Carg02060 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02060
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger CCCH domain-containing protein 53 isoform X1
Location	Cucurbita_argyrosperma_scaffold_003 : 1977874 .. 1980924 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTTATGAAGCAACAAGAACTGTGTTCTCTAGGATTCAGAATTTGGACCCTGAAAATGCTTCCAAAATCATGGGTCTTCTTCTGATTCAAGACCATGGAGAAAAGGAGATGATACGATTGGCTTTTGGCTCTGAATCTCTGCTTCACTCTGTAATTCTTAAGGCCAGGAAGGATTTGGGCCTCCCGTCGGTTAACTCGCCGTCGACTCCCTCGACGCCGAGTTCTTCACCTTCTCCGTTTTCTCTTTCGACCAATCCAATCGCTATTTCCAGGCAGAGTTCTTCTCGGTTGGGAATTAATCTTCCTCCTTCACTTACAATTCCTAGCCCTTCTTCTTCCAGCTCTGCTTCTTGGGCTCCTGGTTTTAACTCTAAGCTTCAAAGTTTTGATGATCATTTGATTAGTCCTGGGAATTTACCACTTGGGTCGTCTTGTTTTGGTGCTGGGGGAACTCCGGCGGCTGATATGATTGATGAATTTCAGCTTCAGGACCAGCTTTCATTTCTCAACGATGGTTCCCCGACAATCGGCGTTAAAAATTCCGACTTGTTTTTCCCGCCGGCCGATTTGTCGTCGAGTCCCACCGGGGGTGGGTTTGGGAACTACGGCGGTGATGCCAGTTGGGATGGAGGGCCGTTCCACCGCCGGAGCTACTCTGTGAACGACGCCGGTTTGGGAACAGAGGATCTGAATTGTGGGTTGGGTTGGAAGCCTTGTCTGTACTACGCTAGAGGGTTTTGTAAGAATGGAACCAGTTGTCGGTTTCTCCATGGCGGCCTTGGAGACTCCGACGGCGGCGCCGCTGTAGGCTCGCCGAGTAAGATCGAGATGATGGAGCAGTGCCACGAGCTTCTCAGATCCAAATCCTCTGCTCAACAGCGACTCGCCGCTGCTTCTCAGCTTATGGCCTCTGCTAATTCCTTCCCTTACTCTCCTAAATCCATCAACTTCCTTCTCCAGCAGCAACAAAACAATTCCCAGAGGTATAATCTTTTCATTTTATGCAGAATGTCCAGCGATTTATGAAGAAAATCTCATCTTTTAAACCCATCTGTTTGCAGAGCCGCCGCCGCGGCGTTAATAATGGGGGAAGATCTACACAAATTTGGTCGGTCCAGCCGGCTTGAGCAAAACGAATTCTCACTGAACGGCGGTGCCGGAATCGTCAATCCGGCGTCAAGGCAGATCTACTTGACTTTCCCGGCCGATAGCACATTCAAAGAAGAAGATGTGTCGAATTATTTCAGGTTTCTTCATTAACCCAATTCTTTATTTTGTGAAGTTCATCTTCCATTTCTGAAATTTGTTGGTTTTCTGAAGCATTTACGGCCCAGTTCAAGATGTGAGAATCCCTTATCAACAGAAGAGAATGTTTGGATTTGTCACTTTTGTTTACCCTGAAACTGTGAAGCTGATTTTGGCTAAAGGAAATCCCCATTTTGTCTGTGATGCTCGTGTTCTTGTTAAACCATACAAGGAGAAAGGCAAAGTCCCAGACAAGTACAGGCACACTCTGTTTCACTCTGTTTTACTCTGTTTTGCTCTGTTTTGCCTCTTAGAGTTTGTATGTGATACTTTGGATTGGTGTGGTTGTTCTAACAGGAAGCAGCAGCAAATCGACAGAGATTACTCTCCTTGTGGAACTCCAACTGGGTTGGATTCCAGGGAGCTTTACGATCATCTTCAACTCGGGTCGAGAATGTTCTATAATTCTCACCAAGATCTGCTATGGCGAAGGAAATTGGAAGAACAGCAAGCCGATCTTCAAACGCTCGATCTTCAAAGTCGACGCCTTTTGAATCTGCAGCTTCTTGATGTGAAGAAGAGTCAGCTCCCCCACCACCACCGTGCACTTTCCACCGGCAGCCCGATTCCTTCTCCGACGCATTCTCCAAACCCTTTTGCTCAAAATCACATCTTCCCCACCATTCGTAGCAGTAGCGGCAGCAGCAGCACCTCAGACATCTTGAGAGGTGAGGTCCATAATCCCATCTCAGCTTGTGGTGCTACTCCCGTGCCTGTTCGGACACCACCGCCCATAGTCACGATGTCGTCGACCGATATGCCACGACAACCATCACCAGTCGATAACGGGACATCGACCAACAAGTTCCCATCGAATGGTCAAGGAGAGCATGACAAGGAGAGATCCCAAATTGAAGACAGTGATTTACTTGAATGGTAATACAATTGACAGTCCTGTTTTGATCTTAAGGTTCTGCTTTTAGTTTAGATTGTTCTCAAGTGTAAAAATGCACATCGCAGCTTTGAACATAATCTCCCTGATAGTCCCTTTGCATCACCTGCAAAAGCCCCTACCGACTACGCCGCGACATTCTCCATCGAGGAAGCAGCAAATGACTCCGACGACGCGTCATCATCGTCAATACTCACACCAACTCCCTCTAGGGAAGTAGCAACAGCCTCCTTCAAATCATTCAATTGCCAAATGCCAAGGTGAGTACATACAAACAAATATACAAACAGCTCAAGTTGTTGAATCCATGTTACTTGACACACATACAAACAACAATCAATCTGGTACAGGTTCCCAACCGGGCACAGCACGATCGGGATGTACGCAGGGACGGGCGGGCCGACATGTCCGGTGGGAATTTAGCATCCAAAGCAGGAGGAGGAGGAGGTAGTGTTAGTTGGAAAAAGAAGTGCATAGTTGAATTAACAATGATGTTTGGTGAATTGGAGGAAGGAAAGAAAGAAATAAAGTAAAAGAAAGAAAGAAAGAAAGAGAAAAAAAAGGTAAAAGTGTAAGCATATGAACACAATATCTATAGAGAATGATGAGCAGTAGCAGTAGGAGTAGCAGCTCCAGACAAGACTCCTCCAGCAAGAACAGTATAAAAGAGGAAGGTGGGGGGTCACCCATTATTCTTGTTCTTCTTTGTTCCTGGTTTATTGTTGTTGTAGTAGCAGCACAGCTGTAGAACAACCCATCTCTCTCTCTCTCTTTAAGAATTTACAGTAGAAAAAAAAAAAGAAAAGGACACAGAAAGCAAGAAAGAAAGAAGTTTTTTTTTTCTTTTT

mRNA sequence

ATGGATTCTTATGAAGCAACAAGAACTGTGTTCTCTAGGATTCAGAATTTGGACCCTGAAAATGCTTCCAAAATCATGGGTCTTCTTCTGATTCAAGACCATGGAGAAAAGGAGATGATACGATTGGCTTTTGGCTCTGAATCTCTGCTTCACTCTGTAATTCTTAAGGCCAGGAAGGATTTGGGCCTCCCGTCGGTTAACTCGCCGTCGACTCCCTCGACGCCGAGTTCTTCACCTTCTCCGTTTTCTCTTTCGACCAATCCAATCGCTATTTCCAGGCAGAGTTCTTCTCGGTTGGGAATTAATCTTCCTCCTTCACTTACAATTCCTAGCCCTTCTTCTTCCAGCTCTGCTTCTTGGGCTCCTGGTTTTAACTCTAAGCTTCAAAGTTTTGATGATCATTTGATTAGTCCTGGGAATTTACCACTTGGGTCGTCTTGTTTTGGTGCTGGGGGAACTCCGGCGGCTGATATGATTGATGAATTTCAGCTTCAGGACCAGCTTTCATTTCTCAACGATGGTTCCCCGACAATCGGCGTTAAAAATTCCGACTTGTTTTTCCCGCCGGCCGATTTGTCGTCGAGTCCCACCGGGGGTGGGTTTGGGAACTACGGCGGTGATGCCAGTTGGGATGGAGGGCCGTTCCACCGCCGGAGCTACTCTGTGAACGACGCCGGTTTGGGAACAGAGGATCTGAATTGTGGGTTGGGTTGGAAGCCTTGTCTGTACTACGCTAGAGGGTTTTGTAAGAATGGAACCAGTTGTCGGTTTCTCCATGGCGGCCTTGGAGACTCCGACGGCGGCGCCGCTGTAGGCTCGCCGAGTAAGATCGAGATGATGGAGCAGTGCCACGAGCTTCTCAGATCCAAATCCTCTGCTCAACAGCGACTCGCCGCTGCTTCTCAGCTTATGGCCTCTGCTAATTCCTTCCCTTACTCTCCTAAATCCATCAACTTCCTTCTCCAGCAGCAACAAAACAATTCCCAGAGAGCCGCCGCCGCGGCGTTAATAATGGGGGAAGATCTACACAAATTTGGTCGGTCCAGCCGGCTTGAGCAAAACGAATTCTCACTGAACGGCGGTGCCGGAATCGTCAATCCGGCGTCAAGGCAGATCTACTTGACTTTCCCGGCCGATAGCACATTCAAAGAAGAAGATGTGTCGAATTATTTCAGCATTTACGGCCCAGTTCAAGATGTGAGAATCCCTTATCAACAGAAGAGAATGTTTGGATTTGTCACTTTTGTTTACCCTGAAACTGTGAAGCTGATTTTGGCTAAAGGAAATCCCCATTTTGTCTGTGATGCTCGTGTTCTTGTTAAACCATACAAGGAGAAAGGCAAAGTCCCAGACAAGTACAGGCACACTCTGTTTCACTCTGTTTTACTCTGTTTTGCTCTGTTTTGCCTCTTAGAGTTTGTATGTGATACTTTGGATTGGTGTGGTTGTTCTAACAGGAAGCAGCAGCAAATCGACAGAGATTACTCTCCTTGTGGAACTCCAACTGGGTTGGATTCCAGGGAGCTTTACGATCATCTTCAACTCGGGTCGAGAATGTTCTATAATTCTCACCAAGATCTGCTATGGCGAAGGAAATTGGAAGAACAGCAAGCCGATCTTCAAACGCTCGATCTTCAAAGTCGACGCCTTTTGAATCTGCAGCTTCTTGATGTGAAGAAGAGTCAGCTCCCCCACCACCACCGTGCACTTTCCACCGGCAGCCCGATTCCTTCTCCGACGCATTCTCCAAACCCTTTTGCTCAAAATCACATCTTCCCCACCATTCGTAGCAGTAGCGGCAGCAGCAGCACCTCAGACATCTTGAGAGGTGAGGTCCATAATCCCATCTCAGCTTGTGGTGCTACTCCCGTGCCTGTTCGGACACCACCGCCCATAGTCACGATGTCGTCGACCGATATGCCACGACAACCATCACCAGTCGATAACGGGACATCGACCAACAAGTTCCCATCGAATGGTCAAGGAGAGCATGACAAGGAGAGATCCCAAATTGAAGACAGTGATTTACTTGAATGCTTTGAACATAATCTCCCTGATAGTCCCTTTGCATCACCTGCAAAAGCCCCTACCGACTACGCCGCGACATTCTCCATCGAGGAAGCAGCAAATGACTCCGACGACGCGTCATCATCGTCAATACTCACACCAACTCCCTCTAGGGAAGTAGCAACAGCCTCCTTCAAATCATTCAATTGCCAAATGCCAAGGTTCCCAACCGGGCACAGCACGATCGGGATGTACGCAGGGACGGGCGGGCCGACATGTCCGGTGGGAATTTAGCATCCAAAGCAGGAGGAGGAGGAGGTAGTGTTAGTTGGAAAAAGAAGTGCATAGTTGAATTAACAATGATGTTTGGTGAATTGGAGGAAGGAAAGAAAGAAATAAAGTAAAAGAAAGAAAGAAAGAAAGAGAAAAAAAAGGTAAAAGTGTAAGCATATGAACACAATATCTATAGAGAATGATGAGCAGTAGCAGTAGGAGTAGCAGCTCCAGACAAGACTCCTCCAGCAAGAACAGTATAAAAGAGGAAGGTGGGGGGTCACCCATTATTCTTGTTCTTCTTTGTTCCTGGTTTATTGTTGTTGTAGTAGCAGCACAGCTGTAGAACAACCCATCTCTCTCTCTCTCTTTAAGAATTTACAGTAGAAAAAAAAAAAGAAAAGGACACAGAAAGCAAGAAAGAAAGAAGTTTTTTTTTTCTTTTT

