MELO3C006038T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C006038T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionWRKY transcription factor 6
Locationchr6 : 711358 .. 711872 (+)
Sequence length515
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCCGACTTTTATTCCCGGCGAGGGCTTGACTGCAGCAGCAGTGTCGTCGCCGGCGTCGGACACGGCCTGGGATTGGAGCGGCTACGACGGCGGACTACAGAGGGTTCAGTCGTCGGAGCAATCGGCGGTGACAGAGATAATTTCGGCGACAACTTCAGTGACAAATTCGCCGATTTGTATTGGGGAGTGGGATTTCTCGCTTGACAATATTGATTTTGACCAGAATTTCCCCTTTGACTCTCTAGATTTCATCTCTTGATTTTTTTTTTTTCTGGTTATATTATCATTAACTTTTTTCCACGTAGGATTTGAGATGTTTTTGTTTCTTTAGATATTCTTCCATTGTGTAAGAATTATTTTGAGAAGTGTCTGTGGGGATTAATCTGTGTAGTTTAAAGTTTTATTGTTATTTAATGATCATCTAGTATTGTAGTTATTGAATTTTTTTCTTGTCTAAAGAAATGTAATGATCTTTAAGCTAATGAATAATATTTTTTCTAGTGATATAAA

mRNA sequence

ATGGACCCGACTTTTATTCCCGGCGAGGGCTTGACTGCAGCAGCAGTGTCGTCGCCGGCGTCGGACACGGCCTGGGATTGGAGCGGCTACGACGGCGGACTACAGAGGGTTCAGTCGTCGGAGCAATCGGCGGTGACAGAGATAATTTCGGCGACAACTTCAGTGACAAATTCGCCGATTTGTATTGGGGAGTGGGATTTCTCGCTTGACAATATTGATTTTGACCAGAATTTCCCCTTTGACTCTCTAGATTTCATCTCTTGATTTTTTTTTTTTCTGGTTATATTATCATTAACTTTTTTCCACGTAGGATTTGAGATGTTTTTGTTTCTTTAGATATTCTTCCATTGTGTAAGAATTATTTTGAGAAGTGTCTGTGGGGATTAATCTGTGTAGTTTAAAGTTTTATTGTTATTTAATGATCATCTAGTATTGTAGTTATTGAATTTTTTTCTTGTCTAAAGAAATGTAATGATCTTTAAGCTAATGAATAATATTTTTTCTAGTGATATAAA

Coding sequence (CDS)

ATGGACCCGACTTTTATTCCCGGCGAGGGCTTGACTGCAGCAGCAGTGTCGTCGCCGGCGTCGGACACGGCCTGGGATTGGAGCGGCTACGACGGCGGACTACAGAGGGTTCAGTCGTCGGAGCAATCGGCGGTGACAGAGATAATTTCGGCGACAACTTCAGTGACAAATTCGCCGATTTGTATTGGGGAGTGGGATTTCTCGCTTGACAATATTGATTTTGACCAGAATTTCCCCTTTGACTCTCTAGATTTCATCTCTTGA

Protein sequence

MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICIGEWDFSLDNIDFDQNFPFDSLDFIS*
Homology
[Close]
BLAST of MELO3C006038T1 vs. TrEMBL
Match: A0A0A0L772_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119700 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.6e-36
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1 

Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           M+PTFIPGE LT AAVSSPA+DTAWDWSGYDGG+QRVQSSEQSAVTEI+SATTSVTNSPI
Sbjct: 252 MNPTFIPGEDLT-AAVSSPATDTAWDWSGYDGGVQRVQSSEQSAVTEIVSATTSVTNSPI 311

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 88
             G+WDFSLDNIDFD NFPFDSLDFIS
Sbjct: 312 YNGDWDFSLDNIDFDHNFPFDSLDFIS 337

[Close]
BLAST of MELO3C006038T1 vs. TrEMBL
Match: B9I8V9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09190g PE=4 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-09
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1 

Query: 3   PTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICI 62
           PTFI      A + S+  S +    + +  G Q VQ+ E    TEIISA TSVTNSP  I
Sbjct: 287 PTFIS----PATSESNYFSMSPCHMNSFGIGYQNVQTPESELTTEIISAPTSVTNSP--I 346

Query: 63  GEWDFSLDNIDFDQNFPFDSLDFIS 88
           G++D S+DN+DFD  FPFD+ DF +
Sbjct: 347 GDFDISIDNVDFDTTFPFDNPDFFA 365

[Close]
BLAST of MELO3C006038T1 vs. TrEMBL
Match: C9DHZ5_9ROSI (WRKY transcription factor 6 OS=(Populus tomentosa x Populus bolleana) x Populus tomentosa PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-08
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 4   TFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICIG 63
           +F P     A + S+  S +    + +  G   VQ+ E    TEIISA TSVTNSP  IG
Sbjct: 288 SFSPAFISPATSESNYFSMSPCHMNSFGIGYPNVQTPESELTTEIISAPTSVTNSP--IG 347

Query: 64  EWDFSLDNIDFDQNFPFDSLDFIS 88
           ++D S+DN+DFD  FPFD+ DF +
Sbjct: 348 DFDISIDNVDFDTTFPFDNPDFFA 369

[Close]
BLAST of MELO3C006038T1 vs. TrEMBL
Match: W9RQ80_9ROSA (Putative WRKY transcription factor 41 OS=Morus notabilis GN=L484_012050 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 

