Cla023444 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla023444
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Small nuclear ribonucleoprotein Sm D3 (AHRD V1 ***- B6UDW2_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core
Location	Chr11 : 20790957 .. 20793260 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGTTCTCATCTCTCTCTCTTTTTTTGGCCTTTTGTTGTTCATCATTAGATTATTCAATTTCTGTTTGTTAGTTGAATCTTTACGTCTTTTGGTCTTGGCTTTAGTTAATATCGTTCATTTTGCTTCTATATCTCTAAAGCTGACCACTTGAATATATAGTTCAAGTACTTTTTGAAATTTGTATAGAACCCTAATTTGGCGTAGTTTCCAGGAATTTCTTGCTTCAAAGGCTGCGATCCCTCTCTTTTCTCTTTTCTTAGTCTTTTTTTTTTTTTTTTAATTTATAATTTTAATACAAAATCTGCGTAGAAAATGAAATTAACGTCGTTCGAACGCCAGAAAATTGGGAGTAGGAAACACTCTCCATGTCGTTACTTTCAACAAATAAAAGGAACAACAATTGCATTTAAACCCCACAGACCTGACATGTATGTTCCAAACCCAAAAGTGTAGCAATTGTCTAATGAGACTGAAAATCGGAAAAAATATGAAAAGAGTGCATTCACTGGTCATTAATGGTGACCCCAACCTCACACCCAGGTTCGATGGTGACGAAGGTAAAACTGGTTCACTACATCTGTAGAGCTGAATAAGTCAATAACTCGAATGTGGGTGCGAATCCGTCCCAGGTTGTAATGTGGGCATTCTTATTGGTCCCGTGACCCTCAATCTCTAGTCTTTGGTGCCACAACCCAAATTGTAACTTTCTCAAGGTTCTTAACATTTTTGGAGGAGAGAGTAGAGTAATCCTGATCTTATGGATTTGCTTTTGCGTATCTTCTGACTTCTAGGCCTGACTTTTTTGGTTTTGTTGCTGTGCTTCTGGTTGTTCTGAATCTCCAAAATGAATCTGGGACAGTGTGTGAAAAGGAGATCTCTATGATTGAGTACCCAGCTTCTTCTTTCAGGAAACCAAAATGGCATGATCTTGATTGCAAAATCAGGATTGATTAAATAAACTAGGGACTAATGTTAACTGTGCACGTCGATTCCTTTCCTCCCGAGTGCGTCGTCTAATTGCAACTTTCTTGGTATGCAATTCACAATCACCAAATTGAATAGGAGAGATTGGCATTATCATAGATTCATATTTCTTGCTATAGACTTTTCAAATAGATTAAGGTTTACTTTTACTAATTTTCTTTGATAATCGATTAGTGTTTTGCTTATGTTATGGTTATTGCTGAATGTCTCTGAGTTTTTCCCCCTTTGCTTGCGTGTATATTATTAAGAGTCATGTTCTTTGGGTTTACTTTATGGGTTTTCTTCTATAGGATGGGAAGGTGTCACAACTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTATCTGTACCATCTCTTGTGTTAGATTATCCAATTACTTTCTGAGTTTTTATTCAAGGGATTTCTTATAGGATTTGGTTGGCATGCTGACATCTGTTCGTACATGACAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGTATTTCAACTTAAATACCTGTGAATTTTAATCCGGATGGAATCCTTGTTCGTTTTCTCTTTTTCCTAACCCATGCTTTCTGGATCTTGAAGGGTAAGGGTGCCTCGCTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGTAAGTCCTATGCATCTTAATTTTTGTACGGTGGTTATTTATTTCCTGGACATGTTTTGAATCAGTATGAAGATCAACTTTGTGCATTTTTTTCCACACATGAGAGGGAAGGATATGATCATTGCTTGTGTATAAGAAATTAAAGATTTATTTTAGTTTTCAAGTTTCTTAATCATCAATTTGGAAGATATTAGGGAATGTTTATTGGCACTATGACCTTCGCAATTCTCTCTTGAAGGAATCTAGAAGTTAGATTCCTTTGCACAGCACGCATGAGTGGTTGTGACCTATGAAATTACTTGTTTGTATTTATGTTTAAAAAATCAGGTTGATGATAGATTACGATGGAAAACAATTATAGAGCATGTCACAAAAATTTTGCACATTTATAAATTTGCAAAAATCAAAACAAATATCCTCTCTTTTTCAGGCTCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCACCATCTGCCCGAAGGTGA

mRNA sequence

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTGTCACAACTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAGGGTGCCTCGCTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCACCATCTGCCCGAAGGTGA

Coding sequence (CDS)

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTGTCACAACTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAGGGTGCCTCGCTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCACCATCTGCCCGAAGGTGA

Protein sequence

MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSARR

Homology

[Close]

BLAST of Cla023444 vs. Swiss-Prot
Match: SMD3B_ARATH (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana GN=SMD3B PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-55
Identity = 112/133 (84.21%), Postives = 118/133 (88.72%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K A   GRG
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 SAPGRGAAPSARR 133
           +  GRGA P  RR
Sbjct: 121 TG-GRGAVPPVRR 131

