Carg08633 (gene) Silver-seed gourd

Overview
NameCarg08633
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSmall nuclear ribonucleoprotein Sm D3
LocationCucurbita_argyrosperma_scaffold_057 : 254424 .. 256852 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGACGCCGTTTTCCGTTTAGTTGTCCTTGCAGGTTCAAGGCTTATAGGAGGCGGGAGGAGCGTTAGGGTTTTAGAGGGTGATTTGAGATTTGCAGAGAGTAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGTGCCTCTCTCTTTTTGCTTTTCGTTGTTCGTCTTAAGATTATGCAACTTTTGTTTGATAGTTGGACCTTTATGTTTGTGGTTTTCGCCTTAGTTCATTTAGTTCATTCTGCTTCTTTATCTCTAAAGCCGTGTACTTCAATATCTGGTTCAAGTACTTTTTGAACTTTGAATAAACCCTAATTTGGTTTAGTTTCCAACAATTTATAGCTTGAACTGCCACGATCTTTTTTTTTTTTTTTTTTTATGACTAATTTTAATACAAAATCTGCTTAGGAAGAACCAGAAAATTTCCGGGAACAGAAAACTCTCTATATGGTAAATTTCAACATATAAGGAACAAAAATTGCATCTAGACTCCAGGCCTGACTGGTATGTCCCAAACCCAAAAGGCAACAACTGTAAAATGAGACTGAAAATCGGCAAAGCATCAAAACATGAAAAGAGTGCTAATTGCGATCTTGATTGCATGATCTGGATTGATTAAATTAACTAGGGACGAATGTTAATTGTGCACGTCGATTCATCTGCTGAGTGCGCTGTTTAATTGCAACTTTCTTGCTATGCACCTCGTAATCACCAAATTGAATAGGAGAGATCGATATTATCATAGATTCATATTGGTTAATTGGATAGTAAACGATTTCTATAAAATTGTCAAATGGATTAAGGTTTACTGATTTTCTTTGTTTAATCTGTTGGTGTTTTACTTATGTTATGGTTAATTGCTCAATGTCTCCGAGTTTTTCCCCTTTGCTTGCATGTATATAGTTGGGAGTCATGTTCTTCAGGTTCACTTTATGTGTTTTCTTCCATAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTATCTGTACCATCTCCTGTATTATAGACTATCCAATGACTTTCTTAGTTATTCGAAGGGATTTTGTCAGGATTTGGTTGGCATGCTGACATCTGTTTATGCATGATAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGTATTTCAACTTAAATCCTTTGAAATCTAGTCCTGATGAAATCCTTGCGTGCTTTTTCTTTTTCCTAACTCATGCTTTTTCAATCCTGAAGGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGTAAGTCCCATGCAGCTTAATTTTAGTACGGTGAAAATTTATTTCCTCTACACATTTTGAATAAGTACGAAGATCAACTTACATGCCCCTTGTGCATTTTTTCATGTATGAGAGAAGGATTTGATCGCTGCTTGTGTGCATATCTGCCAAGAAATATAGAATCTACTTTAGTTGAAATTACTAGGATATGATCGCTATTTAATCATATCAATTTGGAAGATGTTAGGGAATGTTTCATGGCACTACGAACTTCACATTTCTCTCTCTGAGGCATCCAGAATTTAGGCACATTCACACAAAACGCAGGAACCCACAGATAGTGTTAGGGGAAGTGATTATTACTTGTGAAATCTCTTGTTAGTTTATATGTTTAAAAACAGGTTGGTGATAGATTTAGAGGGAAAACAACTAGAATGCGTTACAAAATGTTCGTACACTTTTTAAGTTTCCAAAAGTTAACACTAGACATACTCTCTTTTTCAGGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCCAGAGAGCCGTTGGAATATTGATCATCAAGTTTCTTTAGTTCCGGTATTGACATCCTCAACATTGAAGAAGGCTATGTACGTTGTTCATTTTGTTGAAAGTGGGCGATTGACCATTATATATCTTCAACTTCATAATCTAATTTTTACTTCAGGCGATTTTATGTCGAGATCGAACAATCTTTTACCCCCATGTTCATCTTTGTTATGTATGTACCGGACGTTCTTTGCACCTATATCACCATTGGAGAATTGTCTTTGTGCCATCTATTCTACTCTAATCGTTGGCTGTTGTTAAGGTAATATTAAGTTAATTCCTCTCATAAACAAAGAAGACCCTTATAGAGGGAGGGGCATTTGGTTTTTTCTTTTCTTTTCTTTTTTC

