Carg07239 (gene) Silver-seed gourd

Overview
NameCarg07239
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionR3H domain-containing protein 4
LocationCucurbita_argyrosperma_scaffold_017 : 843686 .. 847334 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAGATACTCTTCCGTATCGAATCCTTCTCTCGGTTGCTCTTGCAATTTCTAACGCTCTGTTTCTTCCTCCTTTTCGAAGCCTTGGATTCGATTTTGCCCTACTGTTCTGATCTCCTCATATTCACCTTTTGTCGATTCTCCCTTTCCGTCTCCGAACAAGATTTTCAATCCCATCCACGGAGCAGAAGCACGAGTAGAGCTTCGATCAGATTCTCTGTTTTCCACTCCAATCATGGCGTCCACTGATGTTCTTAAACGACATGAGAATCGCTTTACATTTTCCTCTCTCAGTGACCCACTCAAAGGTACTTCTTCTCTTTTGTTAATCATATCTGCTTATTGATAAAGGATCCGGTATGTAGATTTAGTTATACCAGGAATGATTTTTCCTGTTTCAGTTATGTGATTTTGACATTTTCTTTGGGATTTATATTTCTTTCAGTCGTCTTATTGAGTTAATTTCCCAGGTGATCTGGATTCTCGGGATATGTCAATCGAGAAGAAGATAGAATTTCTGGAGAGCTTAACAGGGAAGGTGAGGGTGTTTGGAAGTGTTGCAAATGTTCTTCTTAGGCCATAATGATTTCCATCAGGACTGTTCTGTGAGCTGTTTACTTGTATTGATTATAGCTTTGTTAATGCGACATGATGCTTTTGCAATGTGCTTGGGATGAAATAGAAGTGCACTGCTTAATTGGGGATATTATGGATATCAATCTAAGTGTTTGTTTTGTTCTGTTTTGCATGCTAATGTGATTGGCTCCATTTTAAGGGAAAACTAGTAACCTCTCCTGGTCATTTTCTCAATGGTCACCTTTTCAATTTTATTTGGAGTCGTCTTCGTGTGGCAAAGTTGTCAAGTAGTTGTTTTCTGTTCTCTAATTTGAGGTTGGAATTCCATCGAAACTATTCATCTCGACGCTTAAATGTGCTGCCTAGTGATACCAGTGACAACTCTCTTATTATATGAGGTAAAAAAGTGCATATCGTTTGTATTATTTGCTGGTGTTCATATTGTTATCACCTCCCAAAAACTTATTAAAATGCTCCTGTTTAAGAAAACTAACTTTTCCCCCCAATGATAAATAAATACTGTAGTTTCCTATTTAATTTTTGCTAGTCTTCGTCCACGGCAACTCGCTTTTTTTGTTTACTTCTAACTTTTTCTCCTTACTCTTTTCAGGTTACTAATAGGAAAACTCGTAGATGGTTAAATGATCGTCTTTTGATGGAGCTTGTTCCTCATTTGAATGCTGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTGGGGTGTGATACGTATAAAGACTTTGTCCTTTTCGTAATTATGCAAGCTATGGTTAGAGTTATTTCTGAATAATATAAATGCTAGATGTTTCAGAAGGTAGAGCCTTCTTTTGTTCATCACCTTTGCTATGTTATGCTTTAGGATTTGAGGTAAGGCATCAAAGTAGCTGTTCTTTTGATAGCCCCCTAGGAAATCTATACGAGAGAAGGCACGTGAGGAAAGAGAGTCGAGATTGATTTTGTAATTAGTTGGTTGGGGGGCTGAAGACTTAGGCGAGGAAGGCTTACTTAGGGAAAGGAGGGAGACGTAAGAGATACATTTCTGGATGGTCTTTAATTTCGGCATCCTTGGGAGCGAGGGGAAGCTTTATAATTCTTCGCAACTCGTTAAGACAGGAGAATTCAAAAACCCCTCCTCTCTCGAAAGACCATCAGAACCTTTCTAACACCTTTTTTTAATAGGAATTAGAAAACATATCATTGATATGATGAAATGCATACCAAAAAACAAAATCCTATAAAAAAATAATTACAAGAGACAAAAAATCCAACCGTACACGTATACTTTATGAACGTTGAAGATATCATTATGCGTATAGTGATCTAGACTATGATATATAAACCCTTAGAGTTCTCAGTAAACTTCCAATTGATCAGTTACTAAACTTAGCACCTGTTAGAAGTAGTAGCTATTTTGAATGGTTTAATAATGTAAGTATTGCATTTGCCAAGTCATATCTAGTGGCTTTACTATTAATTCCTTGAGGGAAGGGCTATATCTTCTCATCTTGTCTATGCTAACTTTTATCGATCCCTTTACTCAAGCCTAGAAATTCCTCACCCTGGTGAAAGGATTCATCATGGTTTGAGGTTACTTTGCAGGTGACGATGTACGGCCCACAACATTCTCCATGACTAATGCAGGAGACTGGGACAAATTTAGGAGTATTGACATGGATAAAGAGGTCTTTGTACTTTTCACTTTAATGTTACCCTTTTTTATTTTGTGAACCTCAGTATAGCTGAACGTTTCAGAAATTAAAGAACGGTAAAGCAGATGCCTAATCTAAGAACATAATCCAATTATGTAAGTTTCTTGTTAGGCTAAGTTCATTGGAGTCTTGGAGAACTCATCCATTAAGAGAAAGGGTCATATTGATGCAGACAAAGTGGCTTTCTTGAATGCCTGGCGCAGAATCGAGTGTCAAACGAGAGAGGCACTTCGCCGTAGCTTTCTTCCAGAGCTTGTTGAAGCTTTTGAGGTATGTATGTGTAGAAAAAGTCTCAAGTTTTTTTTTTTTTTTTTTTCCTGCATTTACTGGATGATTAATATGGTAGGTTAAGCTTTTTCTCCATCTTTAAAACATTGTTTTTACGTGATCGCAAATCTGAATGTTTGTTGAAGAGTGGCAACTAGCAAGGCATCGATCAAGTTAACTTATAATTTGGTAATAAGTTTCTTGCATTTTTGTTTTTCAGAATAGCATAAGATCATTCGTTTCGGACACTAGTAAAGAAGATGTCCTAACGATGCGGGTTCGAGACCCATTCCACAGATTATTGCTACATGGAGTTTGTGAGGTATTTCCTCCGGGTTTAAGTTTAAGGAAATAAGCATGCTCAACCATGAGATCAGAAATATACTTCATAGTTCGTACAACCTCATTCACTGTAACTTATCCGAAAAAATAAAAGCTATTGAGACTTGCACAAACTGCTCTTATTTACATCTATATGTTAAAGGACATATTAATCTCGAAATTTTGATAGGTTGAAATACCATTTTAGTCGATGTACTATGAGTTTCATTTCATTTTAGTCTCGTTGCTAATCTTAATTTAGGTCCTACTCCTAATAAATTTTAAAACTTATCCCTATATACTCTGAGACAACACTCTCGACTAAAAGAGGTCAAAGGTTTGAATTCTCTAAGTCGTTGTACTATTTTATAAATTTAGTTTGAATAAGCTAAATATTTGGCTGAATCATTTTGACATTATGCAAATTGTTTTCTTGGTAGTTCTACAATTTGGACTCTGTGACGGTTCCCGAGTTGAAAAACGGAAGCTCTACGAAGATGACTCGGTAACAAGGAAGAAGAAGGCCTTGGTTGAGGTCCCAAATATTACTCTTACCCATTTTCTAAAAATGTCCAAAGAAGGAACATGGTAATTTCGATTTATTAGGTGAAGAAACTCGATAGCTATAAATTAATGCTCGTTACGATAATATCAAAGGTATATTTAGAGTGTAGGTAGTGTGTAGAGTTGCTCAAATCCTGCTGCTGGACACATTCTTTTGGCACCAATTGTACCATTAGTATCATTTGAATAGATAAATGCCTTATTTCCTATTCA

