Carg19239 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTCGACTCTGAAAGAAGGCATCTATACATTCAGCTTGCTTCCTTATTTATATTCTCCCTGTCTAGCAAAGGTAAGCAGAAAGCCAAAAACCAGGTGGTCACATAGAGACGGAAGAAATGAGGAGCATGAAAGGAGAGGTGTCATTGAACCTGCCCGCCGAGAAAGCATGGCAGATGTACAGAGACAACGAGGTTATCAGTAAAATCAATCCTGAACTGCTTTCTCGAGCTGAATATGTTCAAGGAGATGGTGGCCCTGGAACTCTCAGGCTCTTCAAGCTTGGCCCTGGTACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGATATTCTTGTTTTAAATATCTTCTTAATTTTTTTGTTTCCATACACAAATCCATGAAAACCATAGCTGAATTCTTAGTCTTTAATTCTAGACACTGCTTGTTGGGTGGATTTTAAACACCGTCAAGATATCTAACATCTTTGTTTACAAGGGAAAAAAAGTGATAGCGTAGTGTAATAAATGAGTTATTATTGATTATGATGAGACGTGTAGCCTTGAGAAGCTACGTGGGGGAGTCGGTGGAGAAGATAGAGAAGGTGGAGACAGGTCGATCAGTGAGCTACGACGTGGTGGGAGGAGAGCTAATGAAGATGTATAATCCGTACAAAGTGACCTTCACATTCACTCCAGTGGAAGGAAAAGAGATGGAAATGTGCACCGCTCAGTGGCAAGCTGAATACGAGCCACTGTCTCCCACCATCCCTCCACCGGACAAGGCTAGGGATGCTGCCTTGCGGTTCCTCCAGTGCTTTGACAAGTTTGACCTCAGCTTCTAG CTCGACTCTGAAAGAAGGCATCTATACATTCAGCTTGCTTCCTTATTTATATTCTCCCTGTCTAGCAAAGGTAAGCAGAAAGCCAAAAACCAGGTGGTCACATAGAGACGGAAGAAATGAGGAGCATGAAAGGAGAGGTGTCATTGAACCTGCCCGCCGAGAAAGCATGGCAGATGTACAGAGACAACGAGGTTATCAGTAAAATCAATCCTGAACTGCTTTCTCGAGCTGAATATGTTCAAGGAGATGGTGGCCCTGGAACTCTCAGGCTCTTCAAGCTTGGCCCTGCCTTGAGAAGCTACGTGGGGGAGTCGGTGGAGAAGATAGAGAAGGTGGAGACAGGTCGATCAGTGAGCTACGACGTGGTGGGAGGAGAGCTAATGAAGATGTATAATCCGTACAAAGTGACCTTCACATTCACTCCAGTGGAAGGAAAAGAGATGGAAATGTGCACCGCTCAGTGGCAAGCTGAATACGAGCCACTGTCTCCCACCATCCCTCCACCGGACAAGGCTAGGGATGCTGCCTTGCGGTTCCTCCAGTGCTTTGACAAGTTTGACCTCAGCTTCTAG ATGAGGAGCATGAAAGGAGAGGTGTCATTGAACCTGCCCGCCGAGAAAGCATGGCAGATGTACAGAGACAACGAGGTTATCAGTAAAATCAATCCTGAACTGCTTTCTCGAGCTGAATATGTTCAAGGAGATGGTGGCCCTGGAACTCTCAGGCTCTTCAAGCTTGGCCCTGCCTTGAGAAGCTACGTGGGGGAGTCGGTGGAGAAGATAGAGAAGGTGGAGACAGGTCGATCAGTGAGCTACGACGTGGTGGGAGGAGAGCTAATGAAGATGTATAATCCGTACAAAGTGACCTTCACATTCACTCCAGTGGAAGGAAAAGAGATGGAAATGTGCACCGCTCAGTGGCAAGCTGAATACGAGCCACTGTCTCCCACCATCCCTCCACCGGACAAGGCTAGGGATGCTGCCTTGCGGTTCCTCCAGTGCTTTGACAAGTTTGACCTCAGCTTCTAG MRSMKGEVSLNLPAEKAWQMYRDNEVISKINPELLSRAEYVQGDGGPGTLRLFKLGPALRSYVGESVEKIEKVETGRSVSYDVVGGELMKMYNPYKVTFTFTPVEGKEMEMCTAQWQAEYEPLSPTIPPPDKARDAALRFLQCFDKFDLSF
BLAST of Carg19239 vs. NCBI nr
Match: XP_022952445.1 (uncharacterized protein LOC111455132 [Cucurbita moschata] >XP_022952446.1 uncharacterized protein LOC111455132 [Cucurbita moschata] >XP_023554634.1 uncharacterized protein LOC111811825 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 310.1 bits (793), Expect = 4.2e-81 Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0
BLAST of Carg19239 vs. NCBI nr
Match: XP_022969285.1 (uncharacterized protein LOC111468337 [Cucurbita maxima]) HSP 1 Score: 306.6 bits (784), Expect = 4.7e-80 Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0
BLAST of Carg19239 vs. NCBI nr
Match: XP_022147870.1 (uncharacterized protein LOC111016704 [Momordica charantia]) HSP 1 Score: 285.0 bits (728), Expect = 1.5e-73 Identity = 135/151 (89.40%), Postives = 143/151 (94.70%), Query Frame = 0
BLAST of Carg19239 vs. NCBI nr
Match: XP_004136826.1 (PREDICTED: uncharacterized protein LOC101207223 [Cucumis sativus] >KGN43618.1 hypothetical protein Csa_7G048020 [Cucumis sativus]) HSP 1 Score: 279.6 bits (714), Expect = 6.1e-72 Identity = 133/151 (88.08%), Postives = 143/151 (94.70%), Query Frame = 0
BLAST of Carg19239 vs. NCBI nr
Match: XP_008455315.1 (PREDICTED: uncharacterized protein LOC103495511 [Cucumis melo]) HSP 1 Score: 278.9 bits (712), Expect = 1.0e-71 Identity = 133/151 (88.08%), Postives = 142/151 (94.04%), Query Frame = 0
