CmoCh09G000590 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G000590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Small nuclear ribonucleoprotein, putative
Location	Cmo_Chr09 : 267368 .. 269851 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACGACGTCGTTTAGATCAAGAGAATGAGAAGGTACTAAAAGTAACGACGCCGTTTTCCGTTTAGTTGTCCTTGCAGGTTCAAGGCTTATAGGAGGCGGGAGGAGCGTTAGGGTTTTAGAGGGTGATTTGAGATTTGCAGAGAGTAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGTGCCTCTCTCTTTTTGCTTTTCGTTGTTCGTCTTAAGATTATGCAACTTTTGTTTGATAGTTGGACCTTTATGTTTGTGGTTTTCGCCTTAGTTCATTTAGTTCATTCTGCTTCTTTATCTCTAAAGCCGTGTACTTCAATATCTGGTTCAAGTACTTTTTGAACTTTGTATAAACCCTAATTTGGTTTAGTTTCCAACAATTTATAGCTTCAACTGCCACGATCTTTTTTTTTTTTTTTTTTTATGACTAATTTTAAAATCTGCTTAGGAAGAACCAGAAATTTTCCGGGAACAGAAAACTCTCTATATGGTAAATTTCAACATATAAGGAACAAAAATTGCATCTAGACTCCAGATCTGACTGGTATGTCCCAAACCCAAAAGGCAACAACTGTAAAATGAGACTGATAATCGGCAAAGCATCAAAACATGAAAAGAGTGCTAATTGCAACTGTAAAATGATCTTGATTGCATGATCAGGATTGATTAAATTAACCAGGGACGAATGTTAATTGTGCACGTCGATTCATCTGCTGAGTGCGCTGTTGAATTGCAACTTTCTTGCTATGCAACTCGTAATCACCAAATTGAATAGGAGAGATCGACATTATCATAGATTCATATTGGTTAATTGGATAGTAAACGATTTCTATAGAATTGTCAAATGGATTAAGGTTTACTGATTTTCTTTGTTTAATCTGTTGGTGTTTTACTTATGTTATGGTTAATTGCTCAATGTCTCCGAGTTTTTCCTCTTTGCTTGCATGTATATAGTTGGGAGTCATGTTCTTCAGGTTCACTTTATGTGTTTTCTTCTATAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTATCTGTACCATCTCCTGTACTATAGACTATCCAATGACTTTCTTAGTTATTCGAAGGGATTTTGTCAGGATTTGGTTGGCATGCTGACATCTGTTTATGCATGATAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGTATTTCAACTTAAATCCTTTGAAATCTAGTCCTGATGAAATCCTTCGTGCTTTTTCTTTTTCCTAACTCATGCTTTTTCAATCCTGAAGGGTAAGGGCGCCTCACTTGGTGTTGGCCGAGGCAGGGCTGTTGCTATGCGAGCTAAAGTAAGTCCCATGCAGCTTAATTTTAGTACGGTGATAATTTATTTCCTCTACACATTTTGAATAAGTACGAAGATCAACTTACATGCCCCTTGTGCATTTTTTCATGTATGAGAGAAGGATTTGATCGCTGCTTGTGTGCATATCTGCCAAGAAATATAGAATCTACTTTAGTTGAAATTACTAGGATATGATCGCTACTTAATCATATCAATTTGGAAGATGTTAGGGAATGTTTCATGGCACTACGAACTTCACAATTCTCTCTTTGAGGCATCCAGAATTTAGGCACATTCACACAAAACGCAGGAACCCACAGATAGTGTTAGGGGAAGTGATCATTACTTGTGAAATCTCTTGTTAGTTTATTTGTTTAAAAACAGGTTGGTGATAGATTTAGAGGGAAAACAACTAGAGTGCGTTACAAAATGTTCGTACACTTTTAAGTTTCCAAAAGTTAACACTAGACATACTCTCTTTTTCAGGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCCAGAGAGCCGTTGGAATATTGATCATCAAGTTTCTTTAGTTCCGGTATTGACATCCTCAACATTGAAGAAGGCTATGTACGTTCATATTGTTGAAAGTGGGCGATTGACCATTATGTTGAGATCGAACAATCTTTTACCCCCATGTTCATCTTTGTTATGTATGTACCGGACGTTCTATGCACCTATATCACCATTGGAGAATTGTCTTTGTGCCATCTATTCTACTCTAATCGTTGGCTGTTGTTAAGGTAATATTAAGTTAATTCCTCTCATAAACAAAGAAAACCCTTATAGAGGGAGGGGCATTTGGTTTTTTTTTTTTTTTTTTGAACGGGAAAGAAGGGAAAGGAAAGAGAAAAACCGACGAACTTTTATTCCTTTGTATCCAG