mRNA sequence

AAAGAGATACTCTTCCGTATCGAATCCTTCTCTCGGTTGCTCTTGCAATTTCTAACGCTCTGTTTCTTCCTCCTTTTCGAAGCCTTGGATTCGATTTTGCCCTACTGTTCTGATCTCCTCATATTCACCTTTTGTCGATTCTCCCTTTCCGTCTCCGAACAAGATTTTCAATCCCATCCACGGAGCAGAAGCACGAGTAGAGCTTCGATCAGATTCTCTGTTTTCCACTCCAATCATGGCGTCCACTGATGTTCTTAAACGACATGAGAATCGCTTTACATTTTCCTCTCTCAGTGACCCACTCAAAGGTGATCTGGATTCTCGGGATATGTCAATCGAGAAGAAGATAGAATTTCTGGAGAGCTTAACAGGGAAGGTTACTAATAGGAAAACTCGTAGATGGTTAAATGATCGTCTTTTGATGGAGCTTGTTCCTCATTTGAATGCTGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTGGGGTGACGATGTACGGCCCACAACATTCTCCATGACTAATGCAGGAGACTGGGACAAATTTAGGAGTATTGACATGGATAAAGAGGCTAAGTTCATTGGAGTCTTGGAGAACTCATCCATTAAGAGAAAGGGTCATATTGATGCAGACAAAGTGGCTTTCTTGAATGCCTGGCGCAGAATCGAGTGTCAAACGAGAGAGGCACTTCGCCGTAGCTTTCTTCCAGAGCTTGTTGAAGCTTTTGAGAATAGCATAAGATCATTCGTTTCGGACACTAGTAAAGAAGATGTCCTAACGATGCGGGTTCGAGACCCATTCCACAGATTATTGCTACATGGAGTTTGTGAGTTCTACAATTTGGACTCTGTGACGGTTCCCGAGTTGAAAAACGGAAGCTCTACGAAGATGACTCGGTAACAAGGAAGAAGAAGGCCTTGGTTGAGGTCCCAAATATTACTCTTACCCATTTTCTAAAAATGTCCAAAGAAGGAACATGGTAATTTCGATTTATTAGGTGAAGAAACTCGATAGCTATAAATTAATGCTCGTTACGATAATATCAAAGGTATATTTAGAGTGTAGGTAGTGTGTAGAGTTGCTCAAATCCTGCTGCTGGACACATTCTTTTGGCACCAATTGTACCATTAGTATCATTTGAATAGATAAATGCCTTATTTCCTATTCA

Coding sequence (CDS)

ATGGCGTCCACTGATGTTCTTAAACGACATGAGAATCGCTTTACATTTTCCTCTCTCAGTGACCCACTCAAAGGTGATCTGGATTCTCGGGATATGTCAATCGAGAAGAAGATAGAATTTCTGGAGAGCTTAACAGGGAAGGTTACTAATAGGAAAACTCGTAGATGGTTAAATGATCGTCTTTTGATGGAGCTTGTTCCTCATTTGAATGCTGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTGGGGTGACGATGTACGGCCCACAACATTCTCCATGACTAATGCAGGAGACTGGGACAAATTTAGGAGTATTGACATGGATAAAGAGGCTAAGTTCATTGGAGTCTTGGAGAACTCATCCATTAAGAGAAAGGGTCATATTGATGCAGACAAAGTGGCTTTCTTGAATGCCTGGCGCAGAATCGAGTGTCAAACGAGAGAGGCACTTCGCCGTAGCTTTCTTCCAGAGCTTGTTGAAGCTTTTGAGAATAGCATAAGATCATTCGTTTCGGACACTAGTAAAGAAGATGTCCTAACGATGCGGGTTCGAGACCCATTCCACAGATTATTGCTACATGGAGTTTGTGAGTTCTACAATTTGGACTCTGTGACGGTTCCCGAGTTGAAAAACGGAAGCTCTACGAAGATGACTCGGTAA