BLAST of Carg19239 vs. TAIR10
Match: AT1G24020.1 (MLP-like protein 423) HSP 1 Score: 69.3 bits (168), Expect = 2.3e-12 Identity = 44/144 (30.56%), Postives = 71/144 (49.31%), Query Frame = 0
BLAST of Carg19239 vs. TAIR10
Match: AT1G23120.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09 Identity = 40/149 (26.85%), Postives = 72/149 (48.32%), Query Frame = 0
BLAST of Carg19239 vs. TAIR10
Match: AT1G70880.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) HSP 1 Score: 46.2 bits (108), Expect = 2.1e-05 Identity = 36/131 (27.48%), Postives = 61/131 (46.56%), Query Frame = 0
BLAST of Carg19239 vs. Swiss-Prot
Match: sp|Q93VR4|ML423_ARATH (MLP-like protein 423 OS=Arabidopsis thaliana OX=3702 GN=MLP423 PE=2 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 4.1e-11 Identity = 44/144 (30.56%), Postives = 71/144 (49.31%), Query Frame = 0
BLAST of Carg19239 vs. Swiss-Prot
Match: sp|P92918|ALL2_APIGR (Major allergen Api g 1, isoallergen 2 OS=Apium graveolens OX=4045 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 6.8e-06 Identity = 37/134 (27.61%), Postives = 64/134 (47.76%), Query Frame = 0
BLAST of Carg19239 vs. Swiss-Prot
Match: sp|G7J032|PHBP_MEDTR (Phytohormone-binding protein OS=Medicago truncatula OX=3880 GN=MTR_3g055120 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 6.8e-06 Identity = 39/154 (25.32%), Postives = 69/154 (44.81%), Query Frame = 0
BLAST of Carg19239 vs. Swiss-Prot
Match: sp|P27538|PR2_PETCR (Pathogenesis-related protein 2 OS=Petroselinum crispum OX=4043 GN=PR2 PE=2 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 2.0e-05 Identity = 34/135 (25.19%), Postives = 67/135 (49.63%), Query Frame = 0
BLAST of Carg19239 vs. Swiss-Prot
Match: sp|Q08407|MPAC1_CORAV (Major pollen allergen Cor a 1 isoforms 5, 6, 11 and 16 OS=Corylus avellana OX=13451 PE=1 SV=3) HSP 1 Score: 48.5 bits (114), Expect = 7.5e-05 Identity = 25/81 (30.86%), Postives = 49/81 (60.49%), Query Frame = 0
BLAST of Carg19239 vs. TrEMBL
Match: tr|A0A0A0K2C4|A0A0A0K2C4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G048020 PE=4 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 4.0e-72 Identity = 133/151 (88.08%), Postives = 143/151 (94.70%), Query Frame = 0
BLAST of Carg19239 vs. TrEMBL
Match: tr|A0A1S3C1C9|A0A1S3C1C9_CUCME (uncharacterized protein LOC103495511 OS=Cucumis melo OX=3656 GN=LOC103495511 PE=4 SV=1) HSP 1 Score: 278.9 bits (712), Expect = 6.9e-72 Identity = 133/151 (88.08%), Postives = 142/151 (94.04%), Query Frame = 0
BLAST of Carg19239 vs. TrEMBL
Match: tr|A0A067E917|A0A067E917_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031888mg PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 3.9e-59 Identity = 109/151 (72.19%), Postives = 132/151 (87.42%), Query Frame = 0
BLAST of Carg19239 vs. TrEMBL
Match: tr|A0A2N9EUD1|A0A2N9EUD1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6317 PE=4 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 1.5e-58 Identity = 107/149 (71.81%), Postives = 131/149 (87.92%), Query Frame = 0
BLAST of Carg19239 vs. TrEMBL
Match: tr|A0A061E395|A0A061E395_THECC (Polyketide cyclase/dehydrase and lipid transport superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_008111 PE=4 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 1.5e-58 Identity = 106/151 (70.20%), Postives = 132/151 (87.42%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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