mRNA sequence

CAACGACGTCGTTTAGATCAAGAGAATGAGAAGGTACTAAAAGTAACGACGCCGTTTTCCGTTTAGTTGTCCTTGCAGGTTCAAGGCTTATAGGAGGCGGGAGGAGCGTTAGGGTTTTAGAGGGTGATTTGAGATTTGCAGAGAGTAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGGTAAGGGCGCCTCACTTGGTGTTGGCCGAGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCCAGAGAGCCGTTGGAATATTGATCATCAAGTTTCTTTAGTTCCGGTATTGACATCCTCAACATTGAAGAAGGCTATGTACGTTCATATTGTTGAAAGTGGGCGATTGACCATTATGTTGAGATCGAACAATCTTTTACCCCCATGTTCATCTTTGTTATGTATGTACCGGACGTTCTATGCACCTATATCACCATTGGAGAATTGTCTTTGTGCCATCTATTCTACTCTAATCGTTGGCTGTTGTTAAGGTAATATTAAGTTAATTCCTCTCATAAACAAAGAAAACCCTTATAGAGGGAGGGGCATTTGGTTTTTTTTTTTTTTTTTTGAACGGGAAAGAAGGGAAAGGAAAGAGAAAAACCGACGAACTTTTATTCCTTTGTATCCAG

Coding sequence (CDS)

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGGTAAGGGCGCCTCACTTGGTGTTGGCCGAGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGA

Homology

[Close]

BLAST of CmoCh09G000590 vs. Swiss-Prot
Match: SMD3B_ARATH (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana GN=SMD3B PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.6e-54
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K  A    G
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 TGGRGAVPPVRR 131

[Close]

BLAST of CmoCh09G000590 vs. Swiss-Prot
Match: SMD3A_ARATH (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana GN=SMD3A PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.9e-53
Identity = 110/132 (83.33%), Postives = 115/132 (87.12%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    G GG
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAKGTGRGTGG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 --GRGAVPPVRR 128

[Close]

BLAST of CmoCh09G000590 vs. Swiss-Prot
Match: SMD3_HUMAN (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.6e-34
Identity = 70/129 (54.26%), Postives = 94/129 (72.87%), Query Frame = 1


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAVPSARR 133
           RG +   RR
Sbjct: 122 RGNIFQKRR 126

[Close]

BLAST of CmoCh09G000590 vs. Swiss-Prot
Match: SMD3_MOUSE (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.6e-34
Identity = 70/129 (54.26%), Postives = 94/129 (72.87%), Query Frame = 1


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAVPSARR 133
           RG +   RR
Sbjct: 122 RGNIFQKRR 126

[Close]

BLAST of CmoCh09G000590 vs. Swiss-Prot
Match: SMD3_XENLA (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.6e-34
Identity = 70/129 (54.26%), Postives = 94/129 (72.87%), Query Frame = 1


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAVPSARR 133
           RG +   RR
Sbjct: 122 RGNIFQKRR 126

[Close]

BLAST of CmoCh09G000590 vs. TrEMBL
Match: A0A0A0L5W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658560 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.0e-62
Identity = 127/132 (96.21%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 ATGRGAVPSARR 133
           A GRGA PS RR
Sbjct: 121 APGRGAPPSGRR 132

[Close]

BLAST of CmoCh09G000590 vs. TrEMBL
Match: A0A0D2NAV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G113900 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.9e-60
Identity = 121/132 (91.67%), Postives = 126/132 (95.45%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSM+ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+IKGK +SLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKSSSLGVGRGRAVAMRAKAQAAGRGT 120

Query: 121 ATGRGAVPSARR 133
             GRG VPS RR
Sbjct: 121 TGGRGVVPSVRR 132

[Close]

BLAST of CmoCh09G000590 vs. TrEMBL
Match: V4V8U5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002830mg PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-59
Identity = 120/132 (90.91%), Postives = 125/132 (94.70%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSM+ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK +S+GVGRGRAVAMRAKA AAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120