mRNA sequence

AACGACGCCGTTTTCCGTTTAGTTGTCCTTGCAGGTTCAAGGCTTATAGGAGGCGGGAGGAGCGTTAGGGTTTTAGAGGGTGATTTGAGATTTGCAGAGAGTAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCCAGAGAGCCGTTGGAATATTGATCATCAAGTTTCTTTAGTTCCGGTATTGACATCCTCAACATTGAAGAAGGCTATGTACGTTGTTCATTTTGTTGAAAGTGGGCGATTGACCATTATATATCTTCAACTTCATAATCTAATTTTTACTTCAGGCGATTTTATGTCGAGATCGAACAATCTTTTACCCCCATGTTCATCTTTGTTATGTATGTACCGGACGTTCTTTGCACCTATATCACCATTGGAGAATTGTCTTTGTGCCATCTATTCTACTCTAATCGTTGGCTGTTGTTAAGGTAATATTAAGTTAATTCCTCTCATAAACAAAGAAGACCCTTATAGAGGGAGGGGCATTTGGTTTTTTCTTTTCTTTTCTTTTTTC

Coding sequence (CDS)

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGA

Protein sequence

MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATGRGAVPSARR
Homology
[Close]
BLAST of Carg08633 vs. NCBI nr
Match: XP_022937091.1 (small nuclear ribonucleoprotein SmD3b-like [Cucurbita moschata] >XP_022974862.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita maxima] >XP_023534840.1 small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534841.1 small nuclear ribonucleoprotein SmD3b-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-49
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XTGRGAVPSARR 133
           XTGRGAVPSARR
Sbjct: 121 XTGRGAVPSARR 132

[Close]
BLAST of Carg08633 vs. NCBI nr
Match: XP_023522400.1 (small nuclear ribonucleoprotein SmD3b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.4 bits (516), Expect = 4.9e-49
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XTGRGAVPSARR 133
            TGRG VPSARR
Sbjct: 121 ATGRGVVPSARR 132

[Close]
BLAST of Carg08633 vs. NCBI nr
Match: XP_022940723.1 (small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita moschata] >XP_022981932.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita maxima])

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I  XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XTGRGAVPSARR 133
           XTGRGAVPSARR
Sbjct: 121 XTGRGAVPSARR 132

[Close]
BLAST of Carg08633 vs. NCBI nr
Match: XP_022749600.1 (small nuclear ribonucleoprotein SmD3b-like [Durio zibethinus])

HSP 1 Score: 196.4 bits (498), Expect = 5.9e-47
Identity = 124/132 (93.94%), Postives = 127/132 (96.21%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+IKGXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGXXXXXXXXXXXXXXXXXXXXXXXXXT 120

Query: 121 XTGRGAVPSARR 133
             GRG VPS RR
Sbjct: 121 TAGRGVVPSVRR 132

[Close]
BLAST of Carg08633 vs. NCBI nr
Match: XP_008452950.1 (PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 7.8e-47
Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XTGRGAVPSARR 133
           X  RGA PS RR
Sbjct: 121 XXXRGAPPSGRR 132

[Close]
BLAST of Carg08633 vs. TAIR10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-47
Identity = 106/132 (80.30%), Postives = 112/132 (84.85%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKG       XXXXX        XXXXX 
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVXXXXXAMRGKPAAXXXXXT 120

Query: 121 XTGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 G-GRGAVPPVRR 131

[Close]
BLAST of Carg08633 vs. TAIR10
Match: AT1G76300.1 (snRNP core protein SMD3)

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-43
Identity = 80/86 (93.02%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
          MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1  MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFK 87
          EHVFIRGS VRF+VIPDMLKNAPMFK
Sbjct: 61 EHVFIRGSLVRFLVIPDMLKNAPMFK 86

[Close]
BLAST of Carg08633 vs. TAIR10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 60.8 bits (146), Expect = 7.1e-10
Identity = 26/72 (36.11%), Postives = 45/72 (62.50%), Query Frame = 0 