Coding sequence (CDS)

ATGGATTCTTATGAAGCAACAAGAACTGTGTTCTCTAGGATTCAGAATTTGGACCCTGAAAATGCTTCCAAAATCATGGGTCTTCTTCTGATTCAAGACCATGGAGAAAAGGAGATGATACGATTGGCTTTTGGCTCTGAATCTCTGCTTCACTCTGTAATTCTTAAGGCCAGGAAGGATTTGGGCCTCCCGTCGGTTAACTCGCCGTCGACTCCCTCGACGCCGAGTTCTTCACCTTCTCCGTTTTCTCTTTCGACCAATCCAATCGCTATTTCCAGGCAGAGTTCTTCTCGGTTGGGAATTAATCTTCCTCCTTCACTTACAATTCCTAGCCCTTCTTCTTCCAGCTCTGCTTCTTGGGCTCCTGGTTTTAACTCTAAGCTTCAAAGTTTTGATGATCATTTGATTAGTCCTGGGAATTTACCACTTGGGTCGTCTTGTTTTGGTGCTGGGGGAACTCCGGCGGCTGATATGATTGATGAATTTCAGCTTCAGGACCAGCTTTCATTTCTCAACGATGGTTCCCCGACAATCGGCGTTAAAAATTCCGACTTGTTTTTCCCGCCGGCCGATTTGTCGTCGAGTCCCACCGGGGGTGGGTTTGGGAACTACGGCGGTGATGCCAGTTGGGATGGAGGGCCGTTCCACCGCCGGAGCTACTCTGTGAACGACGCCGGTTTGGGAACAGAGGATCTGAATTGTGGGTTGGGTTGGAAGCCTTGTCTGTACTACGCTAGAGGGTTTTGTAAGAATGGAACCAGTTGTCGGTTTCTCCATGGCGGCCTTGGAGACTCCGACGGCGGCGCCGCTGTAGGCTCGCCGAGTAAGATCGAGATGATGGAGCAGTGCCACGAGCTTCTCAGATCCAAATCCTCTGCTCAACAGCGACTCGCCGCTGCTTCTCAGCTTATGGCCTCTGCTAATTCCTTCCCTTACTCTCCTAAATCCATCAACTTCCTTCTCCAGCAGCAACAAAACAATTCCCAGAGAGCCGCCGCCGCGGCGTTAATAATGGGGGAAGATCTACACAAATTTGGTCGGTCCAGCCGGCTTGAGCAAAACGAATTCTCACTGAACGGCGGTGCCGGAATCGTCAATCCGGCGTCAAGGCAGATCTACTTGACTTTCCCGGCCGATAGCACATTCAAAGAAGAAGATGTGTCGAATTATTTCAGCATTTACGGCCCAGTTCAAGATGTGAGAATCCCTTATCAACAGAAGAGAATGTTTGGATTTGTCACTTTTGTTTACCCTGAAACTGTGAAGCTGATTTTGGCTAAAGGAAATCCCCATTTTGTCTGTGATGCTCGTGTTCTTGTTAAACCATACAAGGAGAAAGGCAAAGTCCCAGACAAGTACAGGCACACTCTGTTTCACTCTGTTTTACTCTGTTTTGCTCTGTTTTGCCTCTTAGAGTTTGTATGTGATACTTTGGATTGGTGTGGTTGTTCTAACAGGAAGCAGCAGCAAATCGACAGAGATTACTCTCCTTGTGGAACTCCAACTGGGTTGGATTCCAGGGAGCTTTACGATCATCTTCAACTCGGGTCGAGAATGTTCTATAATTCTCACCAAGATCTGCTATGGCGAAGGAAATTGGAAGAACAGCAAGCCGATCTTCAAACGCTCGATCTTCAAAGTCGACGCCTTTTGAATCTGCAGCTTCTTGATGTGAAGAAGAGTCAGCTCCCCCACCACCACCGTGCACTTTCCACCGGCAGCCCGATTCCTTCTCCGACGCATTCTCCAAACCCTTTTGCTCAAAATCACATCTTCCCCACCATTCGTAGCAGTAGCGGCAGCAGCAGCACCTCAGACATCTTGAGAGGTGAGGTCCATAATCCCATCTCAGCTTGTGGTGCTACTCCCGTGCCTGTTCGGACACCACCGCCCATAGTCACGATGTCGTCGACCGATATGCCACGACAACCATCACCAGTCGATAACGGGACATCGACCAACAAGTTCCCATCGAATGGTCAAGGAGAGCATGACAAGGAGAGATCCCAAATTGAAGACAGTGATTTACTTGAATGCTTTGAACATAATCTCCCTGATAGTCCCTTTGCATCACCTGCAAAAGCCCCTACCGACTACGCCGCGACATTCTCCATCGAGGAAGCAGCAAATGACTCCGACGACGCGTCATCATCGTCAATACTCACACCAACTCCCTCTAGGGAAGTAGCAACAGCCTCCTTCAAATCATTCAATTGCCAAATGCCAAGGTTCCCAACCGGGCACAGCACGATCGGGATGTACGCAGGGACGGGCGGGCCGACATGTCCGGTGGGAATTTAG

Protein sequence

MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKDLGLPSVNSPSTPSTPSSSPSPFSLSTNPIAISRQSSSRLGINLPPSLTIPSPSSSSSASWAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIGVKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWKPCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLAAASQLMASANSFPYSPKSINFLLQQQQNNSQRAAAAALIMGEDLHKFGRSSRLEQNEFSLNGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFVCDTLDWCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQADLQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSSGSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTDMPRQPSPVDNGTSTNKFPSNGQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFSIEEAANDSDDASSSSILTPTPSREVATASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI

Homology

[Close]

BLAST of Carg02060 vs. NCBI nr
Match: XP_022956378.1 (zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita moschata] >XP_022956382.1 zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 1361.7 bits (3523), Expect = 0.0e+00
Identity = 724/767 (94.39%), Postives = 730/767 (95.18%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSE+LLHSVILKARKD
Sbjct: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSETLLHSVILKARKD 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQ-SSSRLGINLPPSLTIPSPSSSSSAS 120
           LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQ SSSRLGINLPPSLTIPSP SSSSAS
Sbjct: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSSRLGINLPPSLTIPSP-SSSSAS 120

Query: 121 WAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG 180
           WAPGFNSKLQSFDDHLISPG+LPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG
Sbjct: 121 WAPGFNSKLQSFDDHLISPGHLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG 180

Query: 181 VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK 240
           VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK
Sbjct: 181 VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK 240

Query: 241 PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLAA 300
           PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLAA
Sbjct: 241 PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLAA 300

Query: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN 360
           ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN
Sbjct: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN 360

Query: 361 GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPE 420
           GG GIVNPASRQIYLTFPADSTFKEEDVSNYFS+YGPVQDVRIPYQQKRMFGFVTFVYPE
Sbjct: 361 GGVGIVNPASRQIYLTFPADSTFKEEDVSNYFSMYGPVQDVRIPYQQKRMFGFVTFVYPE 420

Query: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFVCDTLD 480
           TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKY                          
Sbjct: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKY-------------------------- 480

Query: 481 WCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQAD 540
                 RKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQAD
Sbjct: 481 ------RKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQAD 540

Query: 541 LQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSS 600
           LQTLDLQSRRLLNLQLLDVKK+QLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSS
Sbjct: 541 LQTLDLQSRRLLNLQLLDVKKNQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSS 600

Query: 601 GSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTDMPRQPSPVDNGTSTNKFPSN 660
            SSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSST+MPRQPSPVDNGTSTNKFPSN
Sbjct: 601 SSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTNMPRQPSPVDNGTSTNKFPSN 660

Query: 661 GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFSIEEAANDSDDASSSS 720
           GQGEHDKERSQIEDSDLLECFEHNLPDSPFASP+KAPTDYAATFSIEEAANDSDDASSSS
Sbjct: 661 GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPSKAPTDYAATFSIEEAANDSDDASSSS 720

Query: 721 ILTPTPSREVATASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 767
           ILTPTPSREVA ASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI
Sbjct: 721 ILTPTPSREVAAASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 734

[Close]

BLAST of Carg02060 vs. NCBI nr
Match: XP_022956383.1 (zinc finger CCCH domain-containing protein 53-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 1356.3 bits (3509), Expect = 0.0e+00
Identity = 722/767 (94.13%), Postives = 728/767 (94.92%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSE+LLHSVILKARKD
Sbjct: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSETLLHSVILKARKD 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQ-SSSRLGINLPPSLTIPSPSSSSSAS 120
           LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQ SSSRLGINLPPSLTIPSP SSSSAS
Sbjct: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSSRLGINLPPSLTIPSP-SSSSAS 120

Query: 121 WAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG 180
           WAPGFNSKLQSFDDHLISPG+LPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG
Sbjct: 121 WAPGFNSKLQSFDDHLISPGHLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG 180

Query: 181 VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK 240
           VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK
Sbjct: 181 VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK 240

Query: 241 PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLAA 300
           PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLAA
Sbjct: 241 PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLAA 300

Query: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN 360
           ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN
Sbjct: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN 360

Query: 361 GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPE 420
           GG GIVNPASRQIYLTFPADSTFKEEDVSNYFS+YGPVQDVRIPYQQKRMFGFVTFVYPE
Sbjct: 361 GGVGIVNPASRQIYLTFPADSTFKEEDVSNYFSMYGPVQDVRIPYQQKRMFGFVTFVYPE 420

Query: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFVCDTLD 480
           TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDK                           
Sbjct: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDK--------------------------- 480

Query: 481 WCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQAD 540
                  KQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQAD
Sbjct: 481 -------KQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQAD 540

Query: 541 LQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSS 600
           LQTLDLQSRRLLNLQLLDVKK+QLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSS
Sbjct: 541 LQTLDLQSRRLLNLQLLDVKKNQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSS 600

Query: 601 GSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTDMPRQPSPVDNGTSTNKFPSN 660
            SSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSST+MPRQPSPVDNGTSTNKFPSN
Sbjct: 601 SSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTNMPRQPSPVDNGTSTNKFPSN 660

Query: 661 GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFSIEEAANDSDDASSSS 720
           GQGEHDKERSQIEDSDLLECFEHNLPDSPFASP+KAPTDYAATFSIEEAANDSDDASSSS
Sbjct: 661 GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPSKAPTDYAATFSIEEAANDSDDASSSS 720

Query: 721 ILTPTPSREVATASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 767
           ILTPTPSREVA ASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI
Sbjct: 721 ILTPTPSREVAAASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 732

[Close]

BLAST of Carg02060 vs. NCBI nr
Match: XP_022999006.1 (zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita maxima] >XP_022999014.1 zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 1350.9 bits (3495), Expect = 0.0e+00
Identity = 708/767 (92.31%), Postives = 713/767 (92.96%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD
Sbjct: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQ-SSSRLGINLPPSLTIPSPSSSSSAS 120
           LGLPSVNSP           PFSLSTNPIAISRQ SSSRLGINLPPSLTIPSPSSSSSAS
Sbjct: 61  LGLPSVNSPSTPSTPGSSPSPFSLSTNPIAISRQSSSSRLGINLPPSLTIPSPSSSSSAS 120

Query: 121 WAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG 180
           WAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG
Sbjct: 121 WAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG 180

Query: 181 VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK 240
           VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK
Sbjct: 181 VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK 240

Query: 241 PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLAA 300
           PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIE+MEQCHELLRSKSSAQQRLAA
Sbjct: 241 PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEIMEQCHELLRSKSSAQQRLAA 300

Query: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN 360
           ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXX  MGEDLHKFGRSSRLEQNEFSLN
Sbjct: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXLIMGEDLHKFGRSSRLEQNEFSLN 360

Query: 361 GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPE 420
           GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFS+YGPVQDVRIPYQQKRMFGFVTFVYPE
Sbjct: 361 GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSMYGPVQDVRIPYQQKRMFGFVTFVYPE 420

Query: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFVCDTLD 480
           TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKY                          
Sbjct: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKY-------------------------- 480

Query: 481 WCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQAD 540
                 RKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRK EEQQAD
Sbjct: 481 ------RKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKFEEQQAD 540

Query: 541 LQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSS 600
           LQTLDLQSRRLLNLQLLDVKK+QLPHHHRALSTGSPIPSPT+SPNPFAQNHIFP IRSSS
Sbjct: 541 LQTLDLQSRRLLNLQLLDVKKNQLPHHHRALSTGSPIPSPTYSPNPFAQNHIFPAIRSSS 600

Query: 601 GSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTDMPRQPSPVDNGTSTNKFPSN 660
            SSSTSDILRGEVHNPISACGATPVPVRTPPPIV  SSTDMPRQPSPVDNGTSTNKFPSN
Sbjct: 601 -SSSTSDILRGEVHNPISACGATPVPVRTPPPIVMTSSTDMPRQPSPVDNGTSTNKFPSN 660

Query: 661 GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFSIEEAANDSDDASSSS 720
           GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKA TDYAATFSI EAANDSD+ASSSS
Sbjct: 661 GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKASTDYAATFSIGEAANDSDNASSSS 720

Query: 721 ILTPTPSREVATASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 767
           ILTPTPSREVA ASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI
Sbjct: 721 ILTPTPSREVAAASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 734

[Close]

BLAST of Carg02060 vs. NCBI nr
Match: XP_022999022.1 (zinc finger CCCH domain-containing protein 53-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 1345.5 bits (3481), Expect = 0.0e+00
Identity = 706/767 (92.05%), Postives = 711/767 (92.70%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD
Sbjct: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQ-SSSRLGINLPPSLTIPSPSSSSSAS 120
           LGLPSVNSP           PFSLSTNPIAISRQ SSSRLGINLPPSLTIPSPSSSSSAS
Sbjct: 61  LGLPSVNSPSTPSTPGSSPSPFSLSTNPIAISRQSSSSRLGINLPPSLTIPSPSSSSSAS 120

Query: 121 WAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG 180
           WAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG
Sbjct: 121 WAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG 180

Query: 181 VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK 240
           VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK
Sbjct: 181 VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK 240

Query: 241 PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLAA 300
           PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIE+MEQCHELLRSKSSAQQRLAA
Sbjct: 241 PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEIMEQCHELLRSKSSAQQRLAA 300

Query: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN 360
           ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXX  MGEDLHKFGRSSRLEQNEFSLN
Sbjct: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXLIMGEDLHKFGRSSRLEQNEFSLN 360

Query: 361 GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPE 420
           GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFS+YGPVQDVRIPYQQKRMFGFVTFVYPE
Sbjct: 361 GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSMYGPVQDVRIPYQQKRMFGFVTFVYPE 420

Query: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFVCDTLD 480
           TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDK                           
Sbjct: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDK--------------------------- 480

Query: 481 WCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQAD 540
                  KQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRK EEQQAD
Sbjct: 481 -------KQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKFEEQQAD 540

Query: 541 LQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSS 600
           LQTLDLQSRRLLNLQLLDVKK+QLPHHHRALSTGSPIPSPT+SPNPFAQNHIFP IRSSS
Sbjct: 541 LQTLDLQSRRLLNLQLLDVKKNQLPHHHRALSTGSPIPSPTYSPNPFAQNHIFPAIRSSS 600

Query: 601 GSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTDMPRQPSPVDNGTSTNKFPSN 660
            SSSTSDILRGEVHNPISACGATPVPVRTPPPIV  SSTDMPRQPSPVDNGTSTNKFPSN
Sbjct: 601 -SSSTSDILRGEVHNPISACGATPVPVRTPPPIVMTSSTDMPRQPSPVDNGTSTNKFPSN 660

Query: 661 GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFSIEEAANDSDDASSSS 720
           GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKA TDYAATFSI EAANDSD+ASSSS
Sbjct: 661 GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKASTDYAATFSIGEAANDSDNASSSS 720

Query: 721 ILTPTPSREVATASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 767
           ILTPTPSREVA ASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI
Sbjct: 721 ILTPTPSREVAAASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 732

[Close]

BLAST of Carg02060 vs. NCBI nr
Match: XP_023552014.1 (zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552022.1 zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1345.5 bits (3481), Expect = 0.0e+00
Identity = 722/768 (94.01%), Postives = 727/768 (94.66%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD
Sbjct: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQ-SSSRLGINLPPSLTIPSPSSSSSAS 120
           LGLPSVNSPXXXXXXXXXXX FSLSTNPIAISRQ SSSRLGINLPPSLTIPSPSSSSSAS
Sbjct: 61  LGLPSVNSPXXXXXXXXXXXXFSLSTNPIAISRQSSSSRLGINLPPSLTIPSPSSSSSAS 120

Query: 121 WAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG 180
           WAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTP AD+IDEFQLQDQLSFLNDGSPTIG
Sbjct: 121 WAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPTADIIDEFQLQDQLSFLNDGSPTIG 180

Query: 181 VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK 240
           VKNSDLFFPPADLSSSPT GGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK
Sbjct: 181 VKNSDLFFPPADLSSSPT-GGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK 240

Query: 241 PCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLAA 300
           PCLYYARGFCKNGTSCRFLHGGLGDSDG AAVGSPSKIEMMEQCHELLRSKSSAQQRLAA
Sbjct: 241 PCLYYARGFCKNGTSCRFLHGGLGDSDGCAAVGSPSKIEMMEQCHELLRSKSSAQQRLAA 300

Query: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN 360
           ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN
Sbjct: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN 360

Query: 361 GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPE 420
           GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFS+YGPVQDVRIPYQQKRMFGFVTFVYPE
Sbjct: 361 GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSMYGPVQDVRIPYQQKRMFGFVTFVYPE 420

Query: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFVCDTLD 480
           TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKY                          
Sbjct: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKY-------------------------- 480

Query: 481 WCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQAD 540
                 RKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQAD
Sbjct: 481 ------RKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQAD 540

Query: 541 LQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSS 600
           LQTLDLQSRRLLNLQLLDVKK+QLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSS
Sbjct: 541 LQTLDLQSRRLLNLQLLDVKKNQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRSSS 600

Query: 601 GSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTDMPRQPSPVDNGTSTNKFPSN 660
            SS+TSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTDMPRQPSPVDN TSTNKFPSN
Sbjct: 601 -SSTTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTDMPRQPSPVDNRTSTNKFPSN 660

Query: 661 GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFSIEEAANDSDDASSSS 720
           GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFS+EEAANDSDDASSSS
Sbjct: 661 GQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFSVEEAANDSDDASSSS 720

Query: 721 ILTPTPSREV-ATASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 767
           ILTPTPSREV A ASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI
Sbjct: 721 ILTPTPSREVAAAASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 734

[Close]

BLAST of Carg02060 vs. TAIR10
Match: AT3G51950.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 375.2 bits (962), Expect = 9.8e-104
Identity = 308/769 (40.05%), Postives = 373/769 (48.50%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MD YEATR V SRIQ+LDPENASKIMGLLL+QDHGEKEMIRLAFG E+L+HSVI+KA+K+
Sbjct: 1   MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSRLGINLPPSLTIPSPSSSSSASW 120
           LGL + +             P+S     I                     SP ++  +S 
Sbjct: 61  LGLMNCS-----------RSPWSHQDELI---------------------SPKNNRGSS- 120

Query: 121 APGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIGV 180
                          ++P +LP     +  GG  + D+ ++F+L D ++           
Sbjct: 121 ---------------LNPASLPF----YANGGRSSRDLTNDFELMDDMN----------S 180

Query: 181 KNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWKP 240
           +++D        S S    G G YGGD+                        + G G  P
Sbjct: 181 RSTDFLGSVHARSGSCVLDGLG-YGGDS------------------------DLGFGGVP 240

Query: 241 CLYYARGFCKNGTSCRFLHGGLGDSDGGA-AVGSPSKIEMMEQCHELLRSKSSAQQRLAA 300
           C Y+ARGFCKNG SCRF+H     SDGGA  VGSPS+I       ELLRS +S   RLA 
Sbjct: 241 CSYFARGFCKNGASCRFVH-----SDGGADLVGSPSRI-------ELLRS-NSVPPRLAH 300

Query: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN 360
                +S  SF  S K +N                   +G++L K GR  R E+ + S  
Sbjct: 301 HFMTRSSLPSF--STKGVNL-----QQNDVQRAAAALMIGDELQKLGR-WRPERIDLS-- 360

Query: 361 GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPE 420
               +  PASRQIYLTFPADS F+EEDVSNYFS +GPVQDVRIPYQQKRMFGFVTFVYPE
Sbjct: 361 ---AMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPE 420

Query: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFVCDTLD 480
           TVK ILAKGNPHFVCD+RVLVKPYKEKGKVPDKY                          
Sbjct: 421 TVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKY-------------------------- 480

Query: 481 WCGCSNRKQQQIDRDYSPCGTPTGLDS--RELYDHLQLGSRMFYNSHQDLLWRRKLEEQQ 540
                 R  Q  +R+ S    PTGLDS  R++     LG R FYN+ QD+LWR K EE  
Sbjct: 481 ------RTNQTTERELS----PTGLDSSPRDV-----LGGRGFYNNTQDVLWRSKFEE-- 540

Query: 541 ADLQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRS 600
              + L+LQSRRL+NLQLLDVKK      H  L++    P+  HSPNPF+Q+ I P    
Sbjct: 541 ---EILELQSRRLMNLQLLDVKK------HFQLNS----PTNIHSPNPFSQSLISP---- 540

Query: 601 SSGSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTDMPRQPSPVDNGTSTNKFP 660
                            P+S                              D G       
Sbjct: 601 ----------------RPLSVI------------------------KREYDGG------- 540

Query: 661 SNGQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFSIEEAANDSDDASS 720
             G+G   KE S  +  +L E  E +LPDSPFASPA     +   F+     N SD  S 
Sbjct: 661 EKGKGS-SKEGSDDDTMNLPERLEDSLPDSPFASPA----HHLLLFADSADNNGSDLWSP 540

Query: 721 SSILTPTPSREVATASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 767
           SS                    QMPR P     IGM  G GGPTC VGI
Sbjct: 721 SSXXXXXXXXXXXXXXXXXXXXQMPRLP----AIGMLPGRGGPTCRVGI 540

[Close]

BLAST of Carg02060 vs. TAIR10
Match: AT5G12440.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 331.3 bits (848), Expect = 1.6e-90
Identity = 234/593 (39.46%), Postives = 312/593 (52.61%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MDS +AT  + ++I++L+P+ A KI+G LL+ D G+++++ LA G ES+L S I K +  
Sbjct: 1   MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSRLGI-----NLPPSLTIPSPSSS 120
           LG+ S NSP           P      P    R SS   G      N P           
Sbjct: 61  LGIFSNNSPSSTPTSPSPLNPI---CRPPLNGRGSSHSNGFMDFRRNSPXXXXXXXXXXX 120

