Carg22192 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22192
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	R3H domain-containing protein 4
Location	Cucurbita_argyrosperma_scaffold_274 : 313647 .. 316926 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCACTGATGTTCTTAACCAAGAACAGAATCGTTTCACCTTTTCCCCTCTCAGCGATCCAATTAAAGGTACTTCTTCTTCTAATTAAAATAGCATTTGCCGATTAATAAACGATCCTTTATTTAGATTTAGTAATACACATTTGAATAATTTTCTGCTTCGATGATACGATTTCTTAGAATTTTTCTCTATGGATTTATGTTTCTCTCTGACTGTCTTATTGGATTAATTTCACAGGCGATGAGAATTCTCGGGGTATGTCCATCGAGAAAAAGATTGAATTTCTGGAGAGCTTGACTGGAAAGGTCGGTTCTGAATGATCTTCTTAGAGCTTAATTACTTCCCTCAGGACTGTTCTGTGAACTGCTCACTTGTCTTTAGCTTTGTTAATGCAACATAATCCTTTTGCAATGTGCTTTGGATGAACTGGAAGTTCATTTATATGGTTACTTAAGGAAGAAATATTACCAAAATTTATGGATTGTTTTCCATGCCAAAATATGGTCTCCTTTGCAGATTCATTTGGAGTAGTTTTCATGTGGCAAACTTGTGTCTAGCATTTGCTATCTATGCTCTAATTGGAAGTTGGAATTCTACCTGTGTGATACTGATGATAGCTCTCTTATTATCAGGTTACTAATAGGAAGTCTCGCAGATGGTTAAACGATCGACTTTTAATGGAGCTTGTTCCTCGTTTGAATGCCGAGGAAATTAGAGGCTTGTTTGCTCCACCGCCTTGGGGTATATAATGCATCTAAAGAATCTTTTCATATTATGCAAGTTGTGATGAGATATCTGTGATATAGATACTTAATATTTTTGAAATTAGAGTTGTTTTTCCATCGCTTCGTGTCATCTTACATTATAGGATTCAAAGTACAAAATGGAACTATCCGTTCGTTCATTACAACCAAGGAAAGTTCATAACTCCTGTCTTAAAAGACCACCAGAACCTTTCGATCATACACTTTCAATCATAAGATTACTGGGAAAGTTAATGAAGTAGATATTTTTGGATAATTAGATCCTGGAAAGTGTTCTAGCCTTATATTTTAATTAGTGGTATTTTGAAATTTGCCAGTTGATAGGTTATAGGACTCGGCGCCAGTAAGAATTTTCGTAGCCTGTTAGCCATGTTTAGCAATCGAGGTTTTGCATTTTTCATTATGCTTATTTAACTGTCGTATGCGGTTCTTGGTTATTTTCTTTTTGATGTTATTCTGAGTTGATTTGTGCAAGACATTTTTTCCCCCCATATTTAGTGGATTTATTGCTAACTTTTAGGGGTAATGGCTGTATCTGCTCTCATCTCTCCTATGCTGATTGTTATTGATCCTTTTACTTGAGCCTAGAAGTTCCTCACTCTGGTGAAAGGATTCATCATGGTTTGAGATTAATTTGCAGGTGATGATGTACGGCCCACAACGTTCTCCATGACTAACGCAGAAGACTGGGACAAATTCAGGAGTATTGACATGGATAAAGAGGTTTTGTTTTGGCTTTCATGTTACCATTATAATTTTTATCTTTTTAACTTCGATAGAGTTAAACATTTCTCCTCTTGTTTTTTATATAAGAAACAATTTCATTGATAGACGACATTTACAAAATGGATAGAATCCTTGGTGATTACAAAAGGCTCTCCCAATTGTTTAAAAGGGAAGTGCAGCTACAGGAAGTAAAAAAAACCTTAGGGCTGCTCTTTTCCAAGATTTTTTTGTTGGTTATGTTCCTTCCAAAGAACCCAAAGAAGGGCCTGGGTGATGTGCATTTGAAATTAAAGGGTCATATGATCTTCTTTTTAGGCTAAGCTCATTGGAGTCTTGGAGAACTCATCCGCTAGGAGAAGGGGTCATATCGATGCTGACAAAATGGCTTTCTTGAATGCCTGGCGCAGAATAGAGAGTCGAACAAGAGAGGCACTTCGTCGTAGTTTTCTTCCAGGGCTTGTTGAGAGTTTTGAGGTATGTTTTCGTAGGAGAACTCTGGTCAGAATGTTGGTTGTTCACCAAGTCTAGACGGTTGGGGAGGAGAACGAAGCATTCCTTATATGGGTGTGGAAACCTCTCTCTACCGGACGCATTTTAAAGTCCTTGAGGAGAAGCCCGAAAGGAAAAGTCCAAAGAGGACAATATCTGCTAGCAGTGGGATTGTGCAAGTCCAAAGAGGACAATATCTGCTAGCAGTGGGATTGTGCTTTTCTTCCAGGGCTTGTTGAGAGTTTTGAGGTATGTTTTCGTAGGAGAACTCTGGTCAGAATGTTGGTTGTTCACCGAGTCTAGACGATTGGGGAGGCGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCTCTACCAAACGCGTTTTAAAATCCTTGAGGAGAAGCCCGAAAGGAAAAGTCCGAAGAGGACAATATCTGCTAGCGGTAGGTTTGTGCTGTTACAACTTAATAACTTGGTCTGCATTTTATTTCTTCAGGAATGCATACGATCATTCATCTCAGACTCTAGTAATCAAGACGTCCTAACTTTACGGGTTCAAGATCCTTTCCACAGATTATTGCTGCATGGAGTTTGTGAGGTATTCCCTTCGTGTTCAATTCAAAAAAATGGCTTAATCATGAAATTACAAAACAGTTCACACAAACATGATTCGTTGCAACTTATCTAACCTGAAATGATTCTAATGTGTATAGGATGAAATATAAAAATGAACGGAATAATGGTAAATCGTAGATTTATAACCACGAGAAGCTGTTCGTTCTTTATTCATCTTTTATTTGGCAAACATTTTCTTGGCATCATACGAATCGTTTTTTTTTTTTTGGTAGTTCTACAATCTAGATTCTGCGACTGTTCCCGAGTCGAAGGGCTCTGGCTGTACGAAGATGACTCGGATAACAAGGAAGAAGAAGGCCATGGTTGAGATCCCAAATATAACTCTGACCCATTTTCTTAAGATGTCCAAAGAAGGAACATGGTAACTTCAATCCATTAGGTGAATAAACTTGATAGGCTTTTTCATTGATGTTCATTACAATAAGGATCAAATTATTTAGACGTTTGGTACTGTACAGATGTTGCTTAAATCCTGCTACTGGACTGGCGTGTACTGTAAATTAGCTTAATTGTGCCGTTTATATATCATTTGATCAGGGAAATACGTGTTACAGATATTGTTATCTTTGATCTTTTCTTTTCGATCTTCTTCACGAGGTCTTTTAAATGGATATGTGGATCTGTCAGGGAAATGTTTTCACACTTTTATAAGAAATGTTTTGTTCTCTCTCCAA

