Cp4.1LG12g11810 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g11810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionR3H-associated amino-terminal domain protein
LocationCp4.1LG12 : 8484544 .. 8488444 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGCGGTGAGCGGCGGAGAAAGACGCTTTCTCAATCCCATTTGAAAGAGAATACTCTTCCGTATCGAATCCTTCTCTCGGTTGCTCTTGCAATTTCTAACGCTCTGTTCGTTCCTCCTTTTCGAAGCCTTGGATTCGATTTTGCGCTACTGTTCTGATCTCCCTCATCTTCACCTTTTGCCGATTCTCCCTTTCCGTCTCCGAACAAGATTTTCAATCCCATCCACGGAGCAGAAGCACGAGTAGAGCTTCGATCAGATTCTCTGTTTTCCACTCCAATCATGGCGACCACTGATGTTCTTAAACGACATGAGAATCGCTTTACATTTTCCTCTCTCAGTGATCCACTCAAAGGTACTTCTTCTCTTTTGTTAATCATATCTGCTTATTGATAAAGGATCCGGTATGTAGATTTAGTTATACCCGGAATGATTTTTCCTGTTTCAGTTATATGATTTTGACATGTTCTTTGGGATTTATATTTCTCTCAGTCGTCTTATTGAGTTAATTTCCCAGGTGATATGGATTCTCGGGATATGTCAATTGAGAAGAAGATAGAATTTCTGGAGAGCTTAACAGGGAAGGTGAGGGTGTTTGGAAGTGTTGCAAATGTTCTTCTTAGGCCATAATGATCTCCATCAGGACTGTTCTGTGAGCTGTTTACTTGTATTGATTATAGCTTTGTTAATGCGACATGATGCTTTTGCAATGTGCTTGGGATGAAATAGAAGTGCACTGCTTAATTGGGGATATTATGGATATCAATCTAAGTGTTTGTTTCCTTTTGTGTTGTATGCTAATGTGAATGGCTCCATTTTAAGGGAAAACTAGTAACCTCTCCTGGTCATTTTCTCAAGGGTCACCTTTTCAATTTTATTTGGAGTCGTCTTCGTGTGGCAAGGTTGTCAAGTAGTTGTTTTCTGTTCTCTAATTTGAAGTTGGAATTCCATCAAAACTATTCATCTCGACGCTTAAATGTGCTACCTAGTGATACCAGTGACAACTCTCTTATTATATGAGGTAAAAAAGTGCATATCGTTTGTATTATTTGCTGGTGTTCATATTGTTATCACCTCCCAACAACTTATTAAAATGCTCCTGTTTAAGAAAACTAGCTTTTCCCCCCAATGATAAATAAATACTGTAGTTTCCTATTTAATTTTTGCTAGTCTTTGTCCACGGCAACTCGCTTTTTCTGTTAACTTCTAACGTTTTTTCCTTACTCTTTTCAGGTTACTAATAGGAAGACTCGTAGATGGTTAAATGATCGTCTTTTGATGGAGCTTGTTCCTCGTTTGAATGCTGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTGGGGTGTGATACGTATAAAGACTTTGTTCTTTTCGTAACTATGCAAGCTGTGATTAGAGTTATTTCTGAATAATATAAATGCTAGATGTTTCAGAAGGTAGAGCCTTCTTTTGTTCATCACCTTGTGTTATGTTATGCTTTAGGATTTGAGGTAAGGCATCAAAGTAGCTGTTCTTTTGATATCCCCCTAGGGAATCTATACGAGAGAAGGCACGTGAGGAAAGAGAGTCGAGATTGATTTTGTAACTAGTTGGTTGGGGGGCTGAAGACTTAGGCGAGGAAGGCTTACTTAGTGAAAGGAGGGAGATGTAAGAGATACATTTTCTGGATGGTCTTTAATTTCGGCATCCTTGGGAGCGAGGGGAAGCTTTATAATTCTTCGCAACTCGTTAAGACAGGAGAATTCAAAAACCCCTCCTCTCTCGAAAGACCATCAGAACCTTTCTAACACCTTTTTTTTTAATAGGAATTAGAAAACATATCATTGATATGATGAAAGAAATGCATACAAAAAACAAAATCCTATAAAAAATAATTACAAGAGACAAAAGTTCCTACCGTACACGTATACTTTATGAACATTGAAGATATTATTATGCATATAGTGATCTAGACTATGATATATAAACCCTAAGAGTTCTCAGTAAACTTCCAATTGATCAGTTACTAAACTTAGCACCTGTTAGAAGTAGTAGCTATTTTGAATGGCTTAATAATGTAAGTGTTGCATTTGCCAAGTCATATCTAGTGGCTTTACTATTAATTCCTTGAGGGAAGGGCTATATCTTCTCATCTAGTCTATGCTAACTTTTATCGATCCCTTTACTCGAGCCTAGAAATTCCTCACCCTGGTGAAAGGATTCATCATGGTTTGAGGTTACTTTGCAGGTGACGATGTACGGCCCACAACATTCTCCATGACTAATGCAGGAGACTGGGACAAATTTAGGAGTATTGACATGGATAAAGAGGTCTTTGTACTTTTCACTTTAATGTTACCCTTTTGATTTTTGTGAACCTCAGTACAGCTGAATGTTTCGGAAATTAAAGAACGGTAAAGCAGATGCCTAATCTAAGAACATAATCCAATTATGTAAGTTTCTTGTTAGGCTAAGTTCATTGGAGTCTTGGAGAACTCATCCATTAAGAGAAAGGGTCATATTGATGCAGACAAAGTGGCTTTCTTGAATGCCTGGCGCAGAATTGAGTGTCAAACGAGAGAGGCACTTCGCCGTAGCTTTCTTCCAGAGCTTGTCGAAGCTTTTGAGGTATGTATGTGTAGAAAAAGTCATCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTCCTGCATTTACTGGATGATTAATATGGTAGGTTAAGCTTTTTCTCCATCTTTAAAACATTGTTTTTACGTGATCGCGAATCTGAATGTTTGTTGAAGAGTGGCAACTAGCAAGGCATCAATCAAGTTAACTTATAATTTGGTAATAAGTTTCTTGCATTTTTGTTTTTCAGAATAGCATAAGATCATTCGTTTTGGACGGTAGTAAAGAAGATGTCCTAACGTTGCGGGTTCGAGACCCATTCCACAGATTATTGCTACATGGAGTTTGTGAGGTATTTCCTCCGGGTTTAAGTTTAAGGAAATAAGCATGCTCAACCATGAGATCCGAAATATACTTCATAGTTCATACAACCTGATTCACTGTAACTTATCCGAAAAAATAAAAGCCGTTGAAATTTACACAAACTGCTCTTATTTACATCTATACGTTAAAGGACATATTAATCTCAAAATTTTGATAGGTTGAAATACCATTTTAGTCTATGTACTTTGAGTTTCATTTCATTTTAGTCTCGTTACTTTCAAATATCTTAATTTAGGTCCTACTCCTAATAAATCTTAAAACTTGTCCCTATGTACTCTGAGACAACACTCTCGATTAAAAGAGGTAAGAGGTTTGAGTCTTCCCAGTCGTTGTACTATTTTGTACATTTAGTCTGAATAAGCTAAATATTTGGCTGAATCATTTTGACATCATGCAAATTGTTTTCTTGGTAGTTCTACAATTTGGACTCTGTGACAGTTCCCGAGTTGAAGAACGGCAGCTCTACGAAGATGACTCGGGTAACAAGGAAGAAGAAGGCCTTGGTCGAGATCCCAAATATTACTCTGACCCATTTTCTAAAAATGTCCAAAGAAGGAACATGGTAATTTCGATTCATTAGGTAAAGAAACTCGATAGCTATAAATTAATGCTCGTTACGATAATATCAAATGTATATTTAGAGTGTAGGTAGTGTAGAGTTGCTCAAATTCTGCTGCTGGACACTCATTCTTTTGGCACCAATTGTACCATTAGTATCATTTGAATAGATAAATGCCTTGTTTCTTATTCAAAAACTGCCTTCCTTCTCTTAGTTCGATCGGGTTCGACCAAGTATTATTAGGGCGTTGATCGATAAGTGTGGCTGAAATTGTGGGCAAATGATGAATTGTTCTTGTGATGAAAGATTGTGGATTGATCGAATTAATGTAGATGAGATGAATTTTTAATCATAAAGTTCTGCACAAA