Query: 121 ATGRGAVPSARR 133
           A GRG VP  RR
Sbjct: 121 APGRGVVPPVRR 132

[Close]

BLAST of CmoCh09G000590 vs. TrEMBL
Match: A0A067GZD6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032863mg PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-59
Identity = 120/132 (90.91%), Postives = 125/132 (94.70%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSM+ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK +S+GVGRGRAVAMRAKA AAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120

Query: 121 ATGRGAVPSARR 133
           A GRG VP  RR
Sbjct: 121 APGRGVVPPVRR 132

[Close]

BLAST of CmoCh09G000590 vs. TrEMBL
Match: M5Y0E2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013274mg PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-59
Identity = 123/132 (93.18%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSM+ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLD+RIKGKGASLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDSRIKGKGASLGVGRGRAVAMRAKAQAAGRGT 120

Query: 121 ATGRGAVPSARR 133
           A GRG VP  RR
Sbjct: 121 A-GRGVVPPVRR 131

[Close]

BLAST of CmoCh09G000590 vs. TAIR10
Match: AT1G20580.1 (AT1G20580.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 212.6 bits (540), Expect = 1.5e-55
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K  A    G
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 TGGRGAVPPVRR 131

[Close]

BLAST of CmoCh09G000590 vs. TAIR10
Match: AT1G76300.1 (AT1G76300.1 snRNP core protein SMD3)

HSP 1 Score: 209.1 bits (531), Expect = 1.6e-54
Identity = 110/132 (83.33%), Postives = 115/132 (87.12%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    G GG
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAKGTGRGTGG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 --GRGAVPPVRR 128

[Close]

BLAST of CmoCh09G000590 vs. TAIR10
Match: AT5G27720.1 (AT5G27720.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 61.2 bits (147), Expect = 5.4e-10
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 1


Query: 7   IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 67  RGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATGRG 126
           RG+ ++++ +PD + +    ++   R   K   +G GRGR V       A GRG  T  G
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEEK--TRTDRKPPGVGRGRGRGV---DDGGARGRGRGTSMG 121

Query: 127 AVPSAR 132
            +   R
Sbjct: 122 KMGGNR 122

[Close]

BLAST of CmoCh09G000590 vs. NCBI nr
Match: gi|659104651|ref|XP_008452950.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 1.2e-62
Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 ATGRGAVPSARR 133
           A GRGA PS RR
Sbjct: 121 APGRGAPPSGRR 132

[Close]

BLAST of CmoCh09G000590 vs. NCBI nr
Match: gi|449455595|ref|XP_004145538.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.7e-62
Identity = 127/132 (96.21%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 ATGRGAVPSARR 133
           A GRGA PS RR
Sbjct: 121 APGRGAPPSGRR 132

[Close]

BLAST of CmoCh09G000590 vs. NCBI nr
Match: gi|747064575|ref|XP_011078877.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Sesamum indicum])

HSP 1 Score: 241.5 bits (615), Expect = 8.3e-61
Identity = 122/132 (92.42%), Postives = 128/132 (96.97%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSM+ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRL+ARIKGKG+SLGVGRGRAVAMRA+AQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLEARIKGKGSSLGVGRGRAVAMRARAQAAGRGA 120

Query: 121 ATGRGAVPSARR 133
           A GRGAVP  RR
Sbjct: 121 APGRGAVPPVRR 132

[Close]

BLAST of CmoCh09G000590 vs. NCBI nr
Match: gi|720032559|ref|XP_010266149.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Nelumbo nucifera])

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-60
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKG SLGVGRGRAVAMRA+AQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGTSLGVGRGRAVAMRARAQAAGRGA 120

Query: 121 ATGRGAVPSARR 133
           A GRG VP  RR
Sbjct: 121 APGRGVVPPVRR 132

[Close]

BLAST of CmoCh09G000590 vs. NCBI nr
Match: gi|695064545|ref|XP_009420826.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 240.4 bits (612), Expect = 1.8e-60
Identity = 124/133 (93.23%), Postives = 129/133 (96.99%), Query Frame = 1


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI+GKG++LGVGRGRAVAMRA+AQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIRGKGSALGVGRGRAVAMRARAQAAGRGG 120