mRNA sequence

ATGGCGTCCACTGATGTTCTTAACCAAGAACAGAATCGTTTCACCTTTTCCCCTCTCAGCGATCCAATTAAAGGCGATGAGAATTCTCGGGGTATGTCCATCGAGAAAAAGATTGAATTTCTGGAGAGCTTGACTGGAAAGGTTACTAATAGGAAGTCTCGCAGATGGTTAAACGATCGACTTTTAATGGAGCTTGTTCCTCGTTTGAATGCCGAGGAAATTAGAGGCTTGTTTGCTCCACCGCCTTGGGGTGATGATGTACGGCCCACAACGTTCTCCATGACTAACGCAGAAGACTGGGACAAATTCAGGAGTATTGACATGGATAAAGAGGCTAAGCTCATTGGAGTCTTGGAGAACTCATCCGCTAGGAGAAGGGGTCATATCGATGCTGACAAAATGGCTTTCTTGAATGCCTGGCGCAGAATAGAGAGTCGAACAAGAGAGGCACTTCGTCTTCTACAATCTAGATTCTGCGACTGTTCCCGAGTCGAAGGGCTCTGGCTGTACGAAGATGACTCGGATAACAAGGAAGAAGAAGGCCATGGTTGAGATCCCAAATATAACTCTGACCCATTTTCTTAAGATGTCCAAAGAAGGAACATGGTAACTTCAATCCATTAGGTGAATAAACTTGATAGGCTTTTTCATTGATGTTCATTACAATAAGGATCAAATTATTTAGACGTTTGGTACTGTACAGATGTTGCTTAAATCCTGCTACTGGACTGGCGTGTACTGTAAATTAGCTTAATTGTGCCGTTTATATATCATTTGATCAGGGAAATACGTGTTACAGATATTGTTATCTTTGATCTTTTCTTTTCGATCTTCTTCACGAGGTCTTTTAAATGGATATGTGGATCTGTCAGGGAAATGTTTTCACACTTTTATAAGAAATGTTTTGTTCTCTCTCCAA

Coding sequence (CDS)

ATGGCGTCCACTGATGTTCTTAACCAAGAACAGAATCGTTTCACCTTTTCCCCTCTCAGCGATCCAATTAAAGGCGATGAGAATTCTCGGGGTATGTCCATCGAGAAAAAGATTGAATTTCTGGAGAGCTTGACTGGAAAGGTTACTAATAGGAAGTCTCGCAGATGGTTAAACGATCGACTTTTAATGGAGCTTGTTCCTCGTTTGAATGCCGAGGAAATTAGAGGCTTGTTTGCTCCACCGCCTTGGGGTGATGATGTACGGCCCACAACGTTCTCCATGACTAACGCAGAAGACTGGGACAAATTCAGGAGTATTGACATGGATAAAGAGGCTAAGCTCATTGGAGTCTTGGAGAACTCATCCGCTAGGAGAAGGGGTCATATCGATGCTGACAAAATGGCTTTCTTGAATGCCTGGCGCAGAATAGAGAGTCGAACAAGAGAGGCACTTCGTCTTCTACAATCTAGATTCTGCGACTGTTCCCGAGTCGAAGGGCTCTGGCTGTACGAAGATGACTCGGATAACAAGGAAGAAGAAGGCCATGGTTGA

Protein sequence

MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALRLLQSRFCDCSRVEGLWLYEDDSDNKEEEGHG

Homology

[Close]

BLAST of Carg22192 vs. NCBI nr
Match: XP_022960434.1 (R3H domain-containing protein 4-like [Cucurbita moschata])

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120

Query: 121 SSARRRGHIDADKMAFLNAWRRIESRTREALR 153
           SSARRRGHIDADKMAFLNAWRRIESRTREALR
Sbjct: 121 SSARRRGHIDADKMAFLNAWRRIESRTREALR 152

[Close]

BLAST of Carg22192 vs. NCBI nr
Match: XP_023515083.1 (R3H domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306.2 bits (783), Expect = 7.4e-80
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120

Query: 121 SSARRRGHIDADKMAFLNAWRRIESRTREALR 153
           SSAR++GHIDADKMAFLNAWRRIESRTREALR
Sbjct: 121 SSARKKGHIDADKMAFLNAWRRIESRTREALR 152

[Close]