mRNA sequence

CGGCGGTGAGCGGCGGAGAAAGACGCTTTCTCAATCCCATTTGAAAGAGAATACTCTTCCGTATCGAATCCTTCTCTCGGTTGCTCTTGCAATTTCTAACGCTCTGTTCGTTCCTCCTTTTCGAAGCCTTGGATTCGATTTTGCGCTACTGTTCTGATCTCCCTCATCTTCACCTTTTGCCGATTCTCCCTTTCCGTCTCCGAACAAGATTTTCAATCCCATCCACGGAGCAGAAGCACGAGTAGAGCTTCGATCAGATTCTCTGTTTTCCACTCCAATCATGGCGACCACTGATGTTCTTAAACGACATGAGAATCGCTTTACATTTTCCTCTCTCAGTGATCCACTCAAAGGTGATATGGATTCTCGGGATATGTCAATTGAGAAGAAGATAGAATTTCTGGAGAGCTTAACAGGGAAGGTTACTAATAGGAAGACTCGTAGATGGTTAAATGATCGTCTTTTGATGGAGCTTGTTCCTCGTTTGAATGCTGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTGGGGTGTGATACGTGACGATGTACGGCCCACAACATTCTCCATGACTAATGCAGGAGACTGGGACAAATTTAGGAGTATTGACATGGATAAAGAGGCTAAGTTCATTGGAGTCTTGGAGAACTCATCCATTAAGAGAAAGGGTCATATTGATGCAGACAAAGTGGCTTTCTTGAATGCCTGGCGCAGAATTGAGTGTCAAACGAGAGAGGCACTTCGCCGTAGCTTTCTTCCAGAGCTTGTCGAAGCTTTTGAGAATAGCATAAGATCATTCGTTTTGGACGGTAGTAAAGAAGATGTCCTAACGTTGCGGGTTCGAGACCCATTCCACAGATTATTGCTACATGGAGTTTGTGAGTTCTACAATTTGGACTCTGTGACAGTTCCCGAGTTGAAGAACGGCAGCTCTACGAAGATGACTCGGGTAACAAGGAAGAAGAAGGCCTTGGTCGAGATCCCAAATATTACTCTGACCCATTTTCTAAAAATGTCCAAAGAAGGAACATGGTAATTTCGATTCATTAGGTAAAGAAACTCGATAGCTATAAATTAATGCTCGTTACGATAATATCAAATGTATATTTAGAGTGTAGGTAGTGTAGAGTTGCTCAAATTCTGCTGCTGGACACTCATTCTTTTGGCACCAATTGTACCATTAGTATCATTTGAATAGATAAATGCCTTGTTTCTTATTCAAAAACTGCCTTCCTTCTCTTAGTTCGATCGGGTTCGACCAAGTATTATTAGGGCGTTGATCGATAAGTGTGGCTGAAATTGTGGGCAAATGATGAATTGTTCTTGTGATGAAAGATTGTGGATTGATCGAATTAATGTAGATGAGATGAATTTTTAATCATAAAGTTCTGCACAAA

Coding sequence (CDS)

ATGGCGACCACTGATGTTCTTAAACGACATGAGAATCGCTTTACATTTTCCTCTCTCAGTGATCCACTCAAAGGTGATATGGATTCTCGGGATATGTCAATTGAGAAGAAGATAGAATTTCTGGAGAGCTTAACAGGGAAGGTTACTAATAGGAAGACTCGTAGATGGTTAAATGATCGTCTTTTGATGGAGCTTGTTCCTCGTTTGAATGCTGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTGGGGTGTGATACGTGACGATGTACGGCCCACAACATTCTCCATGACTAATGCAGGAGACTGGGACAAATTTAGGAGTATTGACATGGATAAAGAGGCTAAGTTCATTGGAGTCTTGGAGAACTCATCCATTAAGAGAAAGGGTCATATTGATGCAGACAAAGTGGCTTTCTTGAATGCCTGGCGCAGAATTGAGTGTCAAACGAGAGAGGCACTTCGCCGTAGCTTTCTTCCAGAGCTTGTCGAAGCTTTTGAGAATAGCATAAGATCATTCGTTTTGGACGGTAGTAAAGAAGATGTCCTAACGTTGCGGGTTCGAGACCCATTCCACAGATTATTGCTACATGGAGTTTGTGAGTTCTACAATTTGGACTCTGTGACAGTTCCCGAGTTGAAGAACGGCAGCTCTACGAAGATGACTCGGGTAACAAGGAAGAAGAAGGCCTTGGTCGAGATCCCAAATATTACTCTGACCCATTTTCTAAAAATGTCCAAAGAAGGAACATGGTAA

Protein sequence

MATTDVLKRHENRFTFSSLSDPLKGDMDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSKEDVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKALVEIPNITLTHFLKMSKEGTW
Homology
[Close]
BLAST of Cp4.1LG12g11810 vs. TrEMBL
Match: A0A0A0K5V5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G393440 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 3.5e-115
Identity = 209/251 (83.27%), Postives = 222/251 (88.45%), Query Frame = 1 

Query: 1   MATTDVLKRHENRFTFSSLSDPLKGDMDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60
           MA+ DVL+R  NRF FS L+DPL GD DSR MSIEKKIEFLESLTGKVTNRK+RRWLNDR
Sbjct: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGV 120
           LLMELVPRLNAEEIRGLFAPPPWG   DDVRPTTFSMTNA DWDKFRSIDMDKEAK IGV
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWG---DDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGV 120