Query: 121 SSASW---------APGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQD 180
                         +P      + F  H  +  +     S   AGG   AD++D+ QL D
Sbjct: 121 XXXXXXXXXXXPHISPKHTPISKPFSSHQSNGLSATHSGSADAAGG---ADLLDDQQLND 180

Query: 181 QLSFLNDGSPTIGVKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAG 240
            LSFL+D       K  DL  P   L  S  G G  +            HRRS+S  DA 
Sbjct: 181 CLSFLDDSCS----KTEDLVDPSIPLDYSVDGDGETH-----------LHRRSFSC-DAS 240

Query: 241 LGTEDLNCGLGWKPCLYYARGFCKNGTSCRFLHGGLGDS-DG-GAAVGSPSKIEMMEQCH 300
             + D   G G KPC+Y++RG CKNG SC+F+HGG  D+ DG G    SP K+E   + H
Sbjct: 241 FVSGDDGFGGGCKPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENFVRQH 300

Query: 301 ELLRSKSSAQQRLAAASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHK 360
           E +     A Q+   ASQ++  A   PY  K ++FL                  G++   
Sbjct: 301 EEMMRLKLAYQQQRLASQILGRAPQLPYE-KRMDFL-----LQQHAQRDGGLPFGDERFW 360

Query: 361 FGRSSRLEQNEFSLNGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPY 420
                RLE+ E +++ G    N ASRQIYLTFPADSTFK+EDV+ YFS++G VQDVRIPY
Sbjct: 361 SSSPGRLERMELAMHLG-DQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPY 420

Query: 421 QQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLC 480
           QQKRMFGFV+F +PETVK++LA+GNPHF+CD+RVLVKPYKEKGKV DK +  L       
Sbjct: 421 QQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLL------ 480

Query: 481 FALFCLLEFVCDTLDWCGCSNRKQQQIDR-DYSPCGTPTGLDSRELYDHLQLGSRMFYNS 540
                                  QQQI+R +YSPC +P+G+D RE  D   LGS+M Y  
Sbjct: 481 -----------------------QQQIERGNYSPCSSPSGIDPREQSD-FHLGSKMLYER 530

Query: 541 HQDLLWRRKLEEQQAD-LQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSP 576
            +  + RRK+E  QAD L+ ++L+ RR +NLQL + K S   +HHR+ S GSP
Sbjct: 541 RE--MMRRKIE--QADLLRAIELERRRFINLQLPEFKNSVTLNHHRSFSVGSP 530

[Close]

BLAST of Carg02060 vs. TAIR10
Match: AT3G21100.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 301.6 bits (771), Expect = 1.4e-81
Identity = 232/612 (37.91%), Postives = 312/612 (50.98%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MD  + T  +F++I+ L+P+ ASKI+G LL+QD G+ +++RLA G E+LL SV LKA+  
Sbjct: 1   MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSA 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSRLGINLPPSLTIPSPSSSSSASW 120
           LGL S  S            P +  + PI I R S S    + P +    +P S S A+ 
Sbjct: 61  LGLSSNGS-------SSASSPLNPISRPINIHRHSLSH---SSPGNGFSRNPLSPSFAT- 120

Query: 121 APG-FNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIG 180
            PG   S                                +DE QL + LSFLN+ S    
Sbjct: 121 -PGSLGSNPNMIXXXXXXXXXXXXXXXXXXXXXXXXXXFLDEQQLGNYLSFLNESSS--- 180

Query: 181 VKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWK 240
            KN+D    P          GF    GDA       H+RS+S +DA  G+E+   G    
Sbjct: 181 -KNNDESLDPF---------GFSADNGDAH-----LHKRSFSASDACFGSEEPGFG---- 240

Query: 241 PCLYYARGFCKNGTSCRFLHGGLGDS-DGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLA 300
                       G   RFLHGGLGD  D     GSP  +   ++  E++R K + +QR+A
Sbjct: 241 -----------GGGYNRFLHGGLGDDFDSPGGFGSPDYVSRQQE--EIVRMKMAQRQRMA 300

Query: 301 AASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSL 360
           AA  L A+ +   Y  K +NFL                  GE+ + FG   R E++EF  
Sbjct: 301 AAQYLAATGSPMSYE-KGLNFL----LHQRNAHRSGAGQFGEEGYWFGSPGRHERDEFMG 360

Query: 361 NGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYP 420
            G     N AS+QIYLTFPADS+F +EDVSNYF  +GPVQDVRIPYQQKRMFGFVTF++ 
Sbjct: 361 MGDKS--NSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHS 420

Query: 421 ETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFVCDTL 480
           ETV++ILA+GNPHF+CD+RVLVKPYKEKG++ +K +                        
Sbjct: 421 ETVRIILARGNPHFICDSRVLVKPYKEKGRILEKRQ------------------------ 480

Query: 481 DWCGCSNRKQQQIDR-DYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQ 540
                  +  QQ++R ++SP  +P+G+DSR+L+D   L  RMF N+ +  + RRK E  Q
Sbjct: 481 -----QQQLLQQMERGNFSPGSSPSGMDSRDLFDS-HLAPRMFSNTQE--MMRRKAE--Q 511

Query: 541 ADL-QTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIR 600
           ADL Q ++ Q RR L+LQL D+      HH R+LS GSP+             H  P + 
Sbjct: 541 ADLQQAIEFQRRRFLSLQLPDMDSESFLHHQRSLSIGSPV-------------HFSPRVN 511

Query: 601 SSS--GSSSTSD 607
            S    S STSD
Sbjct: 601 QSMLFRSESTSD 511

[Close]

BLAST of Carg02060 vs. TAIR10
Match: AT3G63450.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-59
Identity = 190/562 (33.81%), Postives = 226/562 (40.21%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MD YEATR V SRIQNLDP NASKI+GLLL+QDHGEKEMIRLAFG ++LLHSVI KA+KD
Sbjct: 1   MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSRLGINLPPSLTIPSPSSSSSASW 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 APGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIGV 180
                                                      L+++LSFL   +     
Sbjct: 121 -------------------------------------------LEERLSFLTPRT----- 180

Query: 181 KNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWKP 240
                    A+   S  G G+G             HR+                      
Sbjct: 181 ---------AEDFESDLGFGWG-------------HRK---------------------- 240

Query: 241 CLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHELLRSKSSAQQRLAAA 300
                                                       E+LRS S         
Sbjct: 241 --------------------------------------------EVLRSNS-------VP 288

Query: 301 SQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFG--RSSRLEQNEFSL 360
            +L      +P+SPK +N                   MG+DLHK G  R  R++ +  + 
Sbjct: 301 PRLANQFTGYPFSPKGVNL------QQSEAQRAAALMMGDDLHKLGIWRPERIDLSATAC 288

Query: 361 NGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYP 420
                   PASRQIYLTFPADS F+EEDVS+YFS +GPVQDVRIPYQQKRMFGFVTF+YP
Sbjct: 361 --------PASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYP 288

Query: 421 ETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFVCDTL 480
           ETVK ILAKGNPHFVC +RVLVKPYKEKGKVPDKYR                        
Sbjct: 421 ETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKYRTK---------------------- 288

Query: 481 DWCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQA 540
                                      SR++ D  QLG R F   H+DLLW+R+ EE   
Sbjct: 481 --------------------------PSRDIMD-FQLGGRAF---HEDLLWKRRFEE--- 288

Query: 541 DLQTLDLQSRRLLNLQLLDVKK 561
             + L+LQS RL+NLQLLDV+K
Sbjct: 541 --RALELQSTRLMNLQLLDVEK 288

[Close]

BLAST of Carg02060 vs. TAIR10
Match: AT1G51520.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-49
Identity = 174/544 (31.99%), Postives = 242/544 (44.49%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MD  + T  +FS+I+  + ENAS+++   L+QD  ++++IR+AFG +SL+ +   KA+ D
Sbjct: 1   MDPGDPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVD 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSRLGINLPPSLTIPSPSSSSSASW 120
           LG  S                FS   N    S  SSS     L  S    +P SSS    
Sbjct: 61  LGFSS--------------NGFSRPINIHGQSLSSSSPRNGFLEFSRNPSNPLSSSLT-- 120

Query: 121 APGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIGV 180
                  L +  D+  +  + P   S                     L F ND  P    
Sbjct: 121 -------LNTLRDNKPNFNSSPFRESXXXXXXXXXXXXXXXXXXXXXL-FTNDEDP---- 180

Query: 181 KNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWKP 240
                               F N            H+RS+S NDA   +E+   G     
Sbjct: 181 --------------------FAN-----------SHKRSFSANDACFESEEPWFG----- 240

Query: 241 CLYYARGFCKNGTSC-RFLHGGLGDSDGGAAV-GSPSKIEMMEQCHELLRSKSSAQQRLA 300
                      G  C +F  GGL D  G + V GSPS+++ M     ++R K + Q+ + 
Sbjct: 241 ----------GGNGCHQFPQGGLVDGFGSSGVFGSPSEMDYM--LEGMMRMKLAQQKSMV 300

Query: 301 AASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSL 360
           AA  + A  +   +   S +F                   GE+   +    R E+ +   
Sbjct: 301 AAQFMAACGSPMLHRHGSGHF-------------------GEECGNYFSQGRHERED--- 360

Query: 361 NGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYP 420
                     S+QIYLTFP++S+F +EDVS YF  +G V DVRIPYQQ+RM+GFVTF   
Sbjct: 361 --------SVSKQIYLTFPSESSFTDEDVSTYFRDFGLVDDVRIPYQQQRMYGFVTFAKA 405

Query: 421 ETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFVCDTL 480
           ETV+ ILA+GNPHF+CD+RVLVKPYKEKGK+  K +    H +L                
Sbjct: 421 ETVRTILARGNPHFICDSRVLVKPYKEKGKILQKRQQQQLHELL---------------- 405

Query: 481 DWCGCSNRKQQQIDR-DYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQ 540
                        +R +YSP  +P+G DSRELY+  +LG RMF    Q++L RRK E  Q
Sbjct: 481 -------------ERGNYSPSSSPSGKDSRELYE-CRLGPRMFSKKTQEML-RRKTE--Q 405

Query: 541 ADLQ 542
           ADLQ
Sbjct: 541 ADLQ 405

[Close]

BLAST of Carg02060 vs. Swiss-Prot
Match: sp|Q0D3J9|C3H53_ORYSJ (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.3e-126
Identity = 362/804 (45.02%), Postives = 442/804 (54.98%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MD+YEAT+ VFSRIQ LDP++A+KIMG LLIQDHGEKEMIRLAFG E+LLH+V+ KARK+
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSRLGINLPPSLTIPSP-SSSSSAS 120
           LGL   + P             + + +P  +SRQ+S R G       T PSP S SS +S
Sbjct: 61  LGLLPASGPGTPTSVAAAA---AAAHSPFMLSRQNSGRCG-------TAPSPLSVSSPSS 120

Query: 121 WAP------------GFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQ 180
           WAP            G   ++    D LISP N     S F  GG P   ++DE QLQDQ
Sbjct: 121 WAPPPVFSRNNSISNGAGEEMVGLGDELISPANGGGPPSPF-FGGDP---LMDELQLQDQ 180

Query: 181 LSFLNDGSPTIGVKNSDLFFPPADLSS--SPTGGGFGNYGGDASW-DGGPFHRRSYSVND 240
           L+FLN+G    G +      P  D     SP GG  G +  +  W +GGP HRRS SV++
Sbjct: 181 LAFLNEGGVPAGHQ-----MPMFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASVSE 240

Query: 241 AGLGTEDLNCGLGWKPCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCH 300
             LG  D   GLGWKPCLYYARG+CKNG++CRF+HGGL D   G     PS +E  +QC 
Sbjct: 241 LCLGGAD---GLGWKPCLYYARGYCKNGSACRFVHGGLPDDAAGKM--DPSAVE--QQCQ 300