BLAST of Carg22192 vs. NCBI nr
Match: XP_023004636.1 (R3H domain-containing protein 4-like [Cucurbita maxima])

HSP 1 Score: 304.3 bits (778), Expect = 2.8e-79
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVL+N
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLDN 120

Query: 121 SSARRRGHIDADKMAFLNAWRRIESRTREALR 153
           SSARR+GHI+ADKMAFLNAWRRIESRTREALR
Sbjct: 121 SSARRKGHINADKMAFLNAWRRIESRTREALR 152

[Close]

BLAST of Carg22192 vs. NCBI nr
Match: XP_022150188.1 (uncharacterized protein LOC111018421 isoform X2 [Momordica charantia])

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 138/152 (90.79%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MASTDVL + +NR TFSPL DPIKGD +SRGMSIEKKIEFLESL GKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLKRVENRLTFSPLLDPIKGDADSRGMSIEKKIEFLESLAGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120
           LLMELVPRLNAEE+RGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAK+IGVLEN
Sbjct: 61  LLMELVPRLNAEEVRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVLEN 120

Query: 121 SSARRRGHIDADKMAFLNAWRRIESRTREALR 153
           SSA+R+GHIDADKMAFLNAWRRIE RTREALR
Sbjct: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALR 152

[Close]

BLAST of Carg22192 vs. NCBI nr
Match: XP_022150187.1 (uncharacterized protein LOC111018421 isoform X1 [Momordica charantia])

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 138/152 (90.79%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MASTDVL + +NR TFSPL DPIKGD +SRGMSIEKKIEFLESL GKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLKRVENRLTFSPLLDPIKGDADSRGMSIEKKIEFLESLAGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120
           LLMELVPRLNAEE+RGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAK+IGVLEN
Sbjct: 61  LLMELVPRLNAEEVRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVLEN 120

Query: 121 SSARRRGHIDADKMAFLNAWRRIESRTREALR 153
           SSA+R+GHIDADKMAFLNAWRRIE RTREALR
Sbjct: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALR 152

[Close]

BLAST of Carg22192 vs. TAIR10
Match: AT1G03250.2 (unknown protein)

HSP 1 Score: 195.3 bits (495), Expect = 3.3e-50
Identity = 98/159 (61.64%), Postives = 126/159 (79.25%), Query Frame = 0


Query: 1   MASTDVLNQEQNRFTFSPLSDPIKGDEN-SRGMSIEKKIEFLESLTGKVTNRKSRRWLND 60
           MA+T+V+ +++     S L DP +GD + SRG+S+EKKIE LESL G+V+NR+SRRWLND
Sbjct: 1   MAATNVMRRDE-----SLLIDPQRGDTSVSRGLSLEKKIEALESLAGQVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKE------AK 120
           R+LMELVPRL+A+EIRGLFAPPPWGDDV P+ FS+TN  +WDKFR+IDMDKE      A 
Sbjct: 61  RILMELVPRLDAQEIRGLFAPPPWGDDVPPSAFSLTNVGEWDKFRNIDMDKEELCFFQAN 120

Query: 121 LIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR 153
           ++  L  SS R++G +D DK+A LNAWRRI+ RTR+ALR
Sbjct: 121 IMDSLNRSSVRQKGSVDGDKIAVLNAWRRIDCRTRDALR 154

[Close]

BLAST of Carg22192 vs. TrEMBL
Match: tr|A0A0A0K5V5|A0A0A0K5V5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G393440 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 5.8e-73
Identity = 137/152 (90.13%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MAS DVL +E NRF FSPL+DP+ GD +SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAK+IGV EN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120

Query: 121 SSARRRGHIDADKMAFLNAWRRIESRTREALR 153
           SSA+R+GHIDADKMAFLNAWRRIE RTREALR
Sbjct: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALR 152

[Close]

BLAST of Carg22192 vs. TrEMBL
Match: tr|A0A1S3BS51|A0A1S3BS51_CUCME (uncharacterized protein LOC103492685 OS=Cucumis melo OX=3656 GN=LOC103492685 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.2e-70
Identity = 134/152 (88.16%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MASTDVL +E N F FS  +DP+ GD +SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLKREANPFPFSLPNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAK+IGV EN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120

Query: 121 SSARRRGHIDADKMAFLNAWRRIESRTREALR 153
           SS++R+GHIDADKMAFLNAWRRIE RTREALR
Sbjct: 121 SSSKRKGHIDADKMAFLNAWRRIECRTREALR 152

[Close]

BLAST of Carg22192 vs. TrEMBL
Match: tr|I1L826|I1L826_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100785058 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.9e-56
Identity = 113/161 (70.19%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 6   VLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMEL 65
           VL++E +    SP  DP K D  S GMSIEKKIEFLESLTGKVTNR+SRRWLNDRLLMEL
Sbjct: 2   VLHRELDHLFSSPFVDPPKDDAKSSGMSIEKKIEFLESLTGKVTNRRSRRWLNDRLLMEL 61

Query: 66  VPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLENSSARR 125
           VPRLNAEEIRGLFAPPPWGD+V P+TFSMTN E+WD+FR+IDMDKE  +I  LENS  +R
Sbjct: 62  VPRLNAEEIRGLFAPPPWGDEVPPSTFSMTNMEEWDRFRNIDMDKEVNIIHSLENSIEKR 121

Query: 126 RGHIDADKMAFLNAWRRIESRTREALRLLQSRFCDCSRVEG 167
           +GHIDADKMA LN W RI+ RTR+ALR    R C    +EG
Sbjct: 122 KGHIDADKMAVLNGWHRIDCRTRDALR----RSCLSELIEG 158

[Close]

BLAST of Carg22192 vs. TrEMBL
Match: tr|C6TC35|C6TC35_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.4e-55
Identity = 112/161 (69.57%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 6   VLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMEL 65
           VL++E +    SP  DP K D  S GMSIEKKIEFLESLTGKVTNR+SRRWLNDRLLMEL
Sbjct: 2   VLHRELDHLFSSPFVDPPKDDAKSSGMSIEKKIEFLESLTGKVTNRRSRRWLNDRLLMEL 61

Query: 66  VPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLENSSARR 125
           VPRLNAEEIRGLFAPPPWGD+V P+TF MTN E+WD+FR+IDMDKE  +I  LENS  +R
Sbjct: 62  VPRLNAEEIRGLFAPPPWGDEVPPSTFFMTNMEEWDRFRNIDMDKEVNIIHSLENSIEKR 121

Query: 126 RGHIDADKMAFLNAWRRIESRTREALRLLQSRFCDCSRVEG 167
           +GHIDADKMA LN W RI+ RTR+ALR    R C    +EG
Sbjct: 122 KGHIDADKMAVLNGWHRIDCRTRDALR----RSCLSELIEG 158

[Close]

BLAST of Carg22192 vs. TrEMBL
Match: tr|W9R710|W9R710_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025046 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.6e-54
Identity = 106/153 (69.28%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 1   MASTDVLNQEQNRFTFSPLSDPIKGDE-NSRGMSIEKKIEFLESLTGKVTNRKSRRWLND 60
           MA+ DVL +E++ F  SP  DP KGD   S  +SIEKKIEFLESL GKV+NR+SRRWLND
Sbjct: 1   MATPDVLQREEDLFLSSPFLDPRKGDNAKSLDLSIEKKIEFLESLAGKVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLE 120
           RLLMELVPRLNAEEIRGLFAPPPWGDDV P+ F+MTN  +WDKFR+IDMD+EA ++G L 
Sbjct: 61  RLLMELVPRLNAEEIRGLFAPPPWGDDVPPSPFAMTNGGEWDKFRNIDMDREADIMGALR 120

Query: 121 NSSARRRGHIDADKMAFLNAWRRIESRTREALR 153
           +S A+R+ H+D++KMA LNAWRR++ RTREALR
Sbjct: 121 SSPAKRKDHVDSNKMAVLNAWRRVDCRTREALR 153

The following BLAST results are available for this feature:

BLAST of Carg22192 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960434.1	1.5e-80	100.00	R3H domain-containing protein 4-like [Cucurbita moschata]	[more]
XP_023515083.1	7.4e-80	98.68	R3H domain-containing protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004636.1	2.8e-79	98.03	R3H domain-containing protein 4-like [Cucurbita maxima]	[more]
XP_022150188.1	2.3e-73	90.79	uncharacterized protein LOC111018421 isoform X2 [Momordica charantia]	[more]
XP_022150187.1	2.3e-73	90.79	uncharacterized protein LOC111018421 isoform X1 [Momordica charantia]	[more]

BLAST of Carg22192 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03250.2	3.3e-50	61.64	unknown protein	[more]

BLAST of Carg22192 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22192 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5V5\|A0A0A0K5V5_CUCSA	5.8e-73	90.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G393440 PE=4 SV=1	[more]
tr\|A0A1S3BS51\|A0A1S3BS51_CUCME	1.2e-70	88.16	uncharacterized protein LOC103492685 OS=Cucumis melo OX=3656 GN=LOC103492685 PE=...	[more]
tr\|I1L826\|I1L826_SOYBN	2.9e-56	70.19	Uncharacterized protein OS=Glycine max OX=3847 GN=100785058 PE=4 SV=1	[more]
tr\|C6TC35\|C6TC35_SOYBN	1.4e-55	69.57	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
tr\|W9R710\|W9R710_9ROSA	1.6e-54	69.28	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025046 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025952	R3H-assoc_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22192-RA	Carg22192-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025952	R3H-associated N-terminal domain	PFAM	PF13902	R3H-assoc	coord: 33..152 e-value: 2.1E-27 score: 96.0
None	No IPR available	PANTHER	PTHR32019	FAMILY NOT NAMED	coord: 4..158

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22192	Cla014750	Watermelon (97103) v1	carwmB0861
Carg22192	Csa7G393440	Cucumber (Chinese Long) v2	carcuB0875
Carg22192	MELO3C015851	Melon (DHL92) v3.5.1	carmeB0849
Carg22192	ClCG09G006940	Watermelon (Charleston Gray)	carwcgB0833
Carg22192	CSPI07G16900	Wild cucumber (PI 183967)	carcpiB0895
Carg22192	CmaCh17G011660	Cucurbita maxima (Rimu)	carcmaB1191
Carg22192	CmaCh08G003570	Cucurbita maxima (Rimu)	carcmaB1192
Carg22192	CmoCh17G011410	Cucurbita moschata (Rifu)	carcmoB1160
Carg22192	CmoCh08G003540	Cucurbita moschata (Rifu)	carcmoB1161
Carg22192	Lsi02G023040	Bottle gourd (USVL1VR-Ls)	carlsiB782
Carg22192	Cp4.1LG17g06610	Cucurbita pepo (Zucchini)	carcpeB1200
Carg22192	Cp4.1LG12g11810	Cucurbita pepo (Zucchini)	carcpeB1198
Carg22192	CsGy7G015370	Cucumber (Gy14) v2	carcgybB0849
Carg22192	MELO3C015851.2	Melon (DHL92) v3.6.1	carmedB0860
Carg22192	CsaV3_7G028660	Cucumber (Chinese Long) v3	carcucB0899
Carg22192	Cla97C09G169520	Watermelon (97103) v2	carwmbB0897
Carg22192	Bhi09G000853	Wax gourd	carwgoB1004

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22192	Carg07239	Silver-seed gourd	carcarB135

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22192	Cucurbita pepo (Zucchini)	carcpeB1201