Protein sequence

MASTDVLKRHENRFTFSSLSDPLKGDLDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDRLLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSDTSKEDVLTMRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR
Homology
[Close]
BLAST of Carg07239 vs. NCBI nr
Match: XP_023548227.1 (uncharacterized protein LOC111806930 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 438.0 bits (1125), Expect = 2.0e-119
Identity = 214/220 (97.27%), Postives = 217/220 (98.64%), Query Frame = 0 

Query: 1   MASTDVLKRHENRFTFSSLSDPLKGDLDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60
           MA+TDVLKRHENRFTFSSLSDPLKGD+DSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR
Sbjct: 1   MATTDVLKRHENRFTFSSLSDPLKGDMDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60

Query: 61  LLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLEN 120
           LLMELVP LNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLEN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLEN 120

Query: 121 SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSDTSKEDVL 180
           SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFV D SKEDVL
Sbjct: 121 SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDGSKEDVL 180

Query: 181 TMRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 221
           T+RVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR
Sbjct: 181 TLRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 220

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BLAST of Carg07239 vs. NCBI nr
Match: XP_022953481.1 (uncharacterized protein LOC111456018 isoform X2 [Cucurbita moschata])

HSP 1 Score: 427.9 bits (1099), Expect = 2.0e-116
Identity = 210/220 (95.45%), Postives = 214/220 (97.27%), Query Frame = 0 

Query: 1   MASTDVLKRHENRFTFSSLSDPLKGDLDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60
           MASTDVLKR ENRFTF SLSDPLKGD+DSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR
Sbjct: 1   MASTDVLKRQENRFTFPSLSDPLKGDMDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60

Query: 61  LLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLEN 120
           LLMELVP LNAEEIRGLFAPPPWGD+VRPTTFS TNAGDWDKFRSIDMDKEAKFIGVLEN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDNVRPTTFSTTNAGDWDKFRSIDMDKEAKFIGVLEN 120

Query: 121 SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSDTSKEDVL 180
           SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFV D+SKEDVL
Sbjct: 121 SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVLDSSKEDVL 180

Query: 181 TMRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 221
           T+RVRDPF RLLLHGVCEFYNLDSVTVPELKNGSSTKMTR
Sbjct: 181 TLRVRDPFRRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 220

[Close]
BLAST of Carg07239 vs. NCBI nr
Match: XP_022992548.1 (uncharacterized protein LOC111488839 isoform X1 [Cucurbita maxima])

HSP 1 Score: 421.4 bits (1082), Expect = 1.9e-114
Identity = 208/220 (94.55%), Postives = 212/220 (96.36%), Query Frame = 0 

Query: 1   MASTDVLKRHENRFTFSSLSDPLKGDLDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60
           MASTDVLKR ENRFTFSS+SDPLKGD+DSR MSIEKKIEFLESLTGKVTNRKT RWLNDR
Sbjct: 1   MASTDVLKRQENRFTFSSVSDPLKGDMDSRGMSIEKKIEFLESLTGKVTNRKTCRWLNDR 60

Query: 61  LLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLEN 120
           LLMELVP LNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFI VLEN
Sbjct: 61  LLMELVPLLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIVVLEN 120

Query: 121 SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSDTSKEDVL 180
           SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPEL EAFENSIRSFVSD SKEDVL
Sbjct: 121 SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELFEAFENSIRSFVSDGSKEDVL 180

Query: 181 TMRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 221
           T+RVRDPFHRLLLHGVCEFYNLDS+ VPELKNGSSTKMTR
Sbjct: 181 TLRVRDPFHRLLLHGVCEFYNLDSMMVPELKNGSSTKMTR 220

[Close]
BLAST of Carg07239 vs. NCBI nr
Match: XP_022150187.1 (uncharacterized protein LOC111018421 isoform X1 [Momordica charantia])

HSP 1 Score: 392.9 bits (1008), Expect = 7.2e-106
Identity = 193/220 (87.73%), Postives = 202/220 (91.82%), Query Frame = 0 

