDLSTNNLPEADENFWVEVLAGDQIATVGSQQGFGGES 159
            ENG+  TNNLPEADENFW EVL  DQ+ATVG+QQGF GE+
Sbjct: 121 AENGESWTNNLPEADENFWREVLGSDQMATVGNQQGFEGET 136

[Close]

BLAST of Carg16877 vs. TrEMBL
Match: tr|A0A061DQS7|A0A061DQS7_THECC (Myb domain protein 13, putative OS=Theobroma cacao OX=3641 GN=TCM_004046 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.3e-31
Identity = 90/223 (40.36%), Postives = 110/223 (49.33%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           MVRAPCCEKMGLKKGPWTP+EDQILINYI LYGHGNWRALPKQ                 
Sbjct: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYIKLYGHGNWRALPKQAGLLRCGKSCRLRWTNY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKR--QNY 120
                                           +ARLPGRTDNEIKNVW+THLKKR  QN+
Sbjct: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQNH 120

Query: 121 AAVNRPIGGGHE----EPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGD--- 163
            + +    G       +   +P  F +  +        SPP  SSE S++   EN     
Sbjct: 121 GSNDNKRQGIDSSQDIKKEQEPVNFLSPVTDSPGCRPVSPPESSSEVSTVTTSENNSNMC 180

[Close]

BLAST of Carg16877 vs. TrEMBL
Match: tr|B9H8L9|B9H8L9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G224100v3 PE=4 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 2.4e-30
Identity = 92/234 (39.32%), Postives = 112/234 (47.86%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           MVRAPCCEKMGLKKGPWT +EDQILINYI L+GHGNWRALPKQ                 
Sbjct: 1   MVRAPCCEKMGLKKGPWTAEEDQILINYIQLHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                           +ARLPGRTDNEIKNVW+THLKKR     
Sbjct: 61  LRPDIKRGNFSREEEDTIIKLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLEKNH 120

Query: 121 VNRPIGGGHEEPAAQPFKFTTFHSM---QNPASAS---------SPPHCSSESSSIVLPE 163
           V   I G   + +    +  T   +    N A+ S         SP  CSS++SS++   
Sbjct: 121 VTPEIKGRSVDISRFDHELNTDQELLDSSNLAAGSDQTEEHRPISPQQCSSDTSSLI--- 180

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BLAST of Carg16877 vs. TrEMBL
Match: tr|A0A2I4F6P9|A0A2I4F6P9_9ROSI (myb-related protein Myb4-like OS=Juglans regia OX=51240 GN=LOC108996040 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 91/231 (39.39%), Postives = 107/231 (46.32%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           MVRAPCCEKMGLKKGPWT +EDQILINYI LYGHGNWRALPK                  
Sbjct: 1   MVRAPCCEKMGLKKGPWTSEEDQILINYIQLYGHGNWRALPKLAGLLRCGKSCRLRWTNY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKR----Q 120
                                           +ARLPGRTDNEIKNVW+THLKK+    Q
Sbjct: 61  LRPDIKRGNFSREEEDAIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKLKQHQ 120

Query: 121 NYAAVNR------PIGGGHEEPAAQPFKFTTFHSMQNPASAS------SPPHCSSESSSI 162
           +  A ++             + A    +   F S  +P S S      SP  CSSE S++
Sbjct: 121 DIPASDKRNDTKISTAPKCYQEAKTEVESMNFPSPNHPTSESPEHPPVSPQECSSEMSTV 180

The following BLAST results are available for this feature:

BLAST of Carg16877 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963936.1	1.4e-82	75.94	transcription factor MYB4-like isoform X2 [Cucurbita moschata]	[more]
XP_022963935.1	1.8e-82	75.59	transcription factor MYB4-like isoform X1 [Cucurbita moschata]	[more]
XP_023553737.1	1.4e-77	72.04	transcription factor MYB4-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023553736.1	1.8e-77	71.70	transcription factor MYB4-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022967674.1	4.1e-74	70.14	transcription factor MYB4-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg16877 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31180.1	3.6e-24	35.53	myb domain protein 14	[more]
AT3G23250.1	1.8e-23	46.09	myb domain protein 15	[more]
AT1G06180.1	4.4e-22	45.22	myb domain protein 13	[more]
AT4G05100.1	1.4e-20	43.10	myb domain protein 74	[more]
AT3G02940.1	2.4e-20	40.87	myb domain protein 107	[more]

BLAST of Carg16877 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7XBH4\|MYB4_ORYSJ	1.0e-23	44.96	Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 ...	[more]
sp\|Q9SJX8\|MYB14_ARATH	6.5e-23	35.53	Transcription factor MYB14 OS=Arabidopsis thaliana OX=3702 GN=MYB14 PE=2 SV=1	[more]
sp\|Q9LTC4\|MYB15_ARATH	3.2e-22	46.09	Transcription factor MYB15 OS=Arabidopsis thaliana OX=3702 GN=MYB15 PE=1 SV=1	[more]
sp\|Q9LNC9\|MYB13_ARATH	8.0e-21	45.22	Transcription factor MYB13 OS=Arabidopsis thaliana OX=3702 GN=MYB13 PE=2 SV=1	[more]
sp\|Q6K1S6\|MYB30_ORYSJ	1.8e-20	44.35	Transcription factor MYB30 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB30 PE=...	[more]