Query: 301 E-LLRSKSSAQQRLAAASQLMASANSFPYSPKSIN--------FLXXXXXXXXXXXXXXX 360
           + L+RSKS   QRLAAA+   +   S P SP +            XXXXXXXXXXXXXXX
Sbjct: 301 DFLIRSKS---QRLAAAAFPYSPTGSLPGSPSAATKCLSXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXMGEDLHKFGRSSRLEQNEFSLNGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYG 420
           XX   + HKF    RLE+ +F     A ++NP SRQIYLTFPADSTF+EEDVSNYFSIYG
Sbjct: 361 XXXXXEAHKFMGRPRLERADF-----ASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYG 420

Query: 421 PVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRH 480
           PV DVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHF+CDARVLVKPYKEKGKVPDKYR 
Sbjct: 421 PVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYR- 480

Query: 481 TLFHSVLLCFALFCLLEFVCDTLDWCGCSNRKQQQIDR-DYSPCGTPTGLDSRELYDHLQ 540
                                         ++ Q  +R D+S C TPTGLD+R+ +D  Q
Sbjct: 481 ------------------------------KQHQPGERVDFSSCTTPTGLDARDPFDMHQ 540

Query: 541 LGSRMFY--NSHQDLLWRRKLEEQQ--ADL-QTLDLQSRRLLNLQLLDVKKSQLPHHHRA 600
           LG+RM    NS  ++L RRKLEEQQ  A+L Q ++L SRRL+ LQLLD K        RA
Sbjct: 541 LGARMLQHSNSANEMLLRRKLEEQQQAAELQQAIELHSRRLMGLQLLDFKS-------RA 600

Query: 601 LSTGSPIPSPTHSPNPFAQNHIFPTIRSSSGSSSTSDILRGEVHNPISACGATPVPVRTP 660
            +  +PI       NPF+ +    T  +++G S                           
Sbjct: 601 AAAPTPI------GNPFSASQ---TAANATGES--------------------------- 660

Query: 661 PPIVTMSSTDMPRQPSPVDNGTSTNKFPSNGQGEHDKERSQIEDS----DLLECFEHNLP 720
                      P     +  G+             DKE S  E S    D  +  EHNLP
Sbjct: 661 -----------PPDSGELGKGSGFLLAHKKAVNGADKEESTGESSSPNTDSDQSVEHNLP 682

Query: 721 DSPFASPAK---------APT--DYAATFSIEEAA-----NDSDDASSSSILTPTPSREV 754
           DSPFASP K         APT  + +AT S   +A     N+      ++ L P+    +
Sbjct: 721 DSPFASPTKSAGFARDPFAPTEAEISATASTGCSATYVGINNGASNGGTNHLLPS---AL 682

[Close]

BLAST of Carg02060 vs. Swiss-Prot
Match: sp|Q10LZ9|C3H23_ORYSJ (Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0329200 PE=2 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 3.8e-121
Identity = 348/782 (44.50%), Postives = 436/782 (55.75%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MD+YEAT+ VFSRIQ LDP++A+KIMGLLLIQDHG+KEMIRLAFG E+LLHSV+ +ARK+
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSRLGINLPPSLTIPSPSSSSSASW 120
           L L     P           P + S  P  +SRQ+S R     P S     P S S++  
Sbjct: 61  LAL----LPPPQAASSSPTVPAAHS--PFLLSRQNSGRCPAPSPSSWAQAQPFSRSNSMG 120

Query: 121 APGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAAD--MIDEFQLQDQLSFLNDGSPTI 180
             G   ++    + L+SP N             P     ++D+F+LQ+QL+FL+DG+  +
Sbjct: 121 NGGAADEMVGAGEELMSPLNXXXXXXXXXXXFFPRGGDALLDDFELQEQLAFLHDGAGGV 180

Query: 181 GVKNSDLFFPPADLSSSPTG--GGFGNYGGDASW-DGGPFHRRSYSVNDAGLGTEDLNCG 240
              ++   F  A+  S   G  GG   YG   +W +GGP HRRS SVN+  LG +    G
Sbjct: 181 NPGHALQAFDGAECRSPGPGESGGMLPYG--LAWANGGPGHRRSASVNELCLGGD----G 240

Query: 241 LGWKPCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHE-LLRSKSSAQ 300
            GWKPCLYYARGFCKNG++CRF+HGGL D    AA+ + +  +  +QC + LLRSKS   
Sbjct: 241 FGWKPCLYYARGFCKNGSTCRFVHGGLSDD---AAMDATTAEQ--QQCQDFLLRSKS--- 300

Query: 301 QRLAAASQLMASANSFPYSPKSIN--------FLXXXXXXXXXXXXXXXXXMGEDLHKFG 360
           QRL  A+       S P SP + +          XXXXXXXXXXXXXXXXX     HKF 
Sbjct: 301 QRLGPAAFPFTPTGSLPASPSATSKCLSXXXXXXXXXXXXXXXXXXXXXXXXXXXAHKFM 360

Query: 361 RSSRLEQNEFSLNGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQ 420
              RL++ +F     A ++NP SRQIYLTFPADSTF+EEDVSNYFSIYGPV DVRIPYQQ
Sbjct: 361 GRPRLDRVDF-----ASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQ 420

Query: 421 KRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFA 480
           KRMFGFVTFVYPETVKLILAKGNPHF+CDARVLVKPYKEKGKVPDKY             
Sbjct: 421 KRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKY------------- 480

Query: 481 LFCLLEFVCDTLDWCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFY--NSH 540
                              RKQQQ D     C +PTGLD+R+ +D  QLG+RM    NS 
Sbjct: 481 -------------------RKQQQGD---FCCMSPTGLDARDPFDFHQLGARMLQHSNSA 540

Query: 541 QDLLWRRKLEEQQ--ADL-QTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPSPTH 600
            +L+ RRKLEEQQ  A+L Q +DL SRRL+ LQLLD+K S     H A +T   +P+P  
Sbjct: 541 NELMLRRKLEEQQQAAELQQAIDLHSRRLIGLQLLDLKSSAAV--HAAETTTMSLPTPI- 600

Query: 601 SPNPFAQNHIFPTIRSSSGSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTDMP 660
             N F       T    S  SST  ++        ++CG+                   P
Sbjct: 601 -TNAFTSGQPGATTIVESPPSSTGQLM--------ASCGS-------------------P 660

Query: 661 RQPSPVDNGTSTNKFPSNGQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAA 720
            +   V+ G   NK  S G      E ++  DSD  +  EHNLPDSPFAS  K+   + A
Sbjct: 661 SEGKVVNGG---NKADSAG------EVTRNADSD--QSGEHNLPDSPFASSTKSTAFFTA 677

Query: 721 T----------FSIEEAANDSDDASSSSILTPTPSREVATASFKSFNCQMPRFPTGHSTI 754
           T          F+   + N    A  S+     P+ ++ +     F   MPR  + H  I
Sbjct: 721 TAATAIGSEGDFTTGSSCNIGGSAVGSANPLRPPTLDIPSPRTCFF--PMPRL-SEHGAI 677

[Close]

BLAST of Carg02060 vs. Swiss-Prot
Match: sp|Q10M00|C3H22_ORYSJ (Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0328900 PE=2 SV=2)

HSP 1 Score: 402.9 bits (1034), Expect = 7.9e-111
Identity = 331/743 (44.55%), Postives = 416/743 (55.99%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MD+YEAT+ VFSRIQ LDP++A+KIMGLLLIQDHG+KEMIRLAFG E+LLHSV+ +ARK+
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSRLGINLPPSLTIPSPSSSSSA-- 120
           L        XXXXXXXXXXX    + +P  +SRQ+S                        
Sbjct: 61  LA-----XXXXXXXXXXXXXXXPAAHSPFLLSRQNSGXXXXXXXXXXXXXXXXXXXXXXP 120

Query: 121 -SWAPGFNSKLQSFDDHLISPGNLPLGSSC-----FGAGGTPAADMIDEFQLQDQLSFLN 180
            S + G   ++    + LISP N   G++      F  GG     ++D+FQLQ+QL+FLN
Sbjct: 121 FSRSNGSVDEVVGAGEELISPANSGGGAAANAPPFFPRGGDV---LLDDFQLQEQLAFLN 180

Query: 181 DGSPTIGVKNSDLF--FPPADLSSSPTGGGFGNYGGDASW-DGGPFHRRSYSVNDAGLGT 240
           +G    GV  S     F  A+  S   G G G +     W +GGP HRRS SVN+  LG 
Sbjct: 181 EG----GVNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGG 240

Query: 241 EDLNCGLGWKPCLYYARGFCKNGTSCRFLHGGLGDSDGGAAVGSPSKIEMMEQCHE-LLR 300
              + G GWKPCLYYARGFCKNG+SCRF+HG    +  GAA+ + +  +  +QC + LLR
Sbjct: 241 GSSD-GFGWKPCLYYARGFCKNGSSCRFVHGDDAAALTGAAMDAATAEQ--QQCQDFLLR 300

Query: 301 SKSSAQQRLAAASQLMASANSFPYSPKSIN-------FLXXXXXXXXXXXXXXXXXMGED 360
           SKS   QRL  A+   +   S P SP +           XXXXXXXXXXXXXXXXX   +
Sbjct: 301 SKS---QRLGPAAFPYSPTGSLPGSPSAATKCLSXXXXXXXXXXXXXXXXXXXXXXXXXE 360

Query: 361 LHKFGRSSRLEQNEFSLNGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVR 420
            HKF    RL++ +F     A ++NP SRQIYLTFPADSTF+EEDVSNYFSIYGPV DVR
Sbjct: 361 AHKFMGRPRLDRVDF-----ASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVR 420

Query: 421 IPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSV 480
           IPYQQKRMFGFVTFVYPETVKLILAKGNPHF+CDARVLVKPYKEKGKVPDKY        
Sbjct: 421 IPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKY-------- 480

Query: 481 LLCFALFCLLEFVCDTLDWCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFY 540
                                   RK Q    D+S C TPTGLD R+ +D  QLG+RM  
Sbjct: 481 ------------------------RKHQ---GDFSGCTTPTGLDGRDPFDLHQLGARMLQ 540

Query: 541 --NSHQDLLWRRKLEE--QQADL-QTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPI 600
             NS  +++ RRKLEE    A+L Q ++L SRRL++LQLLD+K         A++T   +
Sbjct: 541 HSNSTNEMMLRRKLEEXXXAAELQQAIELHSRRLMDLQLLDLKNRAA----AAVTTAMAM 600

Query: 601 PSPTHSPNPFAQNHIFPTIRSSSGSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMS 660
             PT                ++ GSS            P++        V +PP      
Sbjct: 601 TIPT---------------ANAFGSS-----------QPLAT-----TMVESPP------ 642

Query: 661 STDMPRQPSPVDNGTSTNKFPSNGQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAP 720
             D   Q       T   K  + G  + +       ++D  +  EHNLPDSPFASP K+ 
Sbjct: 661 --DSGEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSDQSLEHNLPDSPFASPTKSS 642

[Close]

BLAST of Carg02060 vs. Swiss-Prot
Match: sp|Q9SV09|C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.8e-102
Identity = 308/769 (40.05%), Postives = 373/769 (48.50%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MD YEATR V SRIQ+LDPENASKIMGLLL+QDHGEKEMIRLAFG E+L+HSVI+KA+K+
Sbjct: 1   MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSRLGINLPPSLTIPSPSSSSSASW 120
           LGL + +             P+S     I                     SP ++  +S 
Sbjct: 61  LGLMNCS-----------RSPWSHQDELI---------------------SPKNNRGSS- 120

Query: 121 APGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTIGV 180
                          ++P +LP     +  GG  + D+ ++F+L D ++           
Sbjct: 121 ---------------LNPASLPF----YANGGRSSRDLTNDFELMDDMN----------S 180

Query: 181 KNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGWKP 240
           +++D        S S    G G YGGD+                        + G G  P
Sbjct: 181 RSTDFLGSVHARSGSCVLDGLG-YGGDS------------------------DLGFGGVP 240