Query: 1   MASTDVLKRHENRFTFSSLSDPLKGDLDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60
           MASTDVLKR ENR TFS L DP+KGD DSR MSIEKKIEFLESL GKVTNRK+RRWLNDR
Sbjct: 1   MASTDVLKRVENRLTFSPLLDPIKGDADSRGMSIEKKIEFLESLAGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLEN 120
           LLMELVP LNAEE+RGLFAPPPWGDDVRPTTFSMTNA DWDKFRSIDMDKEAK IGVLEN
Sbjct: 61  LLMELVPRLNAEEVRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVLEN 120

Query: 121 SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSDTSKEDVL 180
           SS KRKGHIDADK+AFLNAWRRIEC+TREALRRSFLPELVE FE  IRSF+SDTSK DVL
Sbjct: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFLPELVEGFEGCIRSFISDTSK-DVL 180

Query: 181 TMRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 221
           T+RV+DPFHRLLLHGVCEFYNLDSVTVPE K G STK+TR
Sbjct: 181 TLRVQDPFHRLLLHGVCEFYNLDSVTVPESKGGGSTKVTR 219

[Close]
BLAST of Carg07239 vs. NCBI nr
Match: XP_023515083.1 (R3H domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.8 bits (987), Expect = 2.0e-103
Identity = 186/220 (84.55%), Postives = 201/220 (91.36%), Query Frame = 0 

Query: 1   MASTDVLKRHENRFTFSSLSDPLKGDLDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60
           MASTDVL + +NRFTFS LSDP+KGD +SR MSIEKKIEFLESLTGKVTNRK+RRWLNDR
Sbjct: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLEN 120
           LLMELVP LNAEEIRGLFAPPPWGDDVRPTTFSMTNA DWDKFRSIDMDKEAK IGVLEN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120

Query: 121 SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSDTSKEDVL 180
           SS ++KGHIDADK+AFLNAWRRIE +TREALRRSFLP LVE+FE  IRSF+SD+S +DVL
Sbjct: 121 SSARKKGHIDADKMAFLNAWRRIESRTREALRRSFLPGLVESFEECIRSFISDSSNQDVL 180

Query: 181 TMRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 221
           T+RV+DPFHRLLLHGVCEFYNLDS TVPE K   STKMTR
Sbjct: 181 TLRVQDPFHRLLLHGVCEFYNLDSATVPESKGAGSTKMTR 220

[Close]
BLAST of Carg07239 vs. TAIR10
Match: AT1G03250.2 (unknown protein)

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-73
Identity = 131/216 (60.65%), Postives = 169/216 (78.24%), Query Frame = 0 

Query: 1   MASTDVLKRHENRFTFSSLSDPLKGDLD-SRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MA+T+V++R E     S L DP +GD   SR +S+EKKIE LESL G+V+NR++RRWLND
Sbjct: 1   MAATNVMRRDE-----SLLIDPQRGDTSVSRGLSLEKKIEALESLAGQVSNRRSRRWLND 60

Query: 61  RLLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKE------AK 120
           R+LMELVP L+A+EIRGLFAPPPWGDDV P+ FS+TN G+WDKFR+IDMDKE      A 
Sbjct: 61  RILMELVPRLDAQEIRGLFAPPPWGDDVPPSAFSLTNVGEWDKFRNIDMDKEELCFFQAN 120

Query: 121 FIGVLENSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSD 180
            +  L  SS+++KG +D DK+A LNAWRRI+C+TR+ALRRSFLPEL+E +E+ I  F+ +
Sbjct: 121 IMDSLNRSSVRQKGSVDGDKIAVLNAWRRIDCRTRDALRRSFLPELIEGYESCISHFIEE 180

Query: 181 TSKEDVLTMRVRDPFHRLLLHGVCEFYNLDSVTVPE 210
             + DVL ++V+DPFHRLLLHGVCE++NL S T  E
Sbjct: 181 GGEGDVLELKVQDPFHRLLLHGVCEYHNLVSTTATE 211