Query: 7  IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66
          +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 67 RGSKVRFMVIPD 78
          RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73

[Close]
BLAST of Carg08633 vs. TAIR10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 48.1 bits (113), Expect = 4.7e-06
Identity = 22/85 (25.88%), Postives = 44/85 (51.76%), Query Frame = 0 

Query: 9  VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
          V+ L +     VS+ELK+G +  G++   + + N  L+ +  + K      L+H+ +RG+
Sbjct: 4  VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69 KVRFMVIPDMLKNAPMFKRLDARIK 94
           +R+ ++PD L    +      R+K
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVK 88

[Close]
BLAST of Carg08633 vs. TAIR10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 24/95 (25.26%), Postives = 45/95 (47.37%), Query Frame = 0 

Query: 9  VKLLHEAAGHVVSVELKSGELYRGSMIE----------CEDNWNCQLENITYTAKDGKVS 68
          V+ L +     VS+ELK+G +  G++ +           + + N  L+ +  T K     
Sbjct: 4  VRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGKNPV 63

Query: 69 QLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIK 94
           L+H+ +RG+ +R+ ++PD L    +      RIK
Sbjct: 64 TLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIK 98

[Close]
BLAST of Carg08633 vs. Swiss-Prot
Match: sp|Q9LM92|SMD3B_ARATH (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.0e-46
Identity = 106/132 (80.30%), Postives = 112/132 (84.85%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKG       XXXXX        XXXXX 
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVXXXXXAMRGKPAAXXXXXT 120

Query: 121 XTGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 G-GRGAVPPVRR 131

[Close]
BLAST of Carg08633 vs. Swiss-Prot
Match: sp|Q9S7E6|SMD3A_ARATH (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.1e-42
Identity = 80/86 (93.02%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
          MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1  MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFK 87
          EHVFIRGS VRF+VIPDMLKNAPMFK
Sbjct: 61 EHVFIRGSLVRFLVIPDMLKNAPMFK 86

[Close]
BLAST of Carg08633 vs. Swiss-Prot
Match: sp|P62318|SMD3_HUMAN (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.5e-29
Identity = 53/85 (62.35%), Postives = 72/85 (84.71%), Query Frame = 0 

Query: 4  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
          S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2  SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRL 89
          +IRGSK+RF+++PDMLKNAPM K +
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM 86

[Close]
BLAST of Carg08633 vs. Swiss-Prot
Match: sp|P62320|SMD3_MOUSE (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.5e-29
Identity = 53/85 (62.35%), Postives = 72/85 (84.71%), Query Frame = 0 

Query: 4  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
          S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2  SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRL 89
          +IRGSK+RF+++PDMLKNAPM K +
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM 86

[Close]
BLAST of Carg08633 vs. Swiss-Prot
Match: sp|P62323|SMD3_XENLA (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.5e-29
Identity = 53/85 (62.35%), Postives = 72/85 (84.71%), Query Frame = 0 

Query: 4  SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
          S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2  SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRL 89
          +IRGSK+RF+++PDMLKNAPM K +
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM 86

[Close]
BLAST of Carg08633 vs. TrEMBL
Match: tr|A0A1S3BVV0|A0A1S3BVV0_CUCME (small nuclear ribonucleoprotein SmD3a-like OS=Cucumis melo OX=3656 GN=LOC103493808 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 5.1e-47
Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XTGRGAVPSARR 133
           X  RGA PS RR
Sbjct: 121 XXXRGAPPSGRR 132

[Close]
BLAST of Carg08633 vs. TrEMBL
Match: tr|A0A2I4DPF3|A0A2I4DPF3_9ROSI (small nuclear ribonucleoprotein SmD3b-like OS=Juglans regia OX=51240 GN=LOC108982185 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 8.8e-47
Identity = 124/132 (93.94%), Postives = 126/132 (95.45%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXA 120

Query: 121 XTGRGAVPSARR 133
             GRG VP  RR
Sbjct: 121 PPGRGVVPPVRR 132

[Close]
BLAST of Carg08633 vs. TrEMBL
Match: tr|A0A0D2NAV0|A0A0D2NAV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G113900 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 8.8e-47
Identity = 123/132 (93.18%), Postives = 127/132 (96.21%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSM+ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+IKGXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGXXXXXXXXXXXXXXXXXXXXXXXXXT 120