Query: 241 CLYYARGFCKNGTSCRFLHGGLGDSDGGA-AVGSPSKIEMMEQCHELLRSKSSAQQRLAA 300
           C Y+ARGFCKNG SCRF+H     SDGGA  VGSPS+I       ELLRS +S   RLA 
Sbjct: 241 CSYFARGFCKNGASCRFVH-----SDGGADLVGSPSRI-------ELLRS-NSVPPRLAH 300

Query: 301 ASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQNEFSLN 360
                +S  SF  S K +N                   +G++L K GR  R E+ + S  
Sbjct: 301 HFMTRSSLPSF--STKGVNL-----QQNDVQRAAAALMIGDELQKLGR-WRPERIDLS-- 360

Query: 361 GGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPE 420
               +  PASRQIYLTFPADS F+EEDVSNYFS +GPVQDVRIPYQQKRMFGFVTFVYPE
Sbjct: 361 ---AMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPE 420

Query: 421 TVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFVCDTLD 480
           TVK ILAKGNPHFVCD+RVLVKPYKEKGKVPDKY                          
Sbjct: 421 TVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKY-------------------------- 480

Query: 481 WCGCSNRKQQQIDRDYSPCGTPTGLDS--RELYDHLQLGSRMFYNSHQDLLWRRKLEEQQ 540
                 R  Q  +R+ S    PTGLDS  R++     LG R FYN+ QD+LWR K EE  
Sbjct: 481 ------RTNQTTERELS----PTGLDSSPRDV-----LGGRGFYNNTQDVLWRSKFEE-- 540

Query: 541 ADLQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPSPTHSPNPFAQNHIFPTIRS 600
              + L+LQSRRL+NLQLLDVKK      H  L++    P+  HSPNPF+Q+ I P    
Sbjct: 541 ---EILELQSRRLMNLQLLDVKK------HFQLNS----PTNIHSPNPFSQSLISP---- 540

Query: 601 SSGSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSSTDMPRQPSPVDNGTSTNKFP 660
                            P+S                              D G       
Sbjct: 601 ----------------RPLSVI------------------------KREYDGG------- 540

Query: 661 SNGQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFSIEEAANDSDDASS 720
             G+G   KE S  +  +L E  E +LPDSPFASPA     +   F+     N SD  S 
Sbjct: 661 EKGKGS-SKEGSDDDTMNLPERLEDSLPDSPFASPA----HHLLLFADSADNNGSDLWSP 540

Query: 721 SSILTPTPSREVATASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 767
           SS                    QMPR P     IGM  G GGPTC VGI
Sbjct: 721 SSXXXXXXXXXXXXXXXXXXXXQMPRLP----AIGMLPGRGGPTCRVGI 540

[Close]

BLAST of Carg02060 vs. Swiss-Prot
Match: sp|Q94CJ8|C3H55_ARATH (Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN=At5g12440 PE=2 SV=3)

HSP 1 Score: 331.3 bits (848), Expect = 2.9e-89
Identity = 234/593 (39.46%), Postives = 312/593 (52.61%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MDS +AT  + ++I++L+P+ A KI+G LL+ D G+++++ LA G ES+L S I K +  
Sbjct: 1   MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSSSRLGI-----NLPPSLTIPSPSSS 120
           LG+ S NSP           P      P    R SS   G      N P           
Sbjct: 61  LGIFSNNSPSSTPTSPSPLNPI---CRPPLNGRGSSHSNGFMDFRRNSPXXXXXXXXXXX 120

Query: 121 SSASW---------APGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQD 180
                         +P      + F  H  +  +     S   AGG   AD++D+ QL D
Sbjct: 121 XXXXXXXXXXXPHISPKHTPISKPFSSHQSNGLSATHSGSADAAGG---ADLLDDQQLND 180

Query: 181 QLSFLNDGSPTIGVKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAG 240
            LSFL+D       K  DL  P   L  S  G G  +            HRRS+S  DA 
Sbjct: 181 CLSFLDDSCS----KTEDLVDPSIPLDYSVDGDGETH-----------LHRRSFSC-DAS 240

Query: 241 LGTEDLNCGLGWKPCLYYARGFCKNGTSCRFLHGGLGDS-DG-GAAVGSPSKIEMMEQCH 300
             + D   G G KPC+Y++RG CKNG SC+F+HGG  D+ DG G    SP K+E   + H
Sbjct: 241 FVSGDDGFGGGCKPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENFVRQH 300

Query: 301 ELLRSKSSAQQRLAAASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMGEDLHK 360
           E +     A Q+   ASQ++  A   PY  K ++FL                  G++   
Sbjct: 301 EEMMRLKLAYQQQRLASQILGRAPQLPYE-KRMDFL-----LQQHAQRDGGLPFGDERFW 360

Query: 361 FGRSSRLEQNEFSLNGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPY 420
                RLE+ E +++ G    N ASRQIYLTFPADSTFK+EDV+ YFS++G VQDVRIPY
Sbjct: 361 SSSPGRLERMELAMHLG-DQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPY 420

Query: 421 QQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLC 480
           QQKRMFGFV+F +PETVK++LA+GNPHF+CD+RVLVKPYKEKGKV DK +  L       
Sbjct: 421 QQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLL------ 480

Query: 481 FALFCLLEFVCDTLDWCGCSNRKQQQIDR-DYSPCGTPTGLDSRELYDHLQLGSRMFYNS 540
                                  QQQI+R +YSPC +P+G+D RE  D   LGS+M Y  
Sbjct: 481 -----------------------QQQIERGNYSPCSSPSGIDPREQSD-FHLGSKMLYER 530

Query: 541 HQDLLWRRKLEEQQAD-LQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSP 576
            +  + RRK+E  QAD L+ ++L+ RR +NLQL + K S   +HHR+ S GSP
Sbjct: 541 RE--MMRRKIE--QADLLRAIELERRRFINLQLPEFKNSVTLNHHRSFSVGSP 530

[Close]

BLAST of Carg02060 vs. TrEMBL
Match: tr|A0A0A0KPZ6|A0A0A0KPZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175810 PE=4 SV=1)

HSP 1 Score: 1063.9 bits (2750), Expect = 1.7e-307
Identity = 612/782 (78.26%), Postives = 639/782 (81.71%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MDSYEA+R VFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFG E+LLHSVILKA+KD
Sbjct: 1   MDSYEASRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALLHSVILKAKKD 60

Query: 61  LGLPSVNSP--XXXXXXXXXXXPFSLSTNPIAISRQSSSRLGINLPPSLTIPSPSSSSSA 120
           L LP+VNSP  XXXXXXXXXXX                                      
Sbjct: 61  LSLPAVNSPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 SWAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTI 180
            WA GF+S LQ+ DDHLISPGNLPLGSSCF AGG PA+DMIDEFQLQDQLSFLNDGSPTI
Sbjct: 121 XWAAGFSSDLQTSDDHLISPGNLPLGSSCFAAGGAPASDMIDEFQLQDQLSFLNDGSPTI 180

Query: 181 GVKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGW 240
           GVKN+DLFFPPADLSSSPTGGGFG+YGGDA+W GGP HRRS SVNDA LGTEDLNCGLGW
Sbjct: 181 GVKNADLFFPPADLSSSPTGGGFGSYGGDATWGGGPVHRRSCSVNDACLGTEDLNCGLGW 240

Query: 241 KPCLYYARGFCKNGTSCRFLHGGLGDSD-GGAAVGSPSKIEMMEQCHELLRSKSSAQQRL 300
           KPCLY+ARGFCKNGTSCRFLHGGLGDSD   AAVGSPSKI++MEQCHELLRSKSSAQQRL
Sbjct: 241 KPCLYFARGFCKNGTSCRFLHGGLGDSDVSAAAVGSPSKIDVMEQCHELLRSKSSAQQRL 300

Query: 301 AAASQLMASANSFPYSPKSINFL------XXXXXXXXXXXXXXXXXMGEDLHKFGRSSRL 360
           AAASQLMASANSFPYSPKSINFL      XXXXXXXXXXXXXXXXX GEDLHKF RSSRL
Sbjct: 301 AAASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXXXXXXXXGEDLHKFSRSSRL 360

Query: 361 EQNEFSLNGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFG 420
           E+NEFSLNG AGI+NPASRQIYLTFPADSTFKEEDVSNYFS+YGPVQDVRIPYQQKRMFG
Sbjct: 361 ERNEFSLNGSAGIINPASRQIYLTFPADSTFKEEDVSNYFSMYGPVQDVRIPYQQKRMFG 420

Query: 421 FVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLL 480
           FVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKY                  
Sbjct: 421 FVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKY------------------ 480

Query: 481 EFVCDTLDWCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRR 540
                         RKQQQIDRD+SPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRR
Sbjct: 481 --------------RKQQQIDRDFSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRR 540

Query: 541 KLEEQQADLQTLDLQSRRLLNLQLLDVKKSQLP-HHHRALSTGSPIPSPTHSPNP-FAQN 600
           KLEEQQADLQTLDLQSRRLLNLQLLDVKK+QLP HHHRALSTGSPIPSPTHSPNP FAQN
Sbjct: 541 KLEEQQADLQTLDLQSRRLLNLQLLDVKKNQLPHHHHRALSTGSPIPSPTHSPNPLFAQN 600

Query: 601 HIFPTIRSSSGSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTM-SSTDMPRQPSPVD 660
            IFP+IR SSGS+STSDILR          GAT  PVRTPPP+  M SSTDMPRQPSPVD
Sbjct: 601 LIFPSIR-SSGSNSTSDILREN--------GAT--PVRTPPPVSVMASSTDMPRQPSPVD 660

Query: 661 NGTSTNKFPSNGQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFS---- 720
           NG S     + G   +DKERSQI+DSDLLECFEHNLPDSPFASPAKA  DY   FS    
Sbjct: 661 NGASA----TIGLNGNDKERSQIDDSDLLECFEHNLPDSPFASPAKATGDYTTNFSDIAA 720

Query: 721 IEEAANDSDDASSSSILTPTPSREVATASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPV 767
           + EAA DSDDA SSSILT T S EVAT SFKSFNCQ+PRFP+GHS IGMYAGTGGPTCPV
Sbjct: 721 VGEAATDSDDA-SSSILTSTSSLEVAT-SFKSFNCQIPRFPSGHSPIGMYAGTGGPTCPV 733

[Close]

BLAST of Carg02060 vs. TrEMBL
Match: tr|A0A1S4DWA4|A0A1S4DWA4_CUCME (zinc finger CCCH domain-containing protein 53 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488758 PE=4 SV=1)

HSP 1 Score: 1059.7 bits (2739), Expect = 3.2e-306
Identity = 609/780 (78.08%), Postives = 637/780 (81.67%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MDSYEA+R VFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFG E+LLHSVILKARKD
Sbjct: 1   MDSYEASRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALLHSVILKARKD 60

Query: 61  LGLPSVNSP--XXXXXXXXXXXPFSLSTNPIAISRQSSSRLGINLPPSLTIPSPSSSSSA 120
           L LP+VNSP   XXXXXXXXXX                                      
Sbjct: 61  LNLPAVNSPSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 120

Query: 121 SWAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTI 180
           SWA GF+S LQ+ DDHLISPGNLPLGSSCF AGG PA+DMIDEFQLQDQLSFLNDGSPTI
Sbjct: 121 SWAAGFSSDLQNSDDHLISPGNLPLGSSCFAAGGAPASDMIDEFQLQDQLSFLNDGSPTI 180

Query: 181 GVKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGW 240
           GVKNSDLFFPPADLSSSPTGGGFG+YGGDA+W GGP HRRS SVNDA LGTEDLNCGLGW
Sbjct: 181 GVKNSDLFFPPADLSSSPTGGGFGSYGGDATWGGGPVHRRSCSVNDACLGTEDLNCGLGW 240