[Close]

BLAST of Cla023444 vs. Swiss-Prot
Match: SMD3A_ARATH (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana GN=SMD3A PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.8e-55
Identity = 109/132 (82.58%), Postives = 113/132 (85.61%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    GRG+
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAK--GTGRGT 120

Query: 121 APGRGAAPSARR 133
             GRGA P  RR
Sbjct: 121 GGGRGAVPPVRR 128

[Close]

BLAST of Cla023444 vs. Swiss-Prot
Match: SMD3_MOUSE (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-35
Identity = 70/129 (54.26%), Postives = 91/129 (70.54%), Query Frame = 1


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAAPSARR 133
           RG     RR
Sbjct: 122 RGNIFQKRR 126

[Close]

BLAST of Cla023444 vs. Swiss-Prot
Match: SMD3_XENLA (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-35
Identity = 70/129 (54.26%), Postives = 91/129 (70.54%), Query Frame = 1


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAAPSARR 133
           RG     RR
Sbjct: 122 RGNIFQKRR 126

[Close]

BLAST of Cla023444 vs. Swiss-Prot
Match: SMD3_HUMAN (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-35
Identity = 70/129 (54.26%), Postives = 91/129 (70.54%), Query Frame = 1


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAAPSARR 133
           RG     RR
Sbjct: 122 RGNIFQKRR 126

[Close]

BLAST of Cla023444 vs. TrEMBL
Match: A0A0A0L5W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658560 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.0e-65
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSARR 133
           APGRGA PS RR
Sbjct: 121 APGRGAPPSGRR 132

[Close]

BLAST of Cla023444 vs. TrEMBL
Match: D7U4T7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g03650 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.7e-63
Identity = 121/132 (91.67%), Postives = 128/132 (96.97%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR+KGKG++LGVGRGRAVAMRA+AQAAGRG+
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGSALGVGRGRAVAMRARAQAAGRGA 120

Query: 121 APGRGAAPSARR 133
            PGRG AP  RR
Sbjct: 121 PPGRGVAPPGRR 132

[Close]

BLAST of Cla023444 vs. TrEMBL
Match: A0A151TL77_CAJCA (Small nuclear ribonucleoprotein Sm D3 OS=Cajanus cajan GN=KK1_024151 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.1e-63
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGK SQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           APGRG  P  R
Sbjct: 121 APGRGVPPVRR 131

[Close]

BLAST of Cla023444 vs. TrEMBL
Match: A0A151TNS9_CAJCA (Small nuclear ribonucleoprotein Sm D3 OS=Cajanus cajan GN=KK1_022344 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-62
Identity = 121/131 (92.37%), Postives = 127/131 (96.95%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGK SQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR+KGKGASLGVGRGRAVAMRAKAQ+AGRG+
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGASLGVGRGRAVAMRAKAQSAGRGA 120

Query: 121 APGRGAAPSAR 132
           APGRGA P  R
Sbjct: 121 APGRGAPPMRR 131

[Close]

BLAST of Cla023444 vs. TrEMBL
Match: A0A0B2R4H3_GLYSO (Small nuclear ribonucleoprotein Sm D3 OS=Glycine soja GN=glysoja_008466 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-62
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGK SQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRG+
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGA 120

Query: 121 APGRGAAPSAR 132
           APGRG  P  R
Sbjct: 121 APGRGVPPVRR 131

[Close]

BLAST of Cla023444 vs. NCBI nr
Match: gi|659104651|ref|XP_008452950.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-66
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSARR 133
           APGRGA PS RR
Sbjct: 121 APGRGAPPSGRR 132

[Close]

BLAST of Cla023444 vs. NCBI nr
Match: gi|449455595|ref|XP_004145538.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-65
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSARR 133
           APGRGA PS RR
Sbjct: 121 APGRGAPPSGRR 132

[Close]

BLAST of Cla023444 vs. NCBI nr
Match: gi|747064575|ref|XP_011078877.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Sesamum indicum])

HSP 1 Score: 250.4 bits (638), Expect = 1.8e-63
Identity = 122/132 (92.42%), Postives = 129/132 (97.73%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSM+ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRL+ARIKGKG+SLGVGRGRAVAMRA+AQAAGRG+
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLEARIKGKGSSLGVGRGRAVAMRARAQAAGRGA 120

Query: 121 APGRGAAPSARR 133
           APGRGA P  RR
Sbjct: 121 APGRGAVPPVRR 132

[Close]

BLAST of Cla023444 vs. NCBI nr
Match: gi|720032559|ref|XP_010266149.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Nelumbo nucifera])

HSP 1 Score: 250.0 bits (637), Expect = 2.3e-63
Identity = 123/132 (93.18%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKG SLGVGRGRAVAMRA+AQAAGRG+
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGTSLGVGRGRAVAMRARAQAAGRGA 120