BLAST of Carg16877 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BI17\|A0A1S3BI17_CUCME	5.3e-54	56.42	myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103489876 PE=4 SV=1	[more]
tr\|A0A0A0L7F4\|A0A0A0L7F4_CUCSA	1.1e-35	54.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G386830 PE=4 SV=1	[more]
tr\|A0A061DQS7\|A0A061DQS7_THECC	6.3e-31	40.36	Myb domain protein 13, putative OS=Theobroma cacao OX=3641 GN=TCM_004046 PE=4 SV...	[more]
tr\|B9H8L9\|B9H8L9_POPTR	2.4e-30	39.32	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G224100v3 PE=...	[more]
tr\|A0A2I4F6P9\|A0A2I4F6P9_9ROSI	3.1e-30	39.39	myb-related protein Myb4-like OS=Juglans regia OX=51240 GN=LOC108996040 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16877-RA	Carg16877-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 13..65 e-value: 9.1E-12 score: 55.1
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..63 e-value: 1.0E-12 score: 47.9
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..63 e-value: 6.25037E-13 score: 58.741
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 16..66 e-value: 8.0E-18 score: 66.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..118
None	No IPR available	PANTHER	PTHR10641:SF954	SUBFAMILY NOT NAMED	coord: 45..132
None	No IPR available	PANTHER	PTHR10641:SF954	SUBFAMILY NOT NAMED	coord: 1..45
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 45..132
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 1..45
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 9..67 score: 19.813
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 8..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16877	Csa3G386830	Cucumber (Chinese Long) v2	carcuB0769
Carg16877	MELO3C012890	Melon (DHL92) v3.5.1	carmeB0744
Carg16877	ClCG07G001040	Watermelon (Charleston Gray)	carwcgB0730
Carg16877	CSPI03G11960	Wild cucumber (PI 183967)	carcpiB0787
Carg16877	Cucsa.255390	Cucumber (Gy14) v1	carcgyB0847
Carg16877	CmaCh19G000880	Cucurbita maxima (Rimu)	carcmaB1049
Carg16877	CmoCh19G001010	Cucurbita moschata (Rifu)	carcmoB1021
Carg16877	Lsi05G010160	Bottle gourd (USVL1VR-Ls)	carlsiB689
Carg16877	CsGy3G021630	Cucumber (Gy14) v2	carcgybB0747
Carg16877	Cla97C05G085080	Watermelon (97103) v2	carwmbB0786
Carg16877	Cla97C06G116660	Watermelon (97103) v2	carwmbB0787
Carg16877	Cla97C07G129310	Watermelon (97103) v2	carwmbB0788
Carg16877	Bhi01G000525	Wax gourd	carwgoB0886
Carg16877	Bhi05G000155	Wax gourd	carwgoB0888

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16877	Carg10086	Silver-seed gourd	carcarB262
Carg16877	Carg16561	Silver-seed gourd	carcarB272
Carg16877	Carg08966	Silver-seed gourd	carcarB599

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16877	Silver-seed gourd	carcarB600
Carg16877	Silver-seed gourd	carcarB601
Carg16877	Cucumber (Gy14) v2	carcgybB0745
Carg16877	Cucumber (Gy14) v1	carcgyB0841
Carg16877	Cucumber (Gy14) v1	carcgyB0849
Carg16877	Cucurbita maxima (Rimu)	carcmaB1052
Carg16877	Cucurbita maxima (Rimu)	carcmaB1051
Carg16877	Cucurbita moschata (Rifu)	carcmoB1023
Carg16877	Cucurbita moschata (Rifu)	carcmoB1025
Carg16877	Cucurbita pepo (Zucchini)	carcpeB1057
Carg16877	Cucurbita pepo (Zucchini)	carcpeB1058
Carg16877	Cucurbita pepo (Zucchini)	carcpeB1060
Carg16877	Cucurbita pepo (Zucchini)	carcpeB1062
Carg16877	Wild cucumber (PI 183967)	carcpiB0783
Carg16877	Wild cucumber (PI 183967)	carcpiB0786
Carg16877	Cucumber (Chinese Long) v2	carcuB0766
Carg16877	Cucumber (Chinese Long) v3	carcucB0786
Carg16877	Cucumber (Chinese Long) v3	carcucB0789
Carg16877	Cucumber (Chinese Long) v3	carcucB0790
Carg16877	Bottle gourd (USVL1VR-Ls)	carlsiB687
Carg16877	Bottle gourd (USVL1VR-Ls)	carlsiB690
Carg16877	Melon (DHL92) v3.5.1	carmeB0749
Carg16877	Melon (DHL92) v3.6.1	carmedB0757
Carg16877	Melon (DHL92) v3.6.1	carmedB0760
Carg16877	Melon (DHL92) v3.6.1	carmedB0763
Carg16877	Watermelon (Charleston Gray)	carwcgB0728
Carg16877	Watermelon (97103) v1	carwmB0750
Carg16877	Watermelon (97103) v1	carwmB0752
Carg16877	Watermelon (97103) v1	carwmB0753