Query: 241 KPCLYYARGFCKNGTSCRFLHGGLGDSD-GGAAVGSPSKIEMMEQCHELLRSKSSAQQRL 300
           KPCLYYARGFCKNGTSCRFLHGGLGDSD   AAVGSPSK++MMEQCHELLRSKSSAQQRL
Sbjct: 241 KPCLYYARGFCKNGTSCRFLHGGLGDSDASAAAVGSPSKMDMMEQCHELLRSKSSAQQRL 300

Query: 301 AAASQLMASANSFPYSPKSINFL---XXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQN 360
           AAASQLMASANSFPYSPKSINFL   XXXXXXXXXXXXXXXXX GEDLHKF RSSRLE+N
Sbjct: 301 AAASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXXXXXGEDLHKFSRSSRLERN 360

Query: 361 EFSLNGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVT 420
           EFS+NG AGI+NPASRQIYLTFPADSTFKEEDVSNYFS+YGPVQDVRIPYQQKRMFGFVT
Sbjct: 361 EFSMNGSAGIINPASRQIYLTFPADSTFKEEDVSNYFSMYGPVQDVRIPYQQKRMFGFVT 420

Query: 421 FVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFV 480
           FVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKY                     
Sbjct: 421 FVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKY--------------------- 480

Query: 481 CDTLDWCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLE 540
                      RKQQQIDRD+SPCGTPTGLDSRELYDHLQLGSRMFYN+HQDLLWRRKLE
Sbjct: 481 -----------RKQQQIDRDFSPCGTPTGLDSRELYDHLQLGSRMFYNTHQDLLWRRKLE 540

Query: 541 EQQADLQTLDLQSRRLLNLQLLDVKKSQLPH--HHRALSTGSPIPSPTHSPNP-FAQNHI 600
           EQQADLQTLDLQSRRLLNLQLLDVKK+QLPH     ALSTGSPIPSPTHSPNP FAQN I
Sbjct: 541 EQQADLQTLDLQSRRLLNLQLLDVKKNQLPHXXXXXALSTGSPIPSPTHSPNPLFAQNLI 600

Query: 601 FPTIRSSSGSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTM-SSTDMPRQPSPVDNG 660
           FP IR SSGSSSTSDILR    N ++       PVRTPPP+  M +STDMPRQ SPVDNG
Sbjct: 601 FPGIR-SSGSSSTSDILR---ENGVA-------PVRTPPPVSVMATSTDMPRQASPVDNG 660

Query: 661 TSTNKFPSNGQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFS----IE 720
                  + GQG +DKERSQI+DSDLLECFEHNLPDSPFASPAKA  DYA  FS    + 
Sbjct: 661 A----LATIGQGGNDKERSQIDDSDLLECFEHNLPDSPFASPAKATGDYATNFSDIAAVG 720

Query: 721 EAANDSDDASSSSILTPTPSREVATASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 767
           EAANDSDDA SSSILT T S EVAT SFKS+NCQ+PRFP+GHS IGMYAGTGGPTCPVGI
Sbjct: 721 EAANDSDDA-SSSILTSTSSLEVAT-SFKSYNCQIPRFPSGHSPIGMYAGTGGPTCPVGI 731

[Close]

BLAST of Carg02060 vs. TrEMBL
Match: tr|A0A1S3BDP8|A0A1S3BDP8_CUCME (zinc finger CCCH domain-containing protein 53 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488758 PE=4 SV=1)

HSP 1 Score: 1054.3 bits (2725), Expect = 1.3e-304
Identity = 607/780 (77.82%), Postives = 635/780 (81.41%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MDSYEA+R VFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFG E+LLHSVILKARKD
Sbjct: 1   MDSYEASRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALLHSVILKARKD 60

Query: 61  LGLPSVNSP--XXXXXXXXXXXPFSLSTNPIAISRQSSSRLGINLPPSLTIPSPSSSSSA 120
           L LP+VNSP   XXXXXXXXXX                                      
Sbjct: 61  LNLPAVNSPSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 120

Query: 121 SWAPGFNSKLQSFDDHLISPGNLPLGSSCFGAGGTPAADMIDEFQLQDQLSFLNDGSPTI 180
           SWA GF+S LQ+ DDHLISPGNLPLGSSCF AGG PA+DMIDEFQLQDQLSFLNDGSPTI
Sbjct: 121 SWAAGFSSDLQNSDDHLISPGNLPLGSSCFAAGGAPASDMIDEFQLQDQLSFLNDGSPTI 180

Query: 181 GVKNSDLFFPPADLSSSPTGGGFGNYGGDASWDGGPFHRRSYSVNDAGLGTEDLNCGLGW 240
           GVKNSDLFFPPADLSSSPTGGGFG+YGGDA+W GGP HRRS SVNDA LGTEDLNCGLGW
Sbjct: 181 GVKNSDLFFPPADLSSSPTGGGFGSYGGDATWGGGPVHRRSCSVNDACLGTEDLNCGLGW 240

Query: 241 KPCLYYARGFCKNGTSCRFLHGGLGDSD-GGAAVGSPSKIEMMEQCHELLRSKSSAQQRL 300
           KPCLYYARGFCKNGTSCRFLHGGLGDSD   AAVGSPSK++MMEQCHELLRSKSSAQQRL
Sbjct: 241 KPCLYYARGFCKNGTSCRFLHGGLGDSDASAAAVGSPSKMDMMEQCHELLRSKSSAQQRL 300

Query: 301 AAASQLMASANSFPYSPKSINFL---XXXXXXXXXXXXXXXXXMGEDLHKFGRSSRLEQN 360
           AAASQLMASANSFPYSPKSINFL   XXXXXXXXXXXXXXXXX GEDLHKF RSSRLE+N
Sbjct: 301 AAASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXXXXXGEDLHKFSRSSRLERN 360

Query: 361 EFSLNGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQDVRIPYQQKRMFGFVT 420
           EFS+NG AGI+NPASRQIYLTFPADSTFKEEDVSNYFS+YGPVQDVRIPYQQKRMFGFVT
Sbjct: 361 EFSMNGSAGIINPASRQIYLTFPADSTFKEEDVSNYFSMYGPVQDVRIPYQQKRMFGFVT 420

Query: 421 FVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFHSVLLCFALFCLLEFV 480
           FVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDK                      
Sbjct: 421 FVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDK---------------------- 480

Query: 481 CDTLDWCGCSNRKQQQIDRDYSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLE 540
                       KQQQIDRD+SPCGTPTGLDSRELYDHLQLGSRMFYN+HQDLLWRRKLE
Sbjct: 481 ------------KQQQIDRDFSPCGTPTGLDSRELYDHLQLGSRMFYNTHQDLLWRRKLE 540

Query: 541 EQQADLQTLDLQSRRLLNLQLLDVKKSQLPH--HHRALSTGSPIPSPTHSPNP-FAQNHI 600
           EQQADLQTLDLQSRRLLNLQLLDVKK+QLPH     ALSTGSPIPSPTHSPNP FAQN I
Sbjct: 541 EQQADLQTLDLQSRRLLNLQLLDVKKNQLPHXXXXXALSTGSPIPSPTHSPNPLFAQNLI 600

Query: 601 FPTIRSSSGSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTM-SSTDMPRQPSPVDNG 660
           FP IR SSGSSSTSDILR    N ++       PVRTPPP+  M +STDMPRQ SPVDNG
Sbjct: 601 FPGIR-SSGSSSTSDILR---ENGVA-------PVRTPPPVSVMATSTDMPRQASPVDNG 660

Query: 661 TSTNKFPSNGQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTDYAATFS----IE 720
                  + GQG +DKERSQI+DSDLLECFEHNLPDSPFASPAKA  DYA  FS    + 
Sbjct: 661 A----LATIGQGGNDKERSQIDDSDLLECFEHNLPDSPFASPAKATGDYATNFSDIAAVG 720

Query: 721 EAANDSDDASSSSILTPTPSREVATASFKSFNCQMPRFPTGHSTIGMYAGTGGPTCPVGI 767
           EAANDSDDA SSSILT T S EVAT SFKS+NCQ+PRFP+GHS IGMYAGTGGPTCPVGI
Sbjct: 721 EAANDSDDA-SSSILTSTSSLEVAT-SFKSYNCQIPRFPSGHSPIGMYAGTGGPTCPVGI 729

[Close]

BLAST of Carg02060 vs. TrEMBL
Match: tr|A0A2P4HFM2|A0A2P4HFM2_QUESU (Zinc finger ccch domain-containing protein 53 OS=Quercus suber OX=58331 GN=CFP56_26639 PE=4 SV=1)

HSP 1 Score: 804.3 bits (2076), Expect = 2.4e-229
Identity = 489/787 (62.13%), Postives = 565/787 (71.79%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MD YEATR VFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFG E+L+HSVILKARKD
Sbjct: 1   MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPETLVHSVILKARKD 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSS--SRL-GINLPPSLTIPSPSSSSS 120
           LGL S NSP XXXXXXXXXXPF LS+N +++SRQ+S  SRL GIN+PPSLTIP+PSS+SS
Sbjct: 61  LGLTS-NSP-XXXXXXXXXXPF-LSSNTLSMSRQNSTASRLGGINIPPSLTIPNPSSASS 120

Query: 121 ASWAPGFNSKLQSFDDHLISPGNLPLGSSC------------FGAGGTPAADMIDEFQLQ 180
           ASWA    S+LQS +D LISP NL +GSS             +G+G T   D++D+FQLQ
Sbjct: 121 ASWAA--LSELQSPED-LISPNNLAVGSSXXTTMNSSSSLPFYGSGTT---DVMDDFQLQ 180

Query: 181 DQLSFLNDGSPTIGVKNSDLFFPPADLSSSPTGGG-----FGNYGGDASWDGGPFHRRSY 240
           DQLSFLNDGSPT+G KN D ++P +DLSSSPTG G     F +YG   SW GG  HRRS 
Sbjct: 181 DQLSFLNDGSPTLGPKNPDFYYPQSDLSSSPTGAGADPMLFPSYG---SW-GGSLHRRSC 240

Query: 241 SVNDAGLGTEDLNCGLGWKPCLYYARGFCKNGTSCRFLHGGLGDS-DGGAAVGSPSKIEM 300
           SV+D  LG+ED N G GWKPCLY+ARG+CKNGTSCRFLHGGLG++ DG A VGSPSKI+M
Sbjct: 241 SVSDVCLGSEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGLGETVDGTAMVGSPSKIDM 300

Query: 301 MEQCHELLRSKSSAQQRLAAASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMG 360
           M+QCHE+LRSKS+ QQRLAAASQLMASA SFPYSPK +N L                 MG
Sbjct: 301 MDQCHEILRSKSAQQQRLAAASQLMASA-SFPYSPKCMNILLQHQQQNDTQRAAAALMMG 360

Query: 361 EDLHKFGRSSRLEQNEFSLNGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQD 420
           ED+HKFGR SRLE+NEFS+NGGAG+VNPASRQIYLTFPADSTF+EEDVSNYFSIYGPVQD
Sbjct: 361 EDMHKFGR-SRLERNEFSMNGGAGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD 420

Query: 421 VRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFH 480
           VRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYR     
Sbjct: 421 VRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYR----- 480

Query: 481 SVLLCFALFCLLEFVCDTLDWCGCSNRKQQQIDR-DYSPCGTPTGLDSRELYDHLQLGSR 540
                                     ++QQQ++R +YSPCGTPTG+D+R+ +D LQLGSR
Sbjct: 481 -------------------------KQQQQQVERGEYSPCGTPTGVDARDPFD-LQLGSR 540

Query: 541 MFYNSHQDLLWRRKLEEQQADLQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPS 600
           MFYN+ QD+L RRKLEE QADLQ L+LQSRRL+ LQLLD+KK    HHHRALSTGSPIPS
Sbjct: 541 MFYNA-QDMLLRRKLEE-QADLQALELQSRRLMGLQLLDIKKQ---HHHRALSTGSPIPS 600