Query: 121 APGRGAAPSARR 133
           APGRG  P  RR
Sbjct: 121 APGRGVVPPVRR 132

[Close]

BLAST of Cla023444 vs. NCBI nr
Match: gi|225428263|ref|XP_002282385.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Vitis vinifera])

HSP 1 Score: 248.4 bits (633), Expect = 6.8e-63
Identity = 121/132 (91.67%), Postives = 128/132 (96.97%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR+KGKG++LGVGRGRAVAMRA+AQAAGRG+
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGSALGVGRGRAVAMRARAQAAGRGA 120

Query: 121 APGRGAAPSARR 133
            PGRG AP  RR
Sbjct: 121 PPGRGVAPPGRR 132

The following BLAST results are available for this feature:

BLAST of Cla023444 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SMD3B_ARATH	1.4e-55	84.21	Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana GN=SMD3B PE=2 SV=1	[more]
SMD3A_ARATH	6.8e-55	82.58	Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana GN=SMD3A PE=2 SV=1	[more]
SMD3_MOUSE	1.2e-35	54.26	Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3 PE=1 SV=1	[more]
SMD3_XENLA	1.2e-35	54.26	Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1	[more]
SMD3_HUMAN	1.2e-35	54.26	Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3 PE=1 SV=1	[more]

BLAST of Cla023444 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5W4_CUCSA	1.0e-65	97.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658560 PE=4 SV=1	[more]
D7U4T7_VITVI	4.7e-63	91.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g03650 PE=4 SV=...	[more]
A0A151TL77_CAJCA	8.1e-63	93.89	Small nuclear ribonucleoprotein Sm D3 OS=Cajanus cajan GN=KK1_024151 PE=4 SV=1	[more]
A0A151TNS9_CAJCA	1.4e-62	92.37	Small nuclear ribonucleoprotein Sm D3 OS=Cajanus cajan GN=KK1_022344 PE=4 SV=1	[more]
A0A0B2R4H3_GLYSO	1.8e-62	93.13	Small nuclear ribonucleoprotein Sm D3 OS=Glycine soja GN=glysoja_008466 PE=4 SV=...	[more]

BLAST of Cla023444 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104651\|ref\|XP_008452950.1\|	2.9e-66	98.48	PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis melo]	[more]
gi\|449455595\|ref\|XP_004145538.1\|	1.5e-65	97.73	PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis sativus]	[more]
gi\|747064575\|ref\|XP_011078877.1\|	1.8e-63	92.42	PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Sesamum indicum]	[more]
gi\|720032559\|ref\|XP_010266149.1\|	2.3e-63	93.18	PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Nelumbo nucifera]	[more]
gi\|225428263\|ref\|XP_002282385.1\|	6.8e-63	91.67	PREDICTED: small nuclear ribonucleoprotein Sm D3 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR027141	LSm4/Sm_D1/D3

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0000245	spliceosomal complex assembly
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0034719	SMN-Sm protein complex
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0071010	prespliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0034715	pICln-Sm protein complex
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU09782	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU10454	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla023444	Cla023444.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU09782	WMU09782	transcribed_cluster
WMU10454	WMU10454	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 11..74 score: 3.2
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 10..75 score: 5.2
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 8..126 score: 1.06
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..125 score: 1.4
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 4..77 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla023444	Cla97C11G224800	Watermelon (97103) v2	wmwmbB358
Cla023444	Csa4G658560	Cucumber (Chinese Long) v2	cuwmB350
Cla023444	MELO3C017020	Melon (DHL92) v3.5.1	mewmB545
Cla023444	ClCG11G018690	Watermelon (Charleston Gray)	wcgwmB103
Cla023444	CSPI04G26880	Wild cucumber (PI 183967)	cpiwmB357
Cla023444	Cucsa.272080	Cucumber (Gy14) v1	cgywmB500
Cla023444	CmaCh09G000590	Cucurbita maxima (Rimu)	cmawmB039
Cla023444	CmaCh01G020100	Cucurbita maxima (Rimu)	cmawmB458
Cla023444	CmoCh09G000590	Cucurbita moschata (Rifu)	cmowmB031
Cla023444	CmoCh01G020680	Cucurbita moschata (Rifu)	cmowmB452
Cla023444	Lsi04G018020	Bottle gourd (USVL1VR-Ls)	lsiwmB335
Cla023444	Cp4.1LG02g08340	Cucurbita pepo (Zucchini)	cpewmB585
Cla023444	Cp4.1LG06g00310	Cucurbita pepo (Zucchini)	cpewmB777
Cla023444	CsGy4G025200	Cucumber (Gy14) v2	cgybwmB327
Cla023444	MELO3C017020.2	Melon (DHL92) v3.6.1	medwmB530
Cla023444	Carg08633	Silver-seed gourd	carwmB0104
Cla023444	Carg21375	Silver-seed gourd	carwmB0350
Cla023444	CsaV3_4G037220	Cucumber (Chinese Long) v3	cucwmB368
Cla023444	Bhi09G002400	Wax gourd	wgowmB642

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None