MELO3C006038 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006038
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	WRKY transcription factor 6
Location	chr6 : 711358 .. 711872 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCGACTTTTATTCCCGGCGAGGGCTTGACTGCAGCAGCAGTGTCGTCGCCGGCGTCGGACACGGCCTGGGATTGGAGCGGCTACGACGGCGGACTACAGAGGGTTCAGTCGTCGGAGCAATCGGCGGTGACAGAGATAATTTCGGCGACAACTTCAGTGACAAATTCGCCGATTTGTATTGGGGAGTGGGATTTCTCGCTTGACAATATTGATTTTGACCAGAATTTCCCCTTTGACTCTCTAGATTTCATCTCTTGATTTTTTTTTTTTCTGGTTATATTATCATTAACTTTTTTCCACGTAGGATTTGAGATGTTTTTGTTTCTTTAGATATTCTTCCATTGTGTAAGAATTATTTTGAGAAGTGTCTGTGGGGATTAATCTGTGTAGTTTAAAGTTTTATTGTTATTTAATGATCATCTAGTATTGTAGTTATTGAATTTTTTTCTTGTCTAAAGAAATGTAATGATCTTTAAGCTAATGAATAATATTTTTTCTAGTGATATAAA

mRNA sequence

ATGGACCCGACTTTTATTCCCGGCGAGGGCTTGACTGCAGCAGCAGTGTCGTCGCCGGCGTCGGACACGGCCTGGGATTGGAGCGGCTACGACGGCGGACTACAGAGGGTTCAGTCGTCGGAGCAATCGGCGGTGACAGAGATAATTTCGGCGACAACTTCAGTGACAAATTCGCCGATTTGTATTGGGGAGTGGGATTTCTCGCTTGACAATATTGATTTTGACCAGAATTTCCCCTTTGACTCTCTAGATTTCATCTCTTGATTTTTTTTTTTTCTGGTTATATTATCATTAACTTTTTTCCACGTAGGATTTGAGATGTTTTTGTTTCTTTAGATATTCTTCCATTGTGTAAGAATTATTTTGAGAAGTGTCTGTGGGGATTAATCTGTGTAGTTTAAAGTTTTATTGTTATTTAATGATCATCTAGTATTGTAGTTATTGAATTTTTTTCTTGTCTAAAGAAATGTAATGATCTTTAAGCTAATGAATAATATTTTTTCTAGTGATATAAA

Coding sequence (CDS)

ATGGACCCGACTTTTATTCCCGGCGAGGGCTTGACTGCAGCAGCAGTGTCGTCGCCGGCGTCGGACACGGCCTGGGATTGGAGCGGCTACGACGGCGGACTACAGAGGGTTCAGTCGTCGGAGCAATCGGCGGTGACAGAGATAATTTCGGCGACAACTTCAGTGACAAATTCGCCGATTTGTATTGGGGAGTGGGATTTCTCGCTTGACAATATTGATTTTGACCAGAATTTCCCCTTTGACTCTCTAGATTTCATCTCTTGA

Protein sequence

MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICIGEWDFSLDNIDFDQNFPFDSLDFIS*

Homology

[Close]

BLAST of MELO3C006038 vs. TrEMBL
Match: A0A0A0L772_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119700 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.6e-36
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1


Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           M+PTFIPGE LT AAVSSPA+DTAWDWSGYDGG+QRVQSSEQSAVTEI+SATTSVTNSPI
Sbjct: 252 MNPTFIPGEDLT-AAVSSPATDTAWDWSGYDGGVQRVQSSEQSAVTEIVSATTSVTNSPI 311

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 88
             G+WDFSLDNIDFD NFPFDSLDFIS
Sbjct: 312 YNGDWDFSLDNIDFDHNFPFDSLDFIS 337

[Close]

BLAST of MELO3C006038 vs. TrEMBL
Match: B9I8V9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09190g PE=4 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-09
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 3   PTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICI 62
           PTFI      A + S+  S +    + +  G Q VQ+ E    TEIISA TSVTNSP  I
Sbjct: 287 PTFIS----PATSESNYFSMSPCHMNSFGIGYQNVQTPESELTTEIISAPTSVTNSP--I 346

Query: 63  GEWDFSLDNIDFDQNFPFDSLDFIS 88
           G++D S+DN+DFD  FPFD+ DF +
Sbjct: 347 GDFDISIDNVDFDTTFPFDNPDFFA 365

[Close]

BLAST of MELO3C006038 vs. TrEMBL
Match: C9DHZ5_9ROSI (WRKY transcription factor 6 OS=(Populus tomentosa x Populus bolleana) x Populus tomentosa PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-08
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1