Query: 121 A-TGRGAVPSARR 133
           A TGRG VP  RR
Sbjct: 121 APTGRGVVPPIRR 133

The following BLAST results are available for this feature:

BLAST of CmoCh09G000590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SMD3B_ARATH	2.6e-54	84.09	Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana GN=SMD3B PE=2 SV=1	[more]
SMD3A_ARATH	2.9e-53	83.33	Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana GN=SMD3A PE=2 SV=1	[more]
SMD3_HUMAN	6.6e-34	54.26	Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3 PE=1 SV=1	[more]
SMD3_MOUSE	6.6e-34	54.26	Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3 PE=1 SV=1	[more]
SMD3_XENLA	6.6e-34	54.26	Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1	[more]

BLAST of CmoCh09G000590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5W4_CUCSA	4.0e-62	96.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658560 PE=4 SV=1	[more]
A0A0D2NAV0_GOSRA	4.9e-60	91.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G113900 PE=4 SV=1	[more]
V4V8U5_9ROSI	1.1e-59	90.91	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002830mg PE=4 SV=1	[more]
A0A067GZD6_CITSI	1.1e-59	90.91	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032863mg PE=4 SV=1	[more]
M5Y0E2_PRUPE	1.1e-59	93.18	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013274mg PE=4 SV=1	[more]

BLAST of CmoCh09G000590 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20580.1	1.5e-55	84.09	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	1.6e-54	83.33	snRNP core protein SMD3	[more]
AT5G27720.1	5.4e-10	32.54	Small nuclear ribonucleoprotein family protein	[more]

BLAST of CmoCh09G000590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104651\|ref\|XP_008452950.1\|	1.2e-62	96.97	PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis melo]	[more]
gi\|449455595\|ref\|XP_004145538.1\|	5.7e-62	96.21	PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis sativus]	[more]
gi\|747064575\|ref\|XP_011078877.1\|	8.3e-61	92.42	PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Sesamum indicum]	[more]
gi\|720032559\|ref\|XP_010266149.1\|	1.1e-60	93.18	PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Nelumbo nucifera]	[more]
gi\|695064545\|ref\|XP_009420826.1\|	1.8e-60	93.23	PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Musa acuminata subsp. mal...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR027141	LSm4/Sm_D1/D3

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G000590.1	CmoCh09G000590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 11..74 score: 3.2
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 10..75 score: 5.2
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 8..128 score: 8.31
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..125 score: 1.3
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 4..77 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G000590	Cucsa.272080	Cucumber (Gy14) v1	cgycmoB0742
CmoCh09G000590	CmaCh09G000590	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G000590	CmaCh01G020100	Cucurbita maxima (Rimu)	cmacmoB435
CmoCh09G000590	Cla023444	Watermelon (97103) v1	cmowmB031
CmoCh09G000590	Csa4G658560	Cucumber (Chinese Long) v2	cmocuB015
CmoCh09G000590	MELO3C017020	Melon (DHL92) v3.5.1	cmomeB026
CmoCh09G000590	ClCG11G018690	Watermelon (Charleston Gray)	cmowcgB010
CmoCh09G000590	CSPI04G26880	Wild cucumber (PI 183967)	cmocpiB016
CmoCh09G000590	Lsi04G018020	Bottle gourd (USVL1VR-Ls)	cmolsiB012
CmoCh09G000590	Cp4.1LG02g08340	Cucurbita pepo (Zucchini)	cmocpeB020
CmoCh09G000590	Cp4.1LG06g00310	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G000590	MELO3C017020.2	Melon (DHL92) v3.6.1	cmomedB026
CmoCh09G000590	CsaV3_4G037220	Cucumber (Chinese Long) v3	cmocucB0020
CmoCh09G000590	Cla97C11G224800	Watermelon (97103) v2	cmowmbB010
CmoCh09G000590	Bhi09G002400	Wax gourd	cmowgoB0023
CmoCh09G000590	CsGy4G025200	Cucumber (Gy14) v2	cgybcmoB438
CmoCh09G000590	Carg21375	Silver-seed gourd	carcmoB0484
CmoCh09G000590	Carg08633	Silver-seed gourd	carcmoB0144

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G000590	CmoCh01G020680	Cucurbita moschata (Rifu)	cmocmoB017

The following block(s) are covering this gene:

None