Query: 121 LENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSKE 180
            ENSS KRKGHIDADK+AFLNAWRRIEC+TREALRRSF  ELVE +E  IRSF+ D  KE
Sbjct: 121 FENSSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKE 180

Query: 181 DVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKALVEIPNITLT 240
           DVL +RV+DPFHRLLLHGVCEFYNLDSVTV E KN  S KMTR+TRKKKA+VE+PNITLT
Sbjct: 181 DVLIMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLT 240

Query: 241 HFLKMSKEGTW 252
           HFLKMSKEGTW
Sbjct: 241 HFLKMSKEGTW 248

[Close]
BLAST of Cp4.1LG12g11810 vs. TrEMBL
Match: W9R710_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025046 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 6.4e-93
Identity = 168/252 (66.67%), Postives = 206/252 (81.75%), Query Frame = 1 

Query: 1   MATTDVLKRHENRFTFSSLSDPLKGD-MDSRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MAT DVL+R E+ F  S   DP KGD   S D+SIEKKIEFLESL GKV+NR++RRWLND
Sbjct: 1   MATPDVLQREEDLFLSSPFLDPRKGDNAKSLDLSIEKKIEFLESLAGKVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIG 120
           RLLMELVPRLNAEEIRGLFAPPPWG   DDV P+ F+MTN G+WDKFR+IDMD+EA  +G
Sbjct: 61  RLLMELVPRLNAEEIRGLFAPPPWG---DDVPPSPFAMTNGGEWDKFRNIDMDREADIMG 120

Query: 121 VLENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSK 180
            L +S  KRK H+D++K+A LNAWRR++C+TREALRRS L EL+E +E  IR+++ D  +
Sbjct: 121 ALRSSPAKRKDHVDSNKMAVLNAWRRVDCRTREALRRSSLLELIEGYEECIRAYITDSGE 180

Query: 181 EDVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKALVEIPNITL 240
           E+ L LRV+DPFHRLLLHGVCEFYNL SVTV + ++  S+K TR+T+KKK+ VEIP+ITL
Sbjct: 181 EETLILRVQDPFHRLLLHGVCEFYNLASVTVKQSEDAESSKTTRITKKKKSRVEIPSITL 240

Query: 241 THFLKMSKEGTW 252
           +HFL+MSKEG W
Sbjct: 241 SHFLRMSKEGVW 249

[Close]
BLAST of Cp4.1LG12g11810 vs. TrEMBL
Match: A0A067JN89_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21956 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.6e-88
Identity = 167/252 (66.27%), Postives = 197/252 (78.17%), Query Frame = 1 

Query: 1   MATTDVLKRHENRFTFSSLSDPLKGDM-DSRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MATT+VL+  E     S L DP K D   SR +SIEKKIEFLESLTGKV+NR++RRW+ND
Sbjct: 1   MATTEVLQLIEEGLVSSRLLDPTKADTAKSRGLSIEKKIEFLESLTGKVSNRRSRRWIND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIG 120
           RLLMELVPRLNAEEIRGLFAPPPWG   DDV  + F MTN G+W+KFR+IDMDK+A  I 
Sbjct: 61  RLLMELVPRLNAEEIRGLFAPPPWG---DDVPLSPFCMTNVGEWEKFRNIDMDKQAHIID 120

Query: 121 VLENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSK 180
            L   S KR+G +DADKVA LNAWRRI+ +TREALRRSFL +L+E +E  IR+F+ +   
Sbjct: 121 ALNTPSTKRRGRVDADKVAVLNAWRRIDSRTREALRRSFLTDLIEGYEACIRTFIQESGD 180

Query: 181 EDVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKALVEIPNITL 240
           E+VL L+V+DPFHRLLLHGVCEFYNL SVTV E K+  S K TR+ +KK   VE+PNITL
Sbjct: 181 EEVLALQVQDPFHRLLLHGVCEFYNLVSVTVMESKDRESLKTTRIKKKKMGAVELPNITL 240

Query: 241 THFLKMSKEGTW 252
           +HFLKMSKEG W
Sbjct: 241 SHFLKMSKEGVW 249

[Close]
BLAST of Cp4.1LG12g11810 vs. TrEMBL
Match: A0A0D2RVH5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G082300 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.1e-88
Identity = 164/252 (65.08%), Postives = 200/252 (79.37%), Query Frame = 1 