Query: 4   TFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICIG 63
           +F P     A + S+  S +    + +  G   VQ+ E    TEIISA TSVTNSP  IG
Sbjct: 288 SFSPAFISPATSESNYFSMSPCHMNSFGIGYPNVQTPESELTTEIISAPTSVTNSP--IG 347

Query: 64  EWDFSLDNIDFDQNFPFDSLDFIS 88
           ++D S+DN+DFD  FPFD+ DF +
Sbjct: 348 DFDISIDNVDFDTTFPFDNPDFFA 369

[Close]

BLAST of MELO3C006038 vs. TrEMBL
Match: W9RQ80_9ROSA (Putative WRKY transcription factor 41 OS=Morus notabilis GN=L484_012050 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1


Query: 33  GLQRVQSSEQSAVTEIISATTSVTNSPICIGEWDFSLDNIDFDQNFPFDSLDFIS 88
           GLQ V  SE S +TEIISA TS TNSPI   + DFSLD++D D NFPFD+  F S
Sbjct: 297 GLQYVHRSE-SDLTEIISANTSATNSPI--PDMDFSLDSVDIDPNFPFDTPGFFS 348

[Close]

BLAST of MELO3C006038 vs. NCBI nr
Match: gi|659075009|ref|XP_008437915.1| (PREDICTED: probable WRKY transcription factor 46 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 6.8e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI
Sbjct: 254 MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 313

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 88
           CIGEWDFSLDNIDFDQNFPFDSLDFIS
Sbjct: 314 CIGEWDFSLDNIDFDQNFPFDSLDFIS 340

[Close]

BLAST of MELO3C006038 vs. NCBI nr
Match: gi|778676947|ref|XP_011650695.1| (PREDICTED: probable WRKY transcription factor 46 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 8.0e-36
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1


Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           M+PTFIPGE LT AAVSSPA+DTAWDWSGYDGG+QRVQSSEQSAVTEI+SATTSVTNSPI
Sbjct: 252 MNPTFIPGEDLT-AAVSSPATDTAWDWSGYDGGVQRVQSSEQSAVTEIVSATTSVTNSPI 311

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 88
             G+WDFSLDNIDFD NFPFDSLDFIS
Sbjct: 312 YNGDWDFSLDNIDFDHNFPFDSLDFIS 337

[Close]

BLAST of MELO3C006038 vs. NCBI nr
Match: gi|566203346|ref|XP_002320852.2| (hypothetical protein POPTR_0014s09190g [Populus trichocarpa])

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 3   PTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICI 62
           PTFI      A + S+  S +    + +  G Q VQ+ E    TEIISA TSVTNSP  I
Sbjct: 287 PTFIS----PATSESNYFSMSPCHMNSFGIGYQNVQTPESELTTEIISAPTSVTNSP--I 346

Query: 63  GEWDFSLDNIDFDQNFPFDSLDFIS 88
           G++D S+DN+DFD  FPFD+ DF +
Sbjct: 347 GDFDISIDNVDFDTTFPFDNPDFFA 365

[Close]

BLAST of MELO3C006038 vs. NCBI nr
Match: gi|743790041|ref|XP_011037871.1| (PREDICTED: probable WRKY transcription factor 46 [Populus euphratica])

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 3   PTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICI 62
           PTFI      A + S+  S +    + +  G Q VQ+ E    TEI+SA TSVTNSP  I
Sbjct: 285 PTFIS----PATSESNYFSMSPCHMNSFGIGYQNVQTPESELTTEILSAPTSVTNSP--I 344

Query: 63  GEWDFSLDNIDFDQNFPFDSLDFIS 88
           G++D ++DN+DFD  FPFD+ DF +
Sbjct: 345 GDFDIAIDNVDFDTTFPFDNPDFFA 363

[Close]

BLAST of MELO3C006038 vs. NCBI nr
Match: gi|259121377|gb|ACV92008.1| (WRKY transcription factor 6 [(Populus tomentosa x Populus bolleana) x Populus tomentosa])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-08
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1


Query: 4   TFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICIG 63
           +F P     A + S+  S +    + +  G   VQ+ E    TEIISA TSVTNSP  IG
Sbjct: 288 SFSPAFISPATSESNYFSMSPCHMNSFGIGYPNVQTPESELTTEIISAPTSVTNSP--IG 347

Query: 64  EWDFSLDNIDFDQNFPFDSLDFIS 88
           ++D S+DN+DFD  FPFD+ DF +
Sbjct: 348 DFDISIDNVDFDTTFPFDNPDFFA 369

The following BLAST results are available for this feature:

BLAST of MELO3C006038 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L772_CUCSA	5.6e-36	88.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119700 PE=4 SV=1	[more]
B9I8V9_POPTR	3.4e-09	47.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09190g PE=4 SV=2	[more]
C9DHZ5_9ROSI	3.8e-08	44.05	WRKY transcription factor 6 OS=(Populus tomentosa x Populus bolleana) x Populus ...	[more]
W9RQ80_9ROSA	2.7e-06	61.82	Putative WRKY transcription factor 41 OS=Morus notabilis GN=L484_012050 PE=4 SV=...	[more]

BLAST of MELO3C006038 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075009\|ref\|XP_008437915.1\|	6.8e-43	100.00	PREDICTED: probable WRKY transcription factor 46 [Cucumis melo]	[more]
gi\|778676947\|ref\|XP_011650695.1\|	8.0e-36	88.51	PREDICTED: probable WRKY transcription factor 46 [Cucumis sativus]	[more]
gi\|566203346\|ref\|XP_002320852.2\|	4.9e-09	47.06	hypothetical protein POPTR_0014s09190g [Populus trichocarpa]	[more]
gi\|743790041\|ref\|XP_011037871.1\|	1.9e-08	44.71	PREDICTED: probable WRKY transcription factor 46 [Populus euphratica]	[more]
gi\|259121377\|gb\|ACV92008.1\|	5.4e-08	44.05	WRKY transcription factor 6 [(Populus tomentosa x Populus bolleana) x Populus to...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013783	Ig-like_fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU56959	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006038T1	MELO3C006038T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU56959	MU56959	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013783	Immunoglobulin-like fold	GENE3D	G3DSA:2.60.40.10		coord: 20..64 score: 7.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006038	CmaCh06G010490	Cucurbita maxima (Rimu)	cmameB770

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006038	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006038	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006038	Wild cucumber (PI 183967)	cpimeB230
MELO3C006038	Wild cucumber (PI 183967)	cpimeB291
MELO3C006038	Wild cucumber (PI 183967)	cpimeB399
MELO3C006038	Cucumber (Chinese Long) v2	cumeB297
MELO3C006038	Cucumber (Chinese Long) v2	cumeB236
MELO3C006038	Cucumber (Chinese Long) v2	cumeB402
MELO3C006038	Watermelon (Charleston Gray)	mewcgB420
MELO3C006038	Watermelon (Charleston Gray)	mewcgB427
MELO3C006038	Watermelon (Charleston Gray)	mewcgB430
MELO3C006038	Watermelon (97103) v1	mewmB478
MELO3C006038	Watermelon (97103) v1	mewmB461
MELO3C006038	Watermelon (97103) v1	mewmB466
MELO3C006038	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006038	Cucurbita pepo (Zucchini)	cpemeB698
MELO3C006038	Cucurbita pepo (Zucchini)	cpemeB815
MELO3C006038	Bottle gourd (USVL1VR-Ls)	lsimeB031
MELO3C006038	Bottle gourd (USVL1VR-Ls)	lsimeB378
MELO3C006038	Cucumber (Gy14) v2	cgybmeB200
MELO3C006038	Cucumber (Gy14) v2	cgybmeB252
MELO3C006038	Cucumber (Gy14) v2	cgybmeB349
MELO3C006038	Silver-seed gourd	carmeB0222
MELO3C006038	Silver-seed gourd	carmeB0968
MELO3C006038	Cucumber (Chinese Long) v3	cucmeB236
MELO3C006038	Cucumber (Chinese Long) v3	cucmeB297
MELO3C006038	Cucumber (Chinese Long) v3	cucmeB411
MELO3C006038	Watermelon (97103) v2	mewmbB421
MELO3C006038	Watermelon (97103) v2	mewmbB434
MELO3C006038	Watermelon (97103) v2	mewmbB439
MELO3C006038	Wax gourd	mewgoB523
MELO3C006038	Wax gourd	mewgoB540
MELO3C006038	Wax gourd	mewgoB550
MELO3C006038	Melon (DHL92) v3.5.1	memeB018
MELO3C006038	Melon (DHL92) v3.5.1	memeB150
MELO3C006038	Melon (DHL92) v3.5.1	memeB151
MELO3C006038	Cucumber (Gy14) v1	cgymeB139
MELO3C006038	Cucumber (Gy14) v1	cgymeB439
MELO3C006038	Cucurbita maxima (Rimu)	cmameB004
MELO3C006038	Cucurbita maxima (Rimu)	cmameB242
MELO3C006038	Cucurbita maxima (Rimu)	cmameB766