[Close]
BLAST of Carg07239 vs. TrEMBL
Match: tr|A0A1S3BS51|A0A1S3BS51_CUCME (uncharacterized protein LOC103492685 OS=Cucumis melo OX=3656 GN=LOC103492685 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 8.4e-103
Identity = 189/220 (85.91%), Postives = 196/220 (89.09%), Query Frame = 0 

Query: 1   MASTDVLKRHENRFTFSSLSDPLKGDLDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60
           MASTDVLKR  N F FS  +DPL GD DSR MSIEKKIEFLESLTGKVTNRK+RRWLNDR
Sbjct: 1   MASTDVLKREANPFPFSLPNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLEN 120
           LLMELVP LNAEEIRGLFAPPPWGDDVRPTTFSMTNA DWDKFRSIDMDKEAK IGV EN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120

Query: 121 SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSDTSKEDVL 180
           SS KRKGHIDADK+AFLNAWRRIEC+TREALRRSF  ELVE +E SIRSF+SDT KEDVL
Sbjct: 121 SSSKRKGHIDADKMAFLNAWRRIECRTREALRRSFRAELVEGYEESIRSFISDTCKEDVL 180

Query: 181 TMRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 221
            MRV+DPFHRLLLHGVCEFYNLDSVTV E KN  STKMTR
Sbjct: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNKGSTKMTR 220

[Close]
BLAST of Carg07239 vs. TrEMBL
Match: tr|A0A0A0K5V5|A0A0A0K5V5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G393440 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 3.2e-102
Identity = 187/220 (85.00%), Postives = 195/220 (88.64%), Query Frame = 0 

Query: 1   MASTDVLKRHENRFTFSSLSDPLKGDLDSRDMSIEKKIEFLESLTGKVTNRKTRRWLNDR 60
           MAS DVL+R  NRF FS L+DPL GD DSR MSIEKKIEFLESLTGKVTNRK+RRWLNDR
Sbjct: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLEN 120
           LLMELVP LNAEEIRGLFAPPPWGDDVRPTTFSMTNA DWDKFRSIDMDKEAK IGV EN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120

Query: 121 SSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSDTSKEDVL 180
           SS KRKGHIDADK+AFLNAWRRIEC+TREALRRSF  ELVE +E  IRSF+SDT KEDVL
Sbjct: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180

Query: 181 TMRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 221
            MRV+DPFHRLLLHGVCEFYNLDSVTV E KN  S KMTR
Sbjct: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTR 220

[Close]
BLAST of Carg07239 vs. TrEMBL
Match: tr|W9R710|W9R710_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025046 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.0e-80
Identity = 145/221 (65.61%), Postives = 181/221 (81.90%), Query Frame = 0 

Query: 1   MASTDVLKRHENRFTFSSLSDPLKGD-LDSRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MA+ DVL+R E+ F  S   DP KGD   S D+SIEKKIEFLESL GKV+NR++RRWLND
Sbjct: 1   MATPDVLQREEDLFLSSPFLDPRKGDNAKSLDLSIEKKIEFLESLAGKVSNRRSRRWLND 60

Query: 61  RLLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLE 120
           RLLMELVP LNAEEIRGLFAPPPWGDDV P+ F+MTN G+WDKFR+IDMD+EA  +G L 
Sbjct: 61  RLLMELVPRLNAEEIRGLFAPPPWGDDVPPSPFAMTNGGEWDKFRNIDMDREADIMGALR 120

Query: 121 NSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSDTSKEDV 180
           +S  KRK H+D++K+A LNAWRR++C+TREALRRS L EL+E +E  IR++++D+ +E+ 
Sbjct: 121 SSPAKRKDHVDSNKMAVLNAWRRVDCRTREALRRSSLLELIEGYEECIRAYITDSGEEET 180

Query: 181 LTMRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 221
           L +RV+DPFHRLLLHGVCEFYNL SVTV + ++  S+K TR
Sbjct: 181 LILRVQDPFHRLLLHGVCEFYNLASVTVKQSEDAESSKTTR 221