Query: 601 PTHSPNPFAQNHIFPTIRSSSGSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSST 660
           PT SPNPF QN + P+ +  +G     D                          +T++  
Sbjct: 601 PTQSPNPFNQNIVLPSFQ--NGPEVPEDXXXXXXXXXXXXXXXXXXXXXLQQTAITVAGK 660

Query: 661 DMPRQPSPVDNGTSTNKFPSNGQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTD 720
           ++       +NG + N    NG G   K+    E+SDL EC EHNLPDSPFASP KA  D
Sbjct: 661 EL------TENGENAN---GNGIG---KQSPSHEESDLQECLEHNLPDSPFASPTKAAAD 720

Query: 721 YAATFSIEEAANDSDDAS------SSSILTPTPSREVATASFKSFNCQMPRFPTGHSTIG 760
           + +  + E   +D   +S      +S+IL  T + E+  ASFKSFNCQMPRF +GH  IG
Sbjct: 721 FFSNGTSETNVSDGSASSTNNKLATSTILPATSTLEM--ASFKSFNCQMPRFSSGHGAIG 720

[Close]

BLAST of Carg02060 vs. TrEMBL
Match: tr|A0A2P4HFM8|A0A2P4HFM8_QUESU (Zinc finger ccch domain-containing protein 22 OS=Quercus suber OX=58331 GN=CFP56_26639 PE=4 SV=1)

HSP 1 Score: 798.9 bits (2062), Expect = 1.0e-227
Identity = 487/787 (61.88%), Postives = 563/787 (71.54%), Query Frame = 0


Query: 1   MDSYEATRTVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGSESLLHSVILKARKD 60
           MD YEATR VFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFG E+L+HSVILKARKD
Sbjct: 1   MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPETLVHSVILKARKD 60

Query: 61  LGLPSVNSPXXXXXXXXXXXPFSLSTNPIAISRQSS--SRL-GINLPPSLTIPSPSSSSS 120
           LGL S NSP XXXXXXXXXXPF LS+N +++SRQ+S  SRL GIN+PPSLTIP+PSS+SS
Sbjct: 61  LGLTS-NSP-XXXXXXXXXXPF-LSSNTLSMSRQNSTASRLGGINIPPSLTIPNPSSASS 120

Query: 121 ASWAPGFNSKLQSFDDHLISPGNLPLGSSC------------FGAGGTPAADMIDEFQLQ 180
           ASWA    S+LQS +D LISP NL +GSS             +G+G T   D++D+FQLQ
Sbjct: 121 ASWAA--LSELQSPED-LISPNNLAVGSSXXTTMNSSSSLPFYGSGTT---DVMDDFQLQ 180

Query: 181 DQLSFLNDGSPTIGVKNSDLFFPPADLSSSPTGGG-----FGNYGGDASWDGGPFHRRSY 240
           DQLSFLNDGSPT+G KN D ++P +DLSSSPTG G     F +YG   SW GG  HRRS 
Sbjct: 181 DQLSFLNDGSPTLGPKNPDFYYPQSDLSSSPTGAGADPMLFPSYG---SW-GGSLHRRSC 240

Query: 241 SVNDAGLGTEDLNCGLGWKPCLYYARGFCKNGTSCRFLHGGLGDS-DGGAAVGSPSKIEM 300
           SV+D  LG+ED N G GWKPCLY+ARG+CKNGTSCRFLHGGLG++ DG A VGSPSKI+M
Sbjct: 241 SVSDVCLGSEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGLGETVDGTAMVGSPSKIDM 300

Query: 301 MEQCHELLRSKSSAQQRLAAASQLMASANSFPYSPKSINFLXXXXXXXXXXXXXXXXXMG 360
           M+QCHE+LRSKS+ QQRLAAASQLMASA SFPYSPK +N L                 MG
Sbjct: 301 MDQCHEILRSKSAQQQRLAAASQLMASA-SFPYSPKCMNILLQHQQQNDTQRAAAALMMG 360

Query: 361 EDLHKFGRSSRLEQNEFSLNGGAGIVNPASRQIYLTFPADSTFKEEDVSNYFSIYGPVQD 420
           ED+HKFGR SRLE+NEFS+NGGAG+VNPASRQIYLTFPADSTF+EEDVSNYFSIYGPVQD
Sbjct: 361 EDMHKFGR-SRLERNEFSMNGGAGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD 420

Query: 421 VRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRHTLFH 480
           VRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDK       
Sbjct: 421 VRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDK------- 480

Query: 481 SVLLCFALFCLLEFVCDTLDWCGCSNRKQQQIDR-DYSPCGTPTGLDSRELYDHLQLGSR 540
                                     ++QQQ++R +YSPCGTPTG+D+R+ +D LQLGSR
Sbjct: 481 -------------------------KQQQQQVERGEYSPCGTPTGVDARDPFD-LQLGSR 540

Query: 541 MFYNSHQDLLWRRKLEEQQADLQTLDLQSRRLLNLQLLDVKKSQLPHHHRALSTGSPIPS 600
           MFYN+ QD+L RRKLEE QADLQ L+LQSRRL+ LQLLD+KK    HHHRALSTGSPIPS
Sbjct: 541 MFYNA-QDMLLRRKLEE-QADLQALELQSRRLMGLQLLDIKKQ---HHHRALSTGSPIPS 600

Query: 601 PTHSPNPFAQNHIFPTIRSSSGSSSTSDILRGEVHNPISACGATPVPVRTPPPIVTMSST 660
           PT SPNPF QN + P+ +  +G     D                          +T++  
Sbjct: 601 PTQSPNPFNQNIVLPSFQ--NGPEVPEDXXXXXXXXXXXXXXXXXXXXXLQQTAITVAGK 660

Query: 661 DMPRQPSPVDNGTSTNKFPSNGQGEHDKERSQIEDSDLLECFEHNLPDSPFASPAKAPTD 720
           ++       +NG + N    NG G   K+    E+SDL EC EHNLPDSPFASP KA  D
Sbjct: 661 EL------TENGENAN---GNGIG---KQSPSHEESDLQECLEHNLPDSPFASPTKAAAD 718

Query: 721 YAATFSIEEAANDSDDAS------SSSILTPTPSREVATASFKSFNCQMPRFPTGHSTIG 760
           + +  + E   +D   +S      +S+IL  T + E+  ASFKSFNCQMPRF +GH  IG
Sbjct: 721 FFSNGTSETNVSDGSASSTNNKLATSTILPATSTLEM--ASFKSFNCQMPRFSSGHGAIG 718

The following BLAST results are available for this feature:

BLAST of Carg02060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956378.1	0.0e+00	94.39	zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita moschat...	[more]
XP_022956383.1	0.0e+00	94.13	zinc finger CCCH domain-containing protein 53-like isoform X2 [Cucurbita moschat...	[more]
XP_022999006.1	0.0e+00	92.31	zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita maxima]...	[more]
XP_022999022.1	0.0e+00	92.05	zinc finger CCCH domain-containing protein 53-like isoform X2 [Cucurbita maxima]	[more]
XP_023552014.1	0.0e+00	94.01	zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita pepo su...	[more]

BLAST of Carg02060 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51950.1	9.8e-104	40.05	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ...	[more]
AT5G12440.1	1.6e-90	39.46	CCCH-type zinc fingerfamily protein with RNA-binding domain	[more]
AT3G21100.2	1.4e-81	37.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G63450.3	2.5e-59	33.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G51520.2	1.1e-49	31.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg02060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0D3J9\|C3H53_ORYSJ	1.3e-126	45.02	Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q10LZ9\|C3H23_ORYSJ	3.8e-121	44.50	Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q10M00\|C3H22_ORYSJ	7.9e-111	44.55	Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q9SV09\|C3H46_ARATH	1.8e-102	40.05	Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q94CJ8\|C3H55_ARATH	2.9e-89	39.46	Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Carg02060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPZ6\|A0A0A0KPZ6_CUCSA	1.7e-307	78.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175810 PE=4 SV=1	[more]
tr\|A0A1S4DWA4\|A0A1S4DWA4_CUCME	3.2e-306	78.08	zinc finger CCCH domain-containing protein 53 isoform X1 OS=Cucumis melo OX=3656...	[more]
tr\|A0A1S3BDP8\|A0A1S3BDP8_CUCME	1.3e-304	77.82	zinc finger CCCH domain-containing protein 53 isoform X2 OS=Cucumis melo OX=3656...	[more]
tr\|A0A2P4HFM2\|A0A2P4HFM2_QUESU	2.4e-229	62.13	Zinc finger ccch domain-containing protein 53 OS=Quercus suber OX=58331 GN=CFP56...	[more]
tr\|A0A2P4HFM8\|A0A2P4HFM8_QUESU	1.0e-227	61.88	Zinc finger ccch domain-containing protein 22 OS=Quercus suber OX=58331 GN=CFP56...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034365	AtC3H46-like_RRM
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000571	Znf_CCCH
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02060-RA	Carg02060-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 533..553
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 238..297 e-value: 2.0E-5 score: 26.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 564..670
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 631..659
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 573..610
None	No IPR available	PANTHER	PTHR24009:SF3	RNA-BINDING RRM/RBD/RNP MOTIFS FAMILY PROTEIN-RELATED	coord: 486..750
None	No IPR available	PANTHER	PTHR24009	FAMILY NOT NAMED	coord: 486..750
None	No IPR available	PANTHER	PTHR24009	FAMILY NOT NAMED	coord: 1..455
None	No IPR available	PANTHER	PTHR24009:SF3	RNA-BINDING RRM/RBD/RNP MOTIFS FAMILY PROTEIN-RELATED	coord: 1..455
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 371..441 e-value: 4.0E-8 score: 43.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 382..426 e-value: 1.4E-5 score: 24.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 370..446 score: 9.473
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 237..261 e-value: 0.0019 score: 27.5
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 240..260 e-value: 2.1E-4 score: 21.0
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 235..262 score: 13.056
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 318..455 e-value: 7.7E-10 score: 40.8
IPR034365	AtC3H46-like, RNA recognition motif	CDD	cd12458	RRM_AtC3H46_like	coord: 372..441 e-value: 1.75485E-38 score: 136.813
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 381..452

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02060	Cla020066	Watermelon (97103) v1	carwmB0844
Carg02060	Csa5G175810	Cucumber (Chinese Long) v2	carcuB0858
Carg02060	MELO3C011738	Melon (DHL92) v3.5.1	carmeB0832
Carg02060	ClCG02G013970	Watermelon (Charleston Gray)	carwcgB0812
Carg02060	CSPI05G08730	Wild cucumber (PI 183967)	carcpiB0878
Carg02060	Cucsa.166080	Cucumber (Gy14) v1	carcgyB0963
Carg02060	CmaCh04G002760	Cucurbita maxima (Rimu)	carcmaB1171
Carg02060	CmaCh04G012480	Cucurbita maxima (Rimu)	carcmaB1170
Carg02060	CmoCh04G002830	Cucurbita moschata (Rifu)	carcmoB1139
Carg02060	CmoCh04G013230	Cucurbita moschata (Rifu)	carcmoB1138
Carg02060	Lsi04G008040	Bottle gourd (USVL1VR-Ls)	carlsiB765
Carg02060	Cp4.1LG01g10100	Cucurbita pepo (Zucchini)	carcpeB1177
Carg02060	Cp4.1LG01g04200	Cucurbita pepo (Zucchini)	carcpeB1179
Carg02060	CsGy5G006110	Cucumber (Gy14) v2	carcgybB0832
Carg02060	MELO3C011738.2	Melon (DHL92) v3.6.1	carmedB0844
Carg02060	CsaV3_5G006190	Cucumber (Chinese Long) v3	carcucB0882
Carg02060	Cla97C02G039660	Watermelon (97103) v2	carwmbB0874
Carg02060	Bhi07G000892	Wax gourd	carwgoB0984

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02060	Carg25677	Silver-seed gourd	carcarB625

The following block(s) are covering this gene:

None