Query: 33  GLQRVQSSEQSAVTEIISATTSVTNSPICIGEWDFSLDNIDFDQNFPFDSLDFIS 88
           GLQ V  SE S +TEIISA TS TNSPI   + DFSLD++D D NFPFD+  F S
Sbjct: 297 GLQYVHRSE-SDLTEIISANTSATNSPI--PDMDFSLDSVDIDPNFPFDTPGFFS 348

[Close]
BLAST of MELO3C006038T1 vs. NCBI nr
Match: gi|659075009|ref|XP_008437915.1| (PREDICTED: probable WRKY transcription factor 46 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 6.8e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI
Sbjct: 254 MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 313

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 88
           CIGEWDFSLDNIDFDQNFPFDSLDFIS
Sbjct: 314 CIGEWDFSLDNIDFDQNFPFDSLDFIS 340

[Close]
BLAST of MELO3C006038T1 vs. NCBI nr
Match: gi|778676947|ref|XP_011650695.1| (PREDICTED: probable WRKY transcription factor 46 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 8.0e-36
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1 

Query: 1   MDPTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPI 60
           M+PTFIPGE LT AAVSSPA+DTAWDWSGYDGG+QRVQSSEQSAVTEI+SATTSVTNSPI
Sbjct: 252 MNPTFIPGEDLT-AAVSSPATDTAWDWSGYDGGVQRVQSSEQSAVTEIVSATTSVTNSPI 311

Query: 61  CIGEWDFSLDNIDFDQNFPFDSLDFIS 88
             G+WDFSLDNIDFD NFPFDSLDFIS
Sbjct: 312 YNGDWDFSLDNIDFDHNFPFDSLDFIS 337

[Close]
BLAST of MELO3C006038T1 vs. NCBI nr
Match: gi|566203346|ref|XP_002320852.2| (hypothetical protein POPTR_0014s09190g [Populus trichocarpa])

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1 

Query: 3   PTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICI 62
           PTFI      A + S+  S +    + +  G Q VQ+ E    TEIISA TSVTNSP  I
Sbjct: 287 PTFIS----PATSESNYFSMSPCHMNSFGIGYQNVQTPESELTTEIISAPTSVTNSP--I 346

Query: 63  GEWDFSLDNIDFDQNFPFDSLDFIS 88
           G++D S+DN+DFD  FPFD+ DF +
Sbjct: 347 GDFDISIDNVDFDTTFPFDNPDFFA 365

[Close]
BLAST of MELO3C006038T1 vs. NCBI nr
Match: gi|743790041|ref|XP_011037871.1| (PREDICTED: probable WRKY transcription factor 46 [Populus euphratica])

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1 

Query: 3   PTFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICI 62
           PTFI      A + S+  S +    + +  G Q VQ+ E    TEI+SA TSVTNSP  I
Sbjct: 285 PTFIS----PATSESNYFSMSPCHMNSFGIGYQNVQTPESELTTEILSAPTSVTNSP--I 344

Query: 63  GEWDFSLDNIDFDQNFPFDSLDFIS 88
           G++D ++DN+DFD  FPFD+ DF +
Sbjct: 345 GDFDIAIDNVDFDTTFPFDNPDFFA 363

[Close]
BLAST of MELO3C006038T1 vs. NCBI nr
Match: gi|259121377|gb|ACV92008.1| (WRKY transcription factor 6 [(Populus tomentosa x Populus bolleana) x Populus tomentosa])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-08
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 4   TFIPGEGLTAAAVSSPASDTAWDWSGYDGGLQRVQSSEQSAVTEIISATTSVTNSPICIG 63
           +F P     A + S+  S +    + +  G   VQ+ E    TEIISA TSVTNSP  IG
Sbjct: 288 SFSPAFISPATSESNYFSMSPCHMNSFGIGYPNVQTPESELTTEIISAPTSVTNSP--IG 347

Query: 64  EWDFSLDNIDFDQNFPFDSLDFIS 88
           ++D S+DN+DFD  FPFD+ DF +
Sbjct: 348 DFDISIDNVDFDTTFPFDNPDFFA 369

The following BLAST results are available for this feature:
BLAST of MELO3C006038T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L772_CUCSA5.6e-3688.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119700 PE=4 SV=1[more]
B9I8V9_POPTR3.4e-0947.06Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09190g PE=4 SV=2[more]
C9DHZ5_9ROSI3.8e-0844.05WRKY transcription factor 6 OS=(Populus tomentosa x Populus bolleana) x Populus ... [more]
W9RQ80_9ROSA2.7e-0661.82Putative WRKY transcription factor 41 OS=Morus notabilis GN=L484_012050 PE=4 SV=... [more]
BLAST of MELO3C006038T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075009|ref|XP_008437915.1|6.8e-43100.00PREDICTED: probable WRKY transcription factor 46 [Cucumis melo][more]
gi|778676947|ref|XP_011650695.1|8.0e-3688.51PREDICTED: probable WRKY transcription factor 46 [Cucumis sativus][more]
gi|566203346|ref|XP_002320852.2|4.9e-0947.06hypothetical protein POPTR_0014s09190g [Populus trichocarpa][more]
gi|743790041|ref|XP_011037871.1|1.9e-0844.71PREDICTED: probable WRKY transcription factor 46 [Populus euphratica][more]
gi|259121377|gb|ACV92008.1|5.4e-0844.05WRKY transcription factor 6 [(Populus tomentosa x Populus bolleana) x Populus to... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C006038MELO3C006038gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C006038T1MELO3C006038T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C006038T1.cds1MELO3C006038T1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3DG3DSA:2.60.40.10coord: 20..64
score: 7.