[Close]
BLAST of Carg07239 vs. TrEMBL
Match: tr|A0A2I4DF08|A0A2I4DF08_9ROSI (uncharacterized protein LOC108979495 isoform X2 OS=Juglans regia OX=51240 GN=LOC108979495 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.7e-79
Identity = 146/221 (66.06%), Postives = 176/221 (79.64%), Query Frame = 0 

Query: 1   MASTDVLKRHENRFTFSSLSDPLKGD-LDSRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MA+  VL+R ++    SSL DP KG+   S  MSIEKKIEFLESLTG V+NR++RRWLND
Sbjct: 1   MATPQVLQRDDDLLLSSSLFDPRKGENAKSHGMSIEKKIEFLESLTGTVSNRRSRRWLND 60

Query: 61  RLLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLE 120
           R+LMELVP LNAEEIRGLFAPPPWGD+V  + F +TN G+WDKFR+IDMDKEA  I  LE
Sbjct: 61  RILMELVPRLNAEEIRGLFAPPPWGDEVPLSAFCLTNVGEWDKFRNIDMDKEATIIDALE 120

Query: 121 NSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSDTSKEDV 180
            S  K+ GH+DADK+A LNAW R+ C+TREALRRSFL EL+E +E  IR+F++D+   D+
Sbjct: 121 RSPSKKPGHVDADKMAVLNAWHRVNCRTREALRRSFLSELIEGYEECIRAFITDSGDTDI 180

Query: 181 LTMRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 221
           L +RV+DPFHRLLLHGVCEFYNL SVTV E K+  S+KMTR
Sbjct: 181 LVLRVQDPFHRLLLHGVCEFYNLVSVTVKESKDAGSSKMTR 221

[Close]
BLAST of Carg07239 vs. TrEMBL
Match: tr|A0A1U8K8U8|A0A1U8K8U8_GOSHI (uncharacterized protein LOC107914499 OS=Gossypium hirsutum OX=3635 GN=LOC107914499 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 5.5e-78
Identity = 144/221 (65.16%), Postives = 176/221 (79.64%), Query Frame = 0 

Query: 1   MASTDVLKRHENRFTFSSLSDPLKGDL-DSRDMSIEKKIEFLESLTGKVTNRKTRRWLND 60
           MA+  VL+R  +    S L +  KG+   SR +SIEKKIE LESLTGKVTNR++RRWLND
Sbjct: 1   MATPGVLQRETDLLLSSPLIELRKGENGKSRGLSIEKKIELLESLTGKVTNRRSRRWLND 60

Query: 61  RLLMELVPHLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKFIGVLE 120
           RLLMELVP LNAEE+RGLFAPPPWGDDV P+ F MTN G+WDKFR+IDMDKEA  IG L 
Sbjct: 61  RLLMELVPRLNAEEVRGLFAPPPWGDDVPPSAFCMTNVGEWDKFRTIDMDKEANIIGALN 120

Query: 121 NSSIKRKGHIDADKVAFLNAWRRIECQTREALRRSFLPELVEAFENSIRSFVSDTSKEDV 180
           NSS+K+K H DADK AFL+AWRR++C+TREALRRSFL +L+ ++E+ IR+F+ +    DV
Sbjct: 121 NSSMKKKFHADADKAAFLSAWRRVDCRTREALRRSFLSDLIASYEDCIRTFIQERGHGDV 180

Query: 181 LTMRVRDPFHRLLLHGVCEFYNLDSVTVPELKNGSSTKMTR 221
           L ++V+DPFHRLLLHGVCEFYN+ SVTV + K   S K+TR
Sbjct: 181 LALQVQDPFHRLLLHGVCEFYNVVSVTVTQSKGAESLKVTR 221