Query: 121 XTGRGAVPSARR 133
             GRG VPS RR
Sbjct: 121 TGGRGVVPSVRR 132

[Close]
BLAST of Carg08633 vs. TrEMBL
Match: tr|A0A2I4FXM1|A0A2I4FXM1_9ROSI (small nuclear ribonucleoprotein SmD3b OS=Juglans regia OX=51240 GN=LOC109002935 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-46
Identity = 126/132 (95.45%), Postives = 128/132 (96.97%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XTGRGAVPSARR 133
           X GRG VP  RR
Sbjct: 121 XPGRGIVPPVRR 132

[Close]
BLAST of Carg08633 vs. TrEMBL
Match: tr|A0A1U8AJM2|A0A1U8AJM2_NELNU (small nuclear ribonucleoprotein SmD3b-like OS=Nelumbo nucifera OX=4432 GN=LOC104603743 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-46
Identity = 126/132 (95.45%), Postives = 128/132 (96.97%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVV+VELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XTGRGAVPSARR 133
           X GRG VP  RR
Sbjct: 121 XPGRGVVPPVRR 132

The following BLAST results are available for this feature:
BLAST of Carg08633 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937091.11.7e-49100.00small nuclear ribonucleoprotein SmD3b-like [Cucurbita moschata] >XP_022974862.1 ... [more]
XP_023522400.14.9e-4998.48small nuclear ribonucleoprotein SmD3b-like [Cucurbita pepo subsp. pepo][more]
XP_022940723.11.2e-4797.73small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita moschata] >XP_0... [more]
XP_022749600.15.9e-4793.94small nuclear ribonucleoprotein SmD3b-like [Durio zibethinus][more]
XP_008452950.17.8e-4796.97PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo][more]
BLAST of Carg08633 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G20580.11.1e-4780.30Small nuclear ribonucleoprotein family protein[more]
AT1G76300.12.8e-4393.02snRNP core protein SMD3[more]
AT5G27720.17.1e-1036.11Small nuclear ribonucleoprotein family protein[more]
AT3G07590.14.7e-0625.88Small nuclear ribonucleoprotein family protein[more]
AT4G02840.21.2e-0425.26Small nuclear ribonucleoprotein family protein[more]
BLAST of Carg08633 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LM92|SMD3B_ARATH2.0e-4680.30Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B P... [more]
sp|Q9S7E6|SMD3A_ARATH5.1e-4293.02Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A P... [more]
sp|P62318|SMD3_HUMAN8.5e-2962.35Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=... [more]
sp|P62320|SMD3_MOUSE8.5e-2962.35Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV... [more]
sp|P62323|SMD3_XENLA8.5e-2962.35Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 S... [more]
BLAST of Carg08633 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BVV0|A0A1S3BVV0_CUCME5.1e-4796.97small nuclear ribonucleoprotein SmD3a-like OS=Cucumis melo OX=3656 GN=LOC1034938... [more]
tr|A0A2I4DPF3|A0A2I4DPF3_9ROSI8.8e-4793.94small nuclear ribonucleoprotein SmD3b-like OS=Juglans regia OX=51240 GN=LOC10898... [more]
tr|A0A0D2NAV0|A0A0D2NAV0_GOSRA8.8e-4793.18Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G113900 PE=4 ... [more]
tr|A0A2I4FXM1|A0A2I4FXM1_9ROSI1.1e-4695.45small nuclear ribonucleoprotein SmD3b OS=Juglans regia OX=51240 GN=LOC109002935 ... [more]
tr|A0A1U8AJM2|A0A1U8AJM2_NELNU1.1e-4695.45small nuclear ribonucleoprotein SmD3b-like OS=Nelumbo nucifera OX=4432 GN=LOC104... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
GO:0006396RNA processing
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR034099SmD3
IPR027141LSm4/Sm_D1/D3
IPR001163LSM_dom_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005575 cellular_component
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08633-RACarg08633-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 10..75
e-value: 5.2E-17
score: 72.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 11..74
e-value: 3.3E-15
score: 55.4
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 3..86
e-value: 2.6E-34
score: 118.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..132
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 5..120
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 5..120
IPR034099Small nuclear ribonucleoprotein Sm D3CDDcd01721Sm_D3coord: 8..77
e-value: 1.00434E-45
score: 144.201
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 8..128