Query: 1   MATTDVLKRHENRFTFSSLSDPLKGDMD-SRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MAT  VL+R  +    S L +  KG+   SR +SIEKKIE LESLTGKVTNR++RRWLND
Sbjct: 1   MATPGVLQRETDLLLSSPLIELRKGENGKSRGLSIEKKIELLESLTGKVTNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIG 120
           RLLMELVPRLNAEE+RGLFAPPPWG   DDV P+ F MTN G+WDKFR+IDMDKEA  IG
Sbjct: 61  RLLMELVPRLNAEEVRGLFAPPPWG---DDVPPSAFCMTNVGEWDKFRTIDMDKEANIIG 120

Query: 121 VLENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSK 180
            L NSS+K+K H DADK AFL+AW R++C+TREALRRSFL +L+ ++E+ IR+F+ +   
Sbjct: 121 ALNNSSMKKKFHADADKAAFLSAWLRVDCRTREALRRSFLSDLIASYEDCIRTFIQERGH 180

Query: 181 EDVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKALVEIPNITL 240
            DVL L+V+DPFHRLLLHGVCEFYN+ SVTV + K   S K+TR+ +KK  +VE+PNITL
Sbjct: 181 GDVLALQVQDPFHRLLLHGVCEFYNVVSVTVTQSKGAESLKVTRIKKKKTGVVELPNITL 240

Query: 241 THFLKMSKEGTW 252
           ++FLKMSKEG W
Sbjct: 241 SNFLKMSKEGIW 249

[Close]
BLAST of Cp4.1LG12g11810 vs. TrEMBL
Match: V4TAL3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021857mg PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 4.0e-87
Identity = 162/252 (64.29%), Postives = 195/252 (77.38%), Query Frame = 1 

Query: 1   MATTDVLKRHENRFTFSSLSDPLKGD-MDSRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MAT D+++R ++      L DP KG+   SR MSIEKKIEFLESLTG V+NR++RRWLND
Sbjct: 1   MATPDIMEREQDFLLSPPLLDPSKGEGAKSRGMSIEKKIEFLESLTGNVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIG 120
           RLLMELVPRL+A+EIRGLFAPPPWG   D V P+ F MTN G+WDKFR+IDMDKEA  I 
Sbjct: 61  RLLMELVPRLDADEIRGLFAPPPWG---DKVPPSPFCMTNYGEWDKFRNIDMDKEANIIK 120

Query: 121 VLENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSK 180
            L  S++KRK H+D DK+A LNAWRRI+C+TR+A RRS+LPEL+E FE  IR+F+ +   
Sbjct: 121 ALNGSTLKRKCHVDTDKIAVLNAWRRIDCRTRDAFRRSYLPELIEGFEVCIRAFIEESKD 180

Query: 181 EDVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKALVEIPNITL 240
            D L LRV+D FHRLLLHGVCEFYNL SVTV E K+  S KMTR+ +KKK   EIP ITL
Sbjct: 181 ADELVLRVQDSFHRLLLHGVCEFYNLVSVTVTESKDEESLKMTRIKKKKKGSAEIPRITL 240

Query: 241 THFLKMSKEGTW 252
           + FL++SKEG W
Sbjct: 241 SQFLRLSKEGIW 249

[Close]
BLAST of Cp4.1LG12g11810 vs. TAIR10
Match: AT1G03250.2 (AT1G03250.2 unknown protein)

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-80
Identity = 151/259 (58.30%), Postives = 192/259 (74.13%), Query Frame = 1 

Query: 1   MATTDVLKRHENRFTFSSLSDPLKGDMD-SRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MA T+V++R E     S L DP +GD   SR +S+EKKIE LESL G+V+NR++RRWLND
Sbjct: 1   MAATNVMRRDE-----SLLIDPQRGDTSVSRGLSLEKKIEALESLAGQVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKE----- 120
           R+LMELVPRL+A+EIRGLFAPPPWG   DDV P+ FS+TN G+WDKFR+IDMDKE     
Sbjct: 61  RILMELVPRLDAQEIRGLFAPPPWG---DDVPPSAFSLTNVGEWDKFRNIDMDKEELCFF 120

Query: 121 -AKFIGVLENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSF 180
            A  +  L  SS+++KG +D DK+A LNAWRRI+C+TR+ALRRSFLPEL+E +E+ I  F
Sbjct: 121 QANIMDSLNRSSVRQKGSVDGDKIAVLNAWRRIDCRTRDALRRSFLPELIEGYESCISHF 180

Query: 181 VLDGSKEDVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKA-LV 240
           + +G + DVL L+V+DPFHRLLLHGVCE++NL S T  E     + K T +  KK     
Sbjct: 181 IEEGGEGDVLELKVQDPFHRLLLHGVCEYHNLVSTTATEQIGRIAMKTTSIKWKKSGDSG 240

Query: 241 EIPNITLTHFLKMSKEGTW 252
           E P+I+L HFL+MSKEG W
Sbjct: 241 EKPSISLAHFLRMSKEGAW 251

[Close]
BLAST of Cp4.1LG12g11810 vs. NCBI nr
Match: gi|659100999|ref|XP_008451376.1| (PREDICTED: uncharacterized protein LOC103492685 [Cucumis melo])

HSP 1 Score: 424.5 bits (1090), Expect = 1.3e-115
Identity = 211/251 (84.06%), Postives = 223/251 (88.84%), Query Frame = 1 

Query: 1   MATTDVLKRHENRFTFSSLSDPLKGDMDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60
           MA+TDVLKR  N F FS  +DPL GD DSR MSIEKKIEFLESLTGKVTNRK+RRWLNDR
Sbjct: 1   MASTDVLKREANPFPFSLPNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGV 120
           LLMELVPRLNAEEIRGLFAPPPWG   DDVRPTTFSMTNA DWDKFRSIDMDKEAK IGV
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWG---DDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGV 120

Query: 121 LENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSKE 180
            ENSS KRKGHIDADK+AFLNAWRRIEC+TREALRRSF  ELVE +E SIRSF+ D  KE
Sbjct: 121 FENSSSKRKGHIDADKMAFLNAWRRIECRTREALRRSFRAELVEGYEESIRSFISDTCKE 180

Query: 181 DVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKALVEIPNITLT 240
           DVL +RV+DPFHRLLLHGVCEFYNLDSVTV E KN  STKMTR+TRKKKA+VE+PNITLT
Sbjct: 181 DVLIMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNKGSTKMTRITRKKKAMVEVPNITLT 240

Query: 241 HFLKMSKEGTW 252
           HFLKMSKEGTW
Sbjct: 241 HFLKMSKEGTW 248

[Close]
BLAST of Cp4.1LG12g11810 vs. NCBI nr
Match: gi|778727880|ref|XP_011659335.1| (PREDICTED: uncharacterized protein LOC101217014 [Cucumis sativus])

HSP 1 Score: 422.5 bits (1085), Expect = 5.0e-115
Identity = 209/251 (83.27%), Postives = 222/251 (88.45%), Query Frame = 1 

Query: 1   MATTDVLKRHENRFTFSSLSDPLKGDMDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60
           MA+ DVL+R  NRF FS L+DPL GD DSR MSIEKKIEFLESLTGKVTNRK+RRWLNDR
Sbjct: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGV 120
           LLMELVPRLNAEEIRGLFAPPPWG   DDVRPTTFSMTNA DWDKFRSIDMDKEAK IGV
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWG---DDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGV 120

Query: 121 LENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSKE 180
            ENSS KRKGHIDADK+AFLNAWRRIEC+TREALRRSF  ELVE +E  IRSF+ D  KE
Sbjct: 121 FENSSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKE 180

Query: 181 DVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKALVEIPNITLT 240
           DVL +RV+DPFHRLLLHGVCEFYNLDSVTV E KN  S KMTR+TRKKKA+VE+PNITLT
Sbjct: 181 DVLIMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLT 240

Query: 241 HFLKMSKEGTW 252
           HFLKMSKEGTW
Sbjct: 241 HFLKMSKEGTW 248

[Close]
BLAST of Cp4.1LG12g11810 vs. NCBI nr
Match: gi|703076623|ref|XP_010090381.1| (hypothetical protein L484_025046 [Morus notabilis])

HSP 1 Score: 348.6 bits (893), Expect = 9.1e-93
Identity = 168/252 (66.67%), Postives = 206/252 (81.75%), Query Frame = 1 

Query: 1   MATTDVLKRHENRFTFSSLSDPLKGD-MDSRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MAT DVL+R E+ F  S   DP KGD   S D+SIEKKIEFLESL GKV+NR++RRWLND
Sbjct: 1   MATPDVLQREEDLFLSSPFLDPRKGDNAKSLDLSIEKKIEFLESLAGKVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIG 120
           RLLMELVPRLNAEEIRGLFAPPPWG   DDV P+ F+MTN G+WDKFR+IDMD+EA  +G
Sbjct: 61  RLLMELVPRLNAEEIRGLFAPPPWG---DDVPPSPFAMTNGGEWDKFRNIDMDREADIMG 120

Query: 121 VLENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSK 180
            L +S  KRK H+D++K+A LNAWRR++C+TREALRRS L EL+E +E  IR+++ D  +
Sbjct: 121 ALRSSPAKRKDHVDSNKMAVLNAWRRVDCRTREALRRSSLLELIEGYEECIRAYITDSGE 180

Query: 181 EDVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKALVEIPNITL 240
           E+ L LRV+DPFHRLLLHGVCEFYNL SVTV + ++  S+K TR+T+KKK+ VEIP+ITL
Sbjct: 181 EETLILRVQDPFHRLLLHGVCEFYNLASVTVKQSEDAESSKTTRITKKKKSRVEIPSITL 240

Query: 241 THFLKMSKEGTW 252
           +HFL+MSKEG W
Sbjct: 241 SHFLRMSKEGVW 249

[Close]
BLAST of Cp4.1LG12g11810 vs. NCBI nr
Match: gi|802792903|ref|XP_012092276.1| (PREDICTED: R3H domain-containing protein 4 [Jatropha curcas])

HSP 1 Score: 334.0 bits (855), Expect = 2.3e-88
Identity = 167/252 (66.27%), Postives = 197/252 (78.17%), Query Frame = 1 

Query: 1   MATTDVLKRHENRFTFSSLSDPLKGDM-DSRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MATT+VL+  E     S L DP K D   SR +SIEKKIEFLESLTGKV+NR++RRW+ND
Sbjct: 1   MATTEVLQLIEEGLVSSRLLDPTKADTAKSRGLSIEKKIEFLESLTGKVSNRRSRRWIND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIG 120
           RLLMELVPRLNAEEIRGLFAPPPWG   DDV  + F MTN G+W+KFR+IDMDK+A  I 
Sbjct: 61  RLLMELVPRLNAEEIRGLFAPPPWG---DDVPLSPFCMTNVGEWEKFRNIDMDKQAHIID 120

Query: 121 VLENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSK 180
            L   S KR+G +DADKVA LNAWRRI+ +TREALRRSFL +L+E +E  IR+F+ +   
Sbjct: 121 ALNTPSTKRRGRVDADKVAVLNAWRRIDSRTREALRRSFLTDLIEGYEACIRTFIQESGD 180

Query: 181 EDVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKALVEIPNITL 240
           E+VL L+V+DPFHRLLLHGVCEFYNL SVTV E K+  S K TR+ +KK   VE+PNITL
Sbjct: 181 EEVLALQVQDPFHRLLLHGVCEFYNLVSVTVMESKDRESLKTTRIKKKKMGAVELPNITL 240

Query: 241 THFLKMSKEGTW 252
           +HFLKMSKEG W
Sbjct: 241 SHFLKMSKEGVW 249

[Close]
BLAST of Cp4.1LG12g11810 vs. NCBI nr
Match: gi|823148079|ref|XP_012473947.1| (PREDICTED: uncharacterized protein LOC105790746 [Gossypium raimondii])

HSP 1 Score: 333.6 bits (854), Expect = 3.0e-88
Identity = 164/252 (65.08%), Postives = 200/252 (79.37%), Query Frame = 1 

Query: 1   MATTDVLKRHENRFTFSSLSDPLKGDMD-SRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MAT  VL+R  +    S L +  KG+   SR +SIEKKIE LESLTGKVTNR++RRWLND
Sbjct: 1   MATPGVLQRETDLLLSSPLIELRKGENGKSRGLSIEKKIELLESLTGKVTNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGVIRDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIG 120
           RLLMELVPRLNAEE+RGLFAPPPWG   DDV P+ F MTN G+WDKFR+IDMDKEA  IG
Sbjct: 61  RLLMELVPRLNAEEVRGLFAPPPWG---DDVPPSAFCMTNVGEWDKFRTIDMDKEANIIG 120

Query: 121 VLENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSK 180
            L NSS+K+K H DADK AFL+AW R++C+TREALRRSFL +L+ ++E+ IR+F+ +   
Sbjct: 121 ALNNSSMKKKFHADADKAAFLSAWLRVDCRTREALRRSFLSDLIASYEDCIRTFIQERGH 180

Query: 181 EDVLTLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTRVTRKKKALVEIPNITL 240
            DVL L+V+DPFHRLLLHGVCEFYN+ SVTV + K   S K+TR+ +KK  +VE+PNITL
Sbjct: 181 GDVLALQVQDPFHRLLLHGVCEFYNVVSVTVTQSKGAESLKVTRIKKKKTGVVELPNITL 240

Query: 241 THFLKMSKEGTW 252
           ++FLKMSKEG W
Sbjct: 241 SNFLKMSKEGIW 249

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g11810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g11810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5V5_CUCSA3.5e-11583.27Uncharacterized protein OS=Cucumis sativus GN=Csa_7G393440 PE=4 SV=1[more]
W9R710_9ROSA6.4e-9366.67Uncharacterized protein OS=Morus notabilis GN=L484_025046 PE=4 SV=1[more]
A0A067JN89_JATCU1.6e-8866.27Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21956 PE=4 SV=1[more]
A0A0D2RVH5_GOSRA2.1e-8865.08Uncharacterized protein OS=Gossypium raimondii GN=B456_004G082300 PE=4 SV=1[more]
V4TAL3_9ROSI4.0e-8764.29Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021857mg PE=4 SV=1[more]
BLAST of Cp4.1LG12g11810 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03250.21.5e-8058.30 unknown protein[more]
BLAST of Cp4.1LG12g11810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659100999|ref|XP_008451376.1|1.3e-11584.06PREDICTED: uncharacterized protein LOC103492685 [Cucumis melo][more]
gi|778727880|ref|XP_011659335.1|5.0e-11583.27PREDICTED: uncharacterized protein LOC101217014 [Cucumis sativus][more]
gi|703076623|ref|XP_010090381.1|9.1e-9366.67hypothetical protein L484_025046 [Morus notabilis][more]
gi|802792903|ref|XP_012092276.1|2.3e-8866.27PREDICTED: R3H domain-containing protein 4 [Jatropha curcas][more]
gi|823148079|ref|XP_012473947.1|3.0e-8865.08PREDICTED: uncharacterized protein LOC105790746 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR025952R3H-assoc_dom
IPR001374R3H_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009058 biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g11810.1Cp4.1LG12g11810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001374R3H domainGENE3DG3DSA:3.30.1370.50coord: 164..209
score: 2.
IPR001374R3H domainPFAMPF01424R3Hcoord: 162..210
score: 1.
IPR001374R3H domainunknownSSF82708R3H domaincoord: 143..241
score: 1.06
IPR025952R3H-associated N-terminal domainPFAMPF13902R3H-assoccoord: 33..156
score: 2.7
NoneNo IPR availablePANTHERPTHR32019FAMILY NOT NAMEDcoord: 1..251
score: 2.4
NoneNo IPR availablePANTHERPTHR32019:SF2R3H DOMAIN-CONTAINING PROTEIN 4coord: 1..251
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g11810CmaCh17G011660Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g11810CmaCh08G003570Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g11810CmoCh17G011410Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g11810CmoCh08G003540Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g11810Cla014750Watermelon (97103) v1cpewmB131
Cp4.1LG12g11810Csa7G393440Cucumber (Chinese Long) v2cpecuB158
Cp4.1LG12g11810MELO3C015851Melon (DHL92) v3.5.1cpemeB124
Cp4.1LG12g11810ClCG09G006940Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g11810CSPI07G16900Wild cucumber (PI 183967)cpecpiB160
Cp4.1LG12g11810Lsi02G023040Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g11810MELO3C015851.2Melon (DHL92) v3.6.1cpemedB151
Cp4.1LG12g11810CsaV3_7G028660Cucumber (Chinese Long) v3cpecucB0183
Cp4.1LG12g11810Bhi09G000853Wax gourdcpewgoB0203
Cp4.1LG12g11810CsGy7G015370Cucumber (Gy14) v2cgybcpeB901
Cp4.1LG12g11810Carg22192Silver-seed gourdcarcpeB1198
Cp4.1LG12g11810Carg07239Silver-seed gourdcarcpeB0158
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g11810Cp4.1LG17g06610Cucurbita pepo (Zucchini)cpecpeB157
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g11810Cucurbita pepo (Zucchini)cpecpeB183
Cp4.1LG12g11810Cucurbita pepo (Zucchini)cpecpeB192
Cp4.1LG12g11810Cucumber (Gy14) v1cgycpeB0151
Cp4.1LG12g11810Cucurbita maxima (Rimu)cmacpeB520
Cp4.1LG12g11810Cucurbita moschata (Rifu)cmocpeB479
Cp4.1LG12g11810Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g11810Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g11810Bottle gourd (USVL1VR-Ls)cpelsiB119
Cp4.1LG12g11810Watermelon (Charleston Gray)cpewcgB147
Cp4.1LG12g11810Watermelon (97103) v1cpewmB150
Cp4.1LG12g11810Cucumber (Gy14) v2cgybcpeB310
Cp4.1LG12g11810Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g11810Melon (DHL92) v3.6.1cpemedB171
Cp4.1LG12g11810Silver-seed gourdcarcpeB0100
Cp4.1LG12g11810Cucumber (Chinese Long) v3cpecucB0159
Cp4.1LG12g11810Wax gourdcpewgoB0197