The following BLAST results are available for this feature:
BLAST of Carg07239 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023548227.12.0e-11997.27uncharacterized protein LOC111806930 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022953481.12.0e-11695.45uncharacterized protein LOC111456018 isoform X2 [Cucurbita moschata][more]
XP_022992548.11.9e-11494.55uncharacterized protein LOC111488839 isoform X1 [Cucurbita maxima][more]
XP_022150187.17.2e-10687.73uncharacterized protein LOC111018421 isoform X1 [Momordica charantia][more]
XP_023515083.12.0e-10384.55R3H domain-containing protein 4-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg07239 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03250.21.2e-7360.65unknown protein[more]
BLAST of Carg07239 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg07239 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BS51|A0A1S3BS51_CUCME8.4e-10385.91uncharacterized protein LOC103492685 OS=Cucumis melo OX=3656 GN=LOC103492685 PE=... [more]
tr|A0A0A0K5V5|A0A0A0K5V5_CUCSA3.2e-10285.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G393440 PE=4 SV=1[more]
tr|W9R710|W9R710_9ROSA2.0e-8065.61Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025046 PE=4 SV=1[more]
tr|A0A2I4DF08|A0A2I4DF08_9ROSI1.7e-7966.06uncharacterized protein LOC108979495 isoform X2 OS=Juglans regia OX=51240 GN=LOC... [more]
tr|A0A1U8K8U8|A0A1U8K8U8_GOSHI5.5e-7865.16uncharacterized protein LOC107914499 OS=Gossypium hirsutum OX=3635 GN=LOC1079144... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036867R3H_dom_sf
IPR025952R3H-assoc_dom
IPR001374R3H_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07239-RACarg07239-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001374R3H domainPFAMPF01424R3Hcoord: 159..207
e-value: 5.8E-6
score: 26.1
IPR025952R3H-associated N-terminal domainPFAMPF13902R3H-assoccoord: 33..153
e-value: 3.4E-27
score: 95.3
NoneNo IPR availablePANTHERPTHR32019FAMILY NOT NAMEDcoord: 4..214
IPR036867R3H domain superfamilySUPERFAMILYSSF82708R3H domaincoord: 140..209

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg07239Cla014750Watermelon (97103) v1carwmB0106
Carg07239Csa7G393440Cucumber (Chinese Long) v2carcuB0117
Carg07239MELO3C015851Melon (DHL92) v3.5.1carmeB0113
Carg07239ClCG09G006940Watermelon (Charleston Gray)carwcgB0108
Carg07239CSPI07G16900Wild cucumber (PI 183967)carcpiB0122
Carg07239CmaCh08G003570Cucurbita maxima (Rimu)carcmaB0148
Carg07239CmoCh17G011410Cucurbita moschata (Rifu)carcmoB0152
Carg07239CmoCh08G003540Cucurbita moschata (Rifu)carcmoB0157
Carg07239Lsi02G023040Bottle gourd (USVL1VR-Ls)carlsiB098
Carg07239Cp4.1LG12g11810Cucurbita pepo (Zucchini)carcpeB0158
Carg07239Cp4.1LG17g06610Cucurbita pepo (Zucchini)carcpeB0161
Carg07239CsGy7G015370Cucumber (Gy14) v2carcgybB0118
Carg07239MELO3C015851.2Melon (DHL92) v3.6.1carmedB0115
Carg07239CsaV3_7G028660Cucumber (Chinese Long) v3carcucB0126
Carg07239Cla97C09G169520Watermelon (97103) v2carwmbB0117
Carg07239Bhi09G000853Wax gourdcarwgoB0131
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg07239Carg22192Silver-seed gourdcarcarB135
The following block(s) are covering this gene:
GeneOrganismBlock
Carg07239Watermelon (97103) v2carwmbB0115
Carg07239Watermelon (97103) v2carwmbB0116
Carg07239Wax gourdcarwgoB0130
Carg07239Silver-seed gourdcarcarB077
Carg07239Silver-seed gourdcarcarB131
Carg07239Watermelon (Charleston Gray)carwcgB0113
Carg07239Cucumber (Gy14) v2carcgybB0120
Carg07239Cucurbita maxima (Rimu)carcmaB0142
Carg07239Cucurbita maxima (Rimu)carcmaB0144
Carg07239Cucurbita moschata (Rifu)carcmoB0154
Carg07239Cucurbita pepo (Zucchini)carcpeB0160
Carg07239Bottle gourd (USVL1VR-Ls)carlsiB100
Carg07239Watermelon (97103